BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.1
(1197 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN129330.1|CN129330 RHOH1_34_G08.g1_A002 Acid- and alkal... 1055 0.0
gb|CW220802.1|CW220802 104_655_11197555_148_37154_070 Sorgh... 1033 0.0
gb|CW220801.1|CW220801 104_655_11197555_116_37153_070 Sorgh... 952 0.0
gb|CW322470.1|CW322470 104_816_11476115_116_35953_044 Sorgh... 920 0.0
gb|CW388607.1|CW388607 fsbb001f073h01k0 Sorghum methylation... 827 0.0
gb|BE360375.1|BE360375 DG1_63_E06.b1_A002 Dark Grown 1 (DG1... 747 0.0
gb|BE360089.1|BE360089 DG1_61_D02.b1_A002 Dark Grown 1 (DG1... 737 0.0
gb|CN126243.1|CN126243 RHOH1_16_B03.b1_A002 Acid- and alkal... 724 0.0
gb|CN138952.1|CN138952 OX1_15_D09.b1_A002 Oxidatively-stres... 718 0.0
gb|BE358732.1|BE358732 DG1_31_D02.g1_A002 Dark Grown 1 (DG1... 688 0.0
gb|BE355038.1|BE355038 DG1_10_B12.g1_A002 Dark Grown 1 (DG1... 682 0.0
gb|CN129246.1|CN129246 RHOH1_34_G08.b3_A002 Acid- and alkal... 680 0.0
gb|BG932930.1|BG932930 DG1_69_B03.g1_A002 Dark Grown 1 (DG1... 668 0.0
gb|BE355461.1|BE355461 DG1_114_C11.g1_A002 Dark Grown 1 (DG... 660 0.0
gb|CN125016.1|CN125016 RHOH1_8_H01.b1_A002 Acid- and alkali... 638 0.0
gb|CF072290.1|CF072290 FE1_7_F11.b1_A002 Iron-deficient see... 630 e-179
gb|CW436719.1|CW436719 fsbb001f153h11k0 Sorghum methylation... 628 e-178
gb|BI246012.1|BI246012 IP1_66_E07.b1_A002 Immature pannicle... 617 e-174
gb|BE361202.1|BE361202 DG1_70_F03.g1_A002 Dark Grown 1 (DG1... 615 e-174
gb|CN135116.1|CN135116 OX1_30_E02.g1_A002 Oxidatively-stres... 611 e-173
gb|BG239851.1|BG239851 OV1_29_G11.g1_A002 Ovary 1 (OV1) Sor... 601 e-170
gb|BE355327.1|BE355327 DG1_114_H09.b1_A002 Dark Grown 1 (DG... 597 e-169
gb|BE355405.1|BE355405 DG1_114_H09.b2_A002 Dark Grown 1 (DG... 597 e-169
gb|BG103102.1|BG103102 RHIZ2_18_B11.g1_A003 Rhizome2 (RHIZ2... 597 e-169
gb|CD221354.1|CD221354 CCC1_54_F07.b1_A007 Callus culture/c... 597 e-169
gb|BF585576.1|BF585576 FM1_23_B02.b1_A003 Floral-Induced Me... 595 e-168
gb|AW923013.1|AW923013 DG1_48_F12.b1_A002 Dark Grown 1 (DG1... 593 e-167
gb|BG412632.1|BG412632 OV2_36_H06.g1_A002 Ovary 2 (OV2) Sor... 589 e-166
gb|BE355472.1|BE355472 DG1_114_H09.g1_A002 Dark Grown 1 (DG... 583 e-164
gb|BG356951.1|BG356951 OV2_12_A10.g1_A002 Ovary 2 (OV2) Sor... 581 e-164
gb|BE592930.1|BE592930 WS1_92_B10.b1_A002 Water-stressed 1 ... 579 e-163
gb|CD224791.1|CD224791 CCC1_36_B03.b1_A007 Callus culture/c... 579 e-163
gb|CW297734.1|CW297734 104_780_11462198_148_35653_063 Sorgh... 573 e-161
gb|CD223110.1|CD223110 CCC1_26_F03.b1_A007 Callus culture/c... 561 e-158
gb|CD224320.1|CD224320 CCC1_33_H03.b1_A007 Callus culture/c... 555 e-156
gb|CX608397.1|CX608397 ANR1_38_H10.b1_A002 Anaerobic roots ... 535 e-150
gb|CX622505.1|CX622505 GABR1_64_H04.b2_A002 GA- or brassino... 531 e-149
gb|AW672134.1|AW672134 LG1_357_D06.b1_A002 Light Grown 1 (L... 523 e-146
gb|BE359598.1|BE359598 DG1_54_H12.g2_A002 Dark Grown 1 (DG1... 523 e-146
gb|BE367050.1|BE367050 PI1_42_D08.g2_A002 Pathogen induced ... 519 e-145
gb|CN131413.1|CN131413 RHOH1_48_A02.b1_A002 Acid- and alkal... 511 e-143
gb|BM318326.1|BM318326 PI1_77_C08.g9_A002 Pathogen induced ... 488 e-136
gb|AW745482.1|AW745482 WS1_35_G01.b1_A002 Water-stressed 1 ... 476 e-132
gb|BE360475.1|BE360475 DG1_63_E06.g1_A002 Dark Grown 1 (DG1... 476 e-132
gb|BG932961.1|BG932961 DG1_69_E04.g1_A002 Dark Grown 1 (DG1... 476 e-132
gb|BE356652.1|BE356652 DG1_126_A06.g1_A002 Dark Grown 1 (DG... 474 e-132
gb|CD431991.1|CD431991 ETH1_12_C08.b1_A002 Ethylene-treated... 474 e-132
gb|CF072697.1|CF072697 FE1_25_E09.b1_A002 Iron-deficient se... 456 e-126
gb|CD426231.1|CD426231 SA1_19_D09.b1_A002 Salicylic acid-tr... 450 e-124
gb|BI211453.1|BI211453 IP1_57_A06.g1_A002 Immature pannicle... 428 e-118
gb|BE360126.1|BE360126 DG1_61_D02.g1_A002 Dark Grown 1 (DG1... 426 e-117
gb|BE360152.1|BE360152 DG1_61_D02.g2_A002 Dark Grown 1 (DG1... 422 e-116
gb|AW677396.1|AW677396 DG1_6_C02.b1_A002 Dark Grown 1 (DG1)... 414 e-114
gb|BE358230.1|BE358230 DG1_26_E05.b2_A002 Dark Grown 1 (DG1... 414 e-114
gb|BG158592.1|BG158592 RHIZ2_42_E08.g1_A003 Rhizome2 (RHIZ2... 402 e-110
gb|BE354954.1|BE354954 DG1_10_B12.b1_A002 Dark Grown 1 (DG1... 396 e-108
gb|AW922837.1|AW922837 DG1_46_C11.g1_A002 Dark Grown 1 (DG1... 394 e-108
gb|CW322471.1|CW322471 104_816_11476115_148_35952_044 Sorgh... 383 e-104
gb|BE366988.1|BE366988 PI1_42_D08.g1_A002 Pathogen induced ... 383 e-104
gb|BF585486.1|BF585486 FM1_23_B02.g1_A003 Floral-Induced Me... 381 e-103
gb|BE355307.1|BE355307 DG1_114_C11.b1_A002 Dark Grown 1 (DG... 377 e-102
gb|AW565319.1|AW565319 LG1_342_A09.g1_A002 Light Grown 1 (L... 373 e-101
gb|AW923056.1|AW923056 DG1_48_F12.g1_A002 Dark Grown 1 (DG1... 373 e-101
gb|BE360990.1|BE360990 DG1_68_E08.g1_A002 Dark Grown 1 (DG1... 373 e-101
gb|CF427528.1|CF427528 PH1_16_G05.b1_A002 Phosphorous-defic... 371 e-100
gb|CW297733.1|CW297733 104_780_11462198_116_35649_063 Sorgh... 369 e-100
gb|BG158929.1|BG158929 RHIZ2_42_E08.b1_A003 Rhizome2 (RHIZ2... 369 e-100
gb|BE355393.1|BE355393 DG1_114_C11.b2_A002 Dark Grown 1 (DG... 365 6e-099
gb|BG947157.1|BG947157 IP1_3_C03.g1_A002 Immature pannicle ... 361 1e-097
gb|CF431298.1|CF431298 NIT1_5_B12.b1_A002 Nitrogen-deficien... 359 4e-097
gb|BI245526.1|BI245526 IP1_66_E07.g1_A002 Immature pannicle... 357 2e-096
gb|CD426221.1|CD426221 SA1_19_A02.b1_A002 Salicylic acid-tr... 357 2e-096
gb|AW677269.1|AW677269 DG1_6_C02.g1_A002 Dark Grown 1 (DG1)... 353 2e-095
gb|CD220727.1|CD220727 CCC1_69_D11.b1_A007 Callus culture/c... 353 2e-095
gb|BG054269.1|BG054269 OV2_4_D10.g1_A002 Ovary 2 (OV2) Sorg... 349 4e-094
gb|AW677573.1|AW677573 DG1_8_H07.g1_A002 Dark Grown 1 (DG1)... 345 6e-093
gb|BE355572.1|BE355572 DG1_115_C11.b1_A002 Dark Grown 1 (DG... 341 9e-092
gb|BG049661.1|BG049661 EM1_7_D05.g1_A002 Embryo 1 (EM1) Sor... 333 2e-089
gb|BI099244.1|BI099244 IP1_40_D02.g1_A002 Immature pannicle... 331 9e-089
gb|CF074261.1|CF074261 FE1_23_H08.b1_A002 Iron-deficient se... 313 2e-083
gb|BG558757.1|BG558757 RHIZ2_56_B07.b1_A003 Rhizome2 (RHIZ2... 309 3e-082
gb|BE594353.1|BE594353 PI1_32_D08.b2_A002 Pathogen induced ... 303 2e-080
gb|BI075504.1|BI075504 IP1_21_D02.g1_A002 Immature pannicle... 289 3e-076
gb|CW314845.1|CW314845 104_805_11472043_148_35821_070 Sorgh... 287 1e-075
gb|CW300537.1|CW300537 104_784_11463715_116_36253_080 Sorgh... 283 2e-074
gb|BG102827.1|BG102827 RHIZ2_33_H09.b1_A003 Rhizome2 (RHIZ2... 274 2e-071
gb|AW677701.1|AW677701 WS1_10_H08.g1_A002 Water-stressed 1 ... 268 1e-069
gb|BG047581.1|BG047581 OV1_25_F09.b1_A002 Ovary 1 (OV1) Sor... 268 1e-069
gb|BG102506.1|BG102506 RHIZ2_33_H09.g1_A003 Rhizome2 (RHIZ2... 268 1e-069
gb|BG948544.1|BG948544 IP1_10_H11.b1_A002 Immature pannicle... 268 1e-069
gb|CW380094.1|CW380094 fsbb001f059l10f0 Sorghum methylation... 266 4e-069
gb|CW482624.1|CW482624 fsbb001f242n03f0 Sorghum methylation... 266 4e-069
gb|CD226116.1|CD226116 CCC1_43_C09.g1_A007 Callus culture/c... 266 4e-069
gb|CW463400.1|CW463400 fsbb001f211p20f0 Sorghum methylation... 264 2e-068
gb|CW300538.1|CW300538 104_784_11463715_148_36254_080 Sorgh... 260 3e-067
gb|BE359207.1|BE359207 DG1_39_C05.g1_A002 Dark Grown 1 (DG1... 258 1e-066
gb|BG047939.1|BG047939 OV1_25_F09.g1_A002 Ovary 1 (OV1) Sor... 258 1e-066
gb|BG932956.1|BG932956 DG1_69_D11.g1_A002 Dark Grown 1 (DG1... 258 1e-066
gb|BE366341.1|BE366341 PI1_32_D08.g1_A002 Pathogen induced ... 252 6e-065
gb|BF656584.1|BF656584 FM1_51_H09.g1_A003 Floral-Induced Me... 244 2e-062
gb|BG948233.1|BG948233 IP1_10_H11.g1_A002 Immature pannicle... 244 2e-062
gb|BE362573.1|BE362573 DG1_87_D07.g1_A002 Dark Grown 1 (DG1... 232 6e-059
gb|BE361256.1|BE361256 DG1_70_D10.g1_A002 Dark Grown 1 (DG1... 228 9e-058
gb|BI351177.1|BI351177 IP1_70_H04.g1_A002 Immature pannicle... 224 1e-056
gb|BE361172.1|BE361172 DG1_70_F03.b1_A002 Dark Grown 1 (DG1... 222 6e-056
gb|AW285466.2|AW285466 LG1_251_H09.g1_A002 Light Grown 1 (L... 220 2e-055
gb|BG273178.1|BG273178 OV2_27_G08.g1_A002 Ovary 2 (OV2) Sor... 216 4e-054
gb|BI075798.1|BI075798 IP1_21_D02.b1_A002 Immature pannicle... 216 4e-054
gb|CW234030.1|CW234030 104_687_11213762_148_37379_005 Sorgh... 214 1e-053
gb|CW315422.1|CW315422 104_806_11472351_116_35823_056 Sorgh... 210 2e-052
gb|CW435724.1|CW435724 fsbb001f152a06f0 Sorghum methylation... 208 9e-052
gb|BE366963.1|BE366963 PI1_42_D08.b1_A002 Pathogen induced ... 206 3e-051
gb|BI351078.1|BI351078 IP1_69_E08.g1_A002 Immature pannicle... 198 8e-049
gb|BZ336713.1|BZ336713 hz38f12.g1 WGS-SbicolorF (JM107 adap... 196 3e-048
gb|CW246220.1|CW246220 104_707_11221250_148_35087_013 Sorgh... 196 3e-048
gb|BM323365.1|BM323365 PIC1_18_D12.b1_A002 Pathogen-infecte... 196 3e-048
gb|BE359155.1|BE359155 DG1_39_C05.b1_A002 Dark Grown 1 (DG1... 192 5e-047
gb|BE595137.1|BE595137 PI1_46_C03.b1_A002 Pathogen induced ... 192 5e-047
gb|BE918238.1|BE918238 OV1_3_G09.b1_A002 Ovary 1 (OV1) Sorg... 188 8e-046
gb|BM318639.1|BM318639 PI1_15_H09.b9_A002 Pathogen induced ... 188 8e-046
gb|AW285870.1|AW285870 LG1_251_B10.b1_A002 Light Grown 1 (L... 184 1e-044
gb|DN551872.1|DN551872 pSPR-RT-MR-H1_G04_C276 pSPR Sorghum ... 180 2e-043
gb|BG159391.1|BG159391 OV2_7_C05.g1_A002 Ovary 2 (OV2) Sorg... 178 8e-043
gb|CX619982.1|CX619982 GABR1_49_D04.b1_A002 GA- or brassino... 170 2e-040
gb|CW020792.1|CW020792 104_109_10409170_114_30490 Sorghum m... 168 8e-040
gb|CL164481.1|CL164481 104_358_10807939_116_31815_307 Sorgh... 165 1e-038
gb|BG052269.1|BG052269 RHIZ2_12_D09.g1_A003 Rhizome2 (RHIZ2... 159 7e-037
gb|BF704912.1|BF704912 FM1_46_B04.g2_A003 Floral-Induced Me... 157 3e-036
gb|AW285917.2|AW285917 LG1_251_H09.b1_A002 Light Grown 1 (L... 151 2e-034
gb|BE358315.1|BE358315 DG1_29_B04.b1_A002 Dark Grown 1 (DG1... 151 2e-034
gb|CW150733.1|CW150733 104_551_11143570_116_36314_043 Sorgh... 145 1e-032
gb|CW460986.1|CW460986 fsbb001f208h04f0 Sorghum methylation... 141 2e-031
gb|CW176958.1|CW176958 104_590_11158763_116_36590_046 Sorgh... 139 7e-031
gb|BE594234.1|BE594234 WS1_103_H10.b1_A002 Water-stressed 1... 133 4e-029
gb|BG560052.1|BG560052 RHIZ2_68_G11.b1_A003 Rhizome2 (RHIZ2... 125 1e-026
gb|CW246218.1|CW246218 104_707_11221250_116_35083_013 Sorgh... 119 6e-025
gb|BF655599.1|BF655599 FM1_46_B04.b1_A003 Floral-Induced Me... 113 4e-023
gb|U51570.1|SBU51570 Sorghum bicolor phenylalanine amonia-l... 113 4e-023
gb|CL173774.1|CL173774 104_377_10891106_116_31793_242 Sorgh... 107 2e-021
gb|CL173775.1|CL173775 104_377_10891106_148_31792_242 Sorgh... 107 2e-021
gb|CW315423.1|CW315423 104_806_11472351_148_35827_056 Sorgh... 107 2e-021
gb|CW482625.1|CW482625 fsbb001f242n03k0 Sorghum methylation... 107 2e-021
gb|BE362449.1|BE362449 DG1_86_G01.g1_A002 Dark Grown 1 (DG1... 107 2e-021
gb|BG241551.1|BG241551 RHIZ2_17_A01.g1_A003 Rhizome2 (RHIZ2... 107 2e-021
gb|BG557612.1|BG557612 EM1_54_A03.g1_A002 Embryo 1 (EM1) So... 107 2e-021
gb|BG356009.2|BG356009 EM1_19_C06.g1_A002 Embryo 1 (EM1) So... 107 2e-021
gb|CD226034.1|CD226034 CCC1_43_C09.b1_A007 Callus culture/c... 107 2e-021
gb|CD463381.1|CD463381 ETH1_44_H01.b1_A002 Ethylene-treated... 107 2e-021
gb|CW398382.1|CW398382 fsbb001f087m15k0 Sorghum methylation... 105 9e-021
gb|BG355763.2|BG355763 EM1_19_C06.b1_A002 Embryo 1 (EM1) So... 103 4e-020
gb|CW180839.1|CW180839 104_595_11163170_148_36644_005 Sorgh... 101 1e-019
gb|CW442301.1|CW442301 fsbb001f161o10f0 Sorghum methylation... 100 6e-019
gb|BF587927.1|BF587927 FM1_34_F02.g1_A003 Floral-Induced Me... 100 6e-019
gb|BG101760.1|BG101760 RHIZ2_21_A04.g1_A003 Rhizome2 (RHIZ2... 100 6e-019
gb|CD204024.1|CD204024 HS1_3_A02.b1_A012 Heat-shocked seedl... 100 6e-019
gb|CW150734.1|CW150734 104_551_11143570_148_36313_043 Sorgh... 96 9e-018
gb|CW460987.1|CW460987 fsbb001f208h04k0 Sorghum methylation... 96 9e-018
gb|BF587289.1|BF587289 FM1_34_F02.b1_A003 Floral-Induced Me... 96 9e-018
gb|CL156453.1|CL156453 104_343_10782872_116_31476_200 Sorgh... 94 4e-017
gb|BE362992.2|BE362992 DG1_92_F01.g1_A002 Dark Grown 1 (DG1... 94 4e-017
gb|CD209387.1|CD209387 HS1_42_G07.b1_A012 Heat-shocked seed... 94 4e-017
gb|AW922566.1|AW922566 DG1_45_G07.g1_A002 Dark Grown 1 (DG1... 92 1e-016
gb|BG947536.1|BG947536 IP1_5_F11.g1_A002 Immature pannicle ... 84 3e-014
gb|CL164480.1|CL164480 104_358_10807939_114_31814_307 Sorgh... 82 1e-013
gb|CW091315.1|CW091315 104_453_10998477_114_33030_093 Sorgh... 82 1e-013
gb|CW176959.1|CW176959 104_590_11158763_148_36591_046 Sorgh... 82 1e-013
gb|BE358396.1|BE358396 DG1_29_B04.g1_A002 Dark Grown 1 (DG1... 82 1e-013
gb|BE358841.1|BE358841 DG1_32_D06.g1_A002 Dark Grown 1 (DG1... 82 1e-013
gb|BE360494.1|BE360494 DG1_63_B03.g1_A002 Dark Grown 1 (DG1... 82 1e-013
gb|BE918444.1|BE918444 OV1_3_G09.g1_A002 Ovary 1 (OV1) Sorg... 82 1e-013
gb|BE364574.2|BE364574 PI1_15_H09.g1_A002 Pathogen induced ... 82 1e-013
gb|CW234029.1|CW234029 104_687_11213762_116_37380_005 Sorgh... 80 5e-013
gb|CW380095.1|CW380095 fsbb001f059l10k0 Sorghum methylation... 78 2e-012
gb|BE125665.1|BE125665 DG1_54_H12.b1_A002 Dark Grown 1 (DG1... 78 2e-012
gb|CW398381.1|CW398381 fsbb001f087m15f0 Sorghum methylation... 76 8e-012
gb|CW410953.1|CW410953 fsbb001f105o16f0 Sorghum methylation... 74 3e-011
gb|BE367374.1|BE367374 PI1_4_E12.g1_A002 Pathogen induced 1... 74 3e-011
gb|BF481310.1|BF481310 FM1_18_D04.g1_A003 Floral-Induced Me... 74 3e-011
gb|BG487962.1|BG487962 RHIZ2_61_D12.g1_A003 Rhizome2 (RHIZ2... 74 3e-011
gb|BG558058.1|BG558058 RHIZ2_66_B02.g1_A003 Rhizome2 (RHIZ2... 74 3e-011
gb|CW437890.1|CW437890 fsbb001f155d19f0 Sorghum methylation... 70 5e-010
gb|CW221368.1|CW221368 104_656_11197867_148_37453_074 Sorgh... 68 2e-009
gb|CW221524.1|CW221524 104_656_11197953_148_37453_037 Sorgh... 68 2e-009
gb|BG412949.1|BG412949 OV2_36_H06.b1_A002 Ovary 2 (OV2) Sor... 68 2e-009
gb|BI099203.1|BI099203 IP1_39_D08.g1_A002 Immature pannicle... 68 2e-009
gb|BI141296.1|BI141296 IP1_53_H08.g1_A002 Immature pannicle... 68 2e-009
gb|BI141482.1|BI141482 IP1_56_F09.g1_A002 Immature pannicle... 68 2e-009
gb|CW221367.1|CW221367 104_656_11197867_116_37452_074 Sorgh... 66 8e-009
gb|AW563466.1|AW563466 LG1_228_A10.g1_A002 Light Grown 1 (L... 64 3e-008
gb|AW672574.1|AW672574 LG1_360_G08.g1_A002 Light Grown 1 (L... 64 3e-008
gb|BI075620.1|BI075620 IP1_23_A04.g1_A002 Immature pannicle... 64 3e-008
gb|AW672502.1|AW672502 LG1_360_G08.b1_A002 Light Grown 1 (L... 58 2e-006
gb|CN133790.1|CN133790 OX1_18_H01.b1_A002 Oxidatively-stres... 54 3e-005
gb|CW091307.1|CW091307 104_453_10998472_116_33035_062 Sorgh... 46 0.007
gb|CW389640.1|CW389640 fsbb001f074o21k0 Sorghum methylation... 46 0.007
gb|CW442302.1|CW442302 fsbb001f161o10k0 Sorghum methylation... 46 0.007
gb|CW457821.1|CW457821 fsbb001f203m21f0 Sorghum methylation... 46 0.007
gb|CW474770.1|CW474770 fsbb001f230n01k0 Sorghum methylation... 46 0.007
gb|BE361033.1|BE361033 DG1_69_B03.b1_A002 Dark Grown 1 (DG1... 44 0.030
gb|CL152784.1|CL152784 104_336_10780226_114_31365_242 Sorgh... 42 0.12
gb|CL166785.1|CL166785 104_363_10809615_114_31800_063 Sorgh... 42 0.12
gb|CL166786.1|CL166786 104_363_10809615_116_31801_063 Sorgh... 42 0.12
gb|CW038295.1|CW038295 104_270_10504843_115_30386 Sorghum m... 42 0.12
gb|CW155235.1|CW155235 104_557_11146029_116_36359_085 Sorgh... 42 0.12
gb|CW184060.1|CW184060 104_600_11164952_116_36684_028 Sorgh... 42 0.12
gb|CW388606.1|CW388606 fsbb001f073h01f0 Sorghum methylation... 42 0.12
gb|CW789152.1|CW789152 SP__Ba0054I21.f SP__Ba Sorghum propi... 42 0.12
gb|CW257415.1|CW257415 104_722_11227323_116_35152_002 Sorgh... 40 0.46
>gb|CN129330.1|CN129330 RHOH1_34_G08.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_34_G08_A002 5', mRNA sequence
Length = 772
Score = 1055 bits (532), Expect = 0.0
Identities = 663/704 (94%), Gaps = 2/704 (0%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 708 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 649
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 648 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 589
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 588 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 529
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 528 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 469
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 468 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 409
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 408 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 349
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 348 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 289
Query: 778 ggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcgggcgctggagagctc 837
| ||||||||||||||||| |||| ||||||||||||||||| || ||||||||||| ||
Sbjct: 288 gccctcgcggtcgatggcggtgatgagctccttctcgctgaatcgcgcgctggagaggtc 229
Query: 838 gcccgaggggttcatggtcagcaccttcttggccacctgggtcacggtgttcttcaccga 897
|||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 228 gcccgacgggttcatggtcagcaccttcttcgccacctgcgtcaccgtgttcttcaccga 169
Query: 898 cgccttgatgttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgta 957
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 168 cgtcttgatgttctcctcgaggtggcgcaggtcgatggcctggcacagcgccacgatgta 109
Query: 958 ggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacga 1017
|||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||
Sbjct: 108 ggtggacgacatgagcttcaggatgtcgatggcctccgcggtcttcct-ggcggagacga 50
Query: 1018 ggcccagggagttcacgtcctggtttgtgctgctccgcgctctg 1061
||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 49 ggcccagggagttgacgtcctgg-ttgtgctgctccgcgctctg 7
>gb|CW220802.1|CW220802 104_655_11197555_148_37154_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197555, DNA
sequence
Length = 710
Score = 1033 bits (521), Expect = 0.0
Identities = 663/707 (93%), Gaps = 3/707 (0%)
Strand = Plus / Minus
Query: 429 tgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcctctcgccggtca 488
|||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 708 tgatgccgttgaacaccttggtgcactcctcgccgggggacttgagcttctcgcccgtca 649
Query: 489 ggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacgaccggctgtccg 548
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 648 ggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacgaccggctgtccg 589
Query: 549 cgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggcggcctccacct 608
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 588 cgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggcggcctccacct 529
Query: 609 cctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttggagaacacggagg 668
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 528 cccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttggagaacacggagg 469
Query: 669 gctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggcgcgcactttct 728
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 468 gctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggcgcgcagcttcg 409
Query: 729 gcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacacggcctcgcggt 788
|||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 408 tcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacacgccctcgcggt 349
Query: 789 cgatggcgctgatcagctccttctcgctgaagcgggcgctggagagctcgcccgaggggt 848
|||||||| |||| ||||||||||||||||| || ||||||||||| |||||||| ||||
Sbjct: 348 cgatggcggtgatgagctccttctcgctgaatcgcgcgctggagaggtcgcccgacgggt 289
Query: 849 tcatggtcagcaccttcttggccacctgggtcacggtgttcttcaccgacgccttgatgt 908
||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 288 tcatggtcagcaccttcttcgccacctgcgtcaccgtgttcttcaccgacgtcttgatgt 229
Query: 909 tctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgaca 968
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 228 tctcctcgaggtggcgcaggtcgatggcctggcacagcgccacgatgtaggtggacgaca 169
Query: 969 tgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccagggag 1028
||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 168 tgagcttcaggatgtcgatggcctccgcggtcttcct-ggcggagacgaggcccagggag 110
Query: 1029 ttcacgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgccca 1088
|| ||||||||| |||||||||||||||||||| |||| |||||||||||||| |||| |
Sbjct: 109 ttgacgtcctgg-ttgtgctgctccgcgctctggacgt-ggttggtgatggggttgccaa 52
Query: 1089 ngtactggagctcngagcagtaggaggccatggcgatctcggtgccc 1135
|||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 51 ggtactggagctcagagcagtaggaggccatggcgatctccgtgccc 5
>gb|CW220801.1|CW220801 104_655_11197555_116_37153_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197555, DNA
sequence
Length = 642
Score = 952 bits (480), Expect = 0.0
Identities = 601/640 (93%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 401 agcatggggtccacgagcttgccctggctgatgccgacgaacaccttgttgcactcctcg 460
||||| ||||| ||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct: 4 agcatagggtcgacgagcttgccctggttgatgccgttgaacaccttggtgcactcctcg 63
Query: 461 ccgggggacttgagcctctcgccggtcaggaacacgcagccgagctcctcgcgcacgaag 520
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 64 ccgggggacttgagcttctcgcccgtcaggaacacgcagccgagctcctcgcggacgaag 123
Query: 521 cggtacagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtgccctcg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cggtacagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtgccctcg 183
Query: 581 gcgaccgccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcg 640
||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 184 gcgacggcgacgcgggcggcctccacctcccgtggcagcaccgcgcggagctcctcctcg 243
Query: 641 aacctggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagggcg 700
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 aacttggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagcgcg 303
Query: 701 tggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggccgcgtcc 760
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||
Sbjct: 304 tggtccaccagcacggcgcgcagcttcgtcatcagcggcaggctggcgctggccgggtcc 363
Query: 761 tccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcgctgaag 820
|||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct: 364 tccgcgtacgtgaacacgccctcgcggtcgatggcggtgatgagctccttctcgctgaat 423
Query: 821 cgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacctgggtc 880
|| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 424 cgcgcgctggagaggtcgcccgacgggttcatggtcagcaccttcttcgccacctgcgtc 483
Query: 881 acggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctgg 940
|| |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct: 484 accgtgttcttcaccgacgtcttgatgttctcctcgaggtggcgcaggtcgatggcctgg 543
Query: 941 cacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtc 1000
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 544 cacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatggcctccgcggtc 603
Query: 1001 ttcctgggccgagacgaggcccagggagttcacgtcctgg 1040
||||| ||| |||||||||||||||||||| |||||||||
Sbjct: 604 ttcct-ggcggagacgaggcccagggagttgacgtcctgg 642
>gb|CW322470.1|CW322470 104_816_11476115_116_35953_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476115, DNA
sequence
Length = 656
Score = 920 bits (464), Expect = 0.0
Identities = 601/642 (93%), Gaps = 4/642 (0%)
Strand = Plus / Minus
Query: 524 tacagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtgccctcggcg 583
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 656 tacagcgggaacgaccggctgtccgcgatccggttcgccacggtggcggtgccctcggcg 597
Query: 584 accgccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaac 643
|| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 596 acggcgacgcgggcggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaac 537
Query: 644 ctggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagggcgtgg 703
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 536 ttggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtgg 477
Query: 704 tccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggccgcgtcctcc 763
||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||
Sbjct: 476 tccaccagcacggcgcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctcc 417
Query: 764 gcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcgg 823
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct: 416 gcgtacgtgaacacgccctcgcggtcgatggcggtgatgagctccttctcgctgaatcgc 357
Query: 824 gcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacctgggtcacg 883
||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct: 356 gcgctggagaggtcgcccgacgggttcatggtcagcaccttcttcgccacctgcgtcacc 297
Query: 884 gtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctggcac 943
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 296 gtgttcttcaccgacgtcttgatgttctcctcgaggtggcgcaggtcgatggcctggcac 237
Query: 944 agcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttc 1003
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 236 agcgccacgatgtaggtggacgacatgagcttcaggatgtcgatggcctccgcggtcttc 177
Query: 1004 ctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctctgca 1063
|| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct: 176 ct-ggcggagacgaggcccagggagttgacgtcctgg-ttgtgctgctccgcgctctgga 119
Query: 1064 cgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggaggccatggcg 1123
||| |||||||||||||| |||| | |||||||||||| |||||||||||||||||||||
Sbjct: 118 cgt-ggttggtgatggggttgccaaggtactggagctcagagcagtaggaggccatggcg 60
Query: 1124 atctcggtgccccttgaagccgtagtccaggctggggttgcg 1165
||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 59 atctccgtg-cccttgaacccgtagtccaggctggggttgcg 19
>gb|CW388607.1|CW388607 fsbb001f073h01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h01, DNA
sequence
Length = 580
Score = 827 bits (417), Expect = 0.0
Identities = 545/583 (93%), Gaps = 4/583 (0%)
Strand = Plus / Minus
Query: 526 cagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtgccc-tcggcga 584
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 580 cagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtgcccctcggcga 521
Query: 585 ccgccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacc 644
| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 520 cggcgacgcgggcggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaact 461
Query: 645 tggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggt 704
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 460 tggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggt 401
Query: 705 ccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccg 764
|||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||
Sbjct: 400 ccaccagcacggcgcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccg 341
Query: 765 cgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcggg 824
|||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || |
Sbjct: 340 cgtacgtgaacacgccctcgcggtcgatggcggtgatgagctccttctcgctgaatcgcg 281
Query: 825 cgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacctgggtcacgg 884
|||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 280 cgctggagaggtcgcccgacgggttcatggtcagcaccttcttcgccacctgcgtcaccg 221
Query: 885 tgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctggcaca 944
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 220 tgttcttcaccgacgtcttgatgttctcctcgaggtggcgcaggtcgatggcctggcaca 161
Query: 945 gcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcc 1004
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 160 gcgccacgatgtaggtggacgacatgagcttcaggatgtcgatggcctccgcggtcttcc 101
Query: 1005 tgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctctgcac 1064
| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 100 t-ggcggagacgaggcccagggagttgacgtcctgg-ttgtgctgctccgcgctctggac 43
Query: 1065 gtgggttggtgatgggggtgcccangtactggagctcngagca 1107
|| |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 42 gt-ggttggtgatggggttgccaaggtactggagctcagagca 1
>gb|BE360375.1|BE360375 DG1_63_E06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 747 bits (377), Expect = 0.0
Identities = 513/553 (92%), Gaps = 5/553 (0%)
Strand = Plus / Minus
Query: 646 ggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtc 705
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 ggtgatcttggagaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtc 505
Query: 706 caccagcacggcgcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgc 765
||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||
Sbjct: 504 caccagcacggcgcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgc 445
Query: 766 gtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcgggc 825
||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || ||
Sbjct: 444 gtacgtgaacacgccctcgcggtcgatggcggtgatgagctccttctcgctgaatcgcgc 385
Query: 826 gctggagagctcgcccgaggggttcatggtcagcaccttcttggccacctgggtcacggt 885
||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 384 gctggagaggtcgcccgacgggttcatggtcagcaccttcttcgccacctgcgtcaccgt 325
Query: 886 gttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctggcacag 945
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 324 gttcttcaccgacgtcttgatgttctcctcgaggtggcgcaggtcgatggcctggcacag 265
Query: 946 cgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcct 1005
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 264 cgccacgatgtaggtggacgacatgagcttcaggatgtcgatggcctccgcggtcttcct 205
Query: 1006 gggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctctgcacg 1065
||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 204 -ggcggagacgaggcccagggagttgacgtcctgg-ttgtgctgctccgcgctctggacg 147
Query: 1066 tgggttggtgatgggggtgcccangtactggagctcngagcagtaggaggccatggcgat 1125
| |||||||||||||| |||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 146 t-ggttggtgatggggttgccaaggtactggagctcagagcagtaggaggccatggcgat 88
Query: 1126 ctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggccaggtttgagg 1184
||| ||| |||||||| |||||||||||||||||||||| | |||||| ||||| ||||
Sbjct: 87 ctccgtg-cccttgaacccgtagtccaggctggggttgcggctgccggcgaggttggagg 29
Query: 1185 tgagcccgttgtt 1197
|||||||||||||
Sbjct: 28 tgagcccgttgtt 16
>gb|BE360089.1|BE360089 DG1_61_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 737 bits (372), Expect = 0.0
Identities = 508/548 (92%), Gaps = 5/548 (0%)
Strand = Plus / Minus
Query: 651 tcttggagaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccacca 710
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 586 tcttggagaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccacca 527
Query: 711 gcacggcgcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacg 770
|||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 526 gcacggcgcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacg 467
Query: 771 tgaacacggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcgggcgctgg 830
|||||||| ||||||||||||||||| |||| ||||||||||||||||| || |||||||
Sbjct: 466 tgaacacgccctcgcggtcgatggcggtgatgagctccttctcgctgaatcgcgcgctgg 407
Query: 831 agagctcgcccgaggggttcatggtcagcaccttcttggccacctgggtcacggtgttct 890
|||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 406 agaggtcgcccgacgggttcatggtcagcaccttcttcgccacctgcgtcaccgtgttct 347
Query: 891 tcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctggcacagcgcca 950
||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 346 tcaccgacgtcttgatgttctcctcgaggtggcgcaggtcgatggcctggcacagcgcca 287
Query: 951 cgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcctgggcc 1010
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 286 cgatgtaggtggacgacatgagcttcaggatgtcgatggcctccgcggtcttcct-ggcg 228
Query: 1011 gagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctctgcacgtgggt 1070
|||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| |||
Sbjct: 227 gagacgaggcccagggagttgacgtcctgg-ttgtgctgctccgcgctctggacgt-ggt 170
Query: 1071 tggtgatgggggtgcccangtactggagctcngagcagtaggaggccatggcgatctcgg 1130
||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||| |
Sbjct: 169 tggtgatggggttgccaaggtactggagctcagagcagtaggaggccatggcgatctccg 110
Query: 1131 tgccccttgaagccgtagtccaggctggggttgc-gnngccggccaggtttgaggtgagc 1189
|| |||||||| |||||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct: 109 tg-cccttgaacccgtagtccaggctggggttgcggctgccggcgaggttggaggtgagc 51
Query: 1190 ccgttgtt 1197
||||||||
Sbjct: 50 ccgttgtt 43
>gb|CN126243.1|CN126243 RHOH1_16_B03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_B03_A002 3', mRNA sequence
Length = 753
Score = 724 bits (365), Expect = 0.0
Identities = 446/473 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 473 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 414
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 413 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 354
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 353 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 294
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 293 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 234
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 233 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 174
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 173 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 114
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 113 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 54
Query: 778 ggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcgggcgctgg 830
| ||||||||||||||||| |||| ||||||||||||||||| || |||||||
Sbjct: 53 gccctcgcggtcgatggcggtgatgagctccttctcgctgaatcgcgcgctgg 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 645 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 600
>gb|CN138952.1|CN138952 OX1_15_D09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_D09_A002 3', mRNA sequence
Length = 750
Score = 718 bits (362), Expect = 0.0
Identities = 437/462 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 467 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 408
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 407 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 348
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 347 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 288
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 287 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 228
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 227 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 168
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 167 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 108
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 107 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 48
Query: 778 ggcctcgcggtcgatggcgctgatcagctccttctcgctgaa 819
| ||||||||||||||||| |||| |||||||||||||||||
Sbjct: 47 gccctcgcggtcgatggcggtgatgagctccttctcgctgaa 6
Score = 60.0 bits (30), Expect = 5e-007
Identities = 74/87 (85%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| ||||||||||||| |||||
Sbjct: 671 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggattgatca 621
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 620 atcacaaccaaaagtcaacaacgaaga 594
>gb|BE358732.1|BE358732 DG1_31_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 688 bits (347), Expect = 0.0
Identities = 416/439 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 441 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 382
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 381 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 322
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 262
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 261 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 202
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 142
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 141 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 82
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 81 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 22
Query: 778 ggcctcgcggtcgatggcg 796
| |||||||||||||||||
Sbjct: 21 gccctcgcggtcgatggcg 3
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 613 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 568
>gb|BE355038.1|BE355038 DG1_10_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 626
Score = 682 bits (344), Expect = 0.0
Identities = 413/436 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 436 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 377
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 376 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 317
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 316 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 257
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 256 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 197
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 196 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 137
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 136 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 77
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 76 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 17
Query: 778 ggcctcgcggtcgatg 793
| ||||||||||||||
Sbjct: 16 gccctcgcggtcgatg 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 608 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 563
>gb|CN129246.1|CN129246 RHOH1_34_G08.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G08_A002 3', mRNA sequence
Length = 728
Score = 680 bits (343), Expect = 0.0
Identities = 415/439 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 439 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 380
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 379 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 320
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 260
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 259 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 200
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 199 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 140
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 139 gaacacggaggggtcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 80
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 79 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 20
Query: 778 ggcctcgcggtcgatggcg 796
| |||||||||||||||||
Sbjct: 19 gccctcgcggtcgatggcg 1
Score = 56.0 bits (28), Expect = 8e-006
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaagag-cgatcgacg-gc 266
||||| ||||| ||||||||| |||||||||| ||||||||||||| ||| ||||| ||
Sbjct: 611 cacacgtacgggtcgatcaatcacaaccaaaagtcaacaacgaagaaacga-cgacgcgc 553
Query: 267 acgatctggacagacac-gtgtacaggtttta 297
|||||||||||| |||| ||||||| ||||||
Sbjct: 552 acgatctggacatacacggtgtacaagtttta 521
>gb|BG932930.1|BG932930 DG1_69_B03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 689
Score = 668 bits (337), Expect = 0.0
Identities = 406/429 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 429 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 370
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 369 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 310
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 309 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 250
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 249 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 190
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 189 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 130
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 129 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 70
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 69 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 10
Query: 778 ggcctcgcg 786
| |||||||
Sbjct: 9 gccctcgcg 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 633 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 583
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 582 atcacaaccaaaagtcaacaacgaaga 556
>gb|BE355461.1|BE355461 DG1_114_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 652
Score = 660 bits (333), Expect = 0.0
Identities = 399/421 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 421 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 362
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 361 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 302
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 242
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 241 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 182
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 122
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 62
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgtacgtgaacac 777
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 61 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgtacgtgaacac 2
Query: 778 g 778
|
Sbjct: 1 g 1
Score = 54.0 bits (27), Expect = 3e-005
Identities = 75/88 (85%), Gaps = 11/88 (12%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacgg-atcgatc 227
|||||||||||| ||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 626 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggtatcgatc 576
Query: 228 aat-acaaccaaaaatcaacaacgaaga 254
||| |||||||||| |||||||||||||
Sbjct: 575 aatcacaaccaaaagtcaacaacgaaga 548
>gb|CN125016.1|CN125016 RHOH1_8_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_H01_A002 3', mRNA sequence
Length = 735
Score = 638 bits (322), Expect = 0.0
Identities = 388/410 (94%)
Strand = Plus / Minus
Query: 359 ttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgagc 418
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 410 ttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgagc 351
Query: 419 ttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcctc 478
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct: 350 ttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagcttc 291
Query: 479 tcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacgac 538
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 290 tcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacgac 231
Query: 539 cggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggcg 598
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 230 cggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggcg 171
Query: 599 gcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttggag 658
|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 170 gcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttggag 111
Query: 659 aacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggcg 718
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 110 aacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggcg 51
Query: 719 cgcactttctgcatcagcggcaggctgccgctggccgcgtcctccgcgta 768
|||| ||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 50 cgcagcttcgtcatcagcggcaggctggcgctggccgggtcctccgcgta 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 615 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 565
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 564 atcacaaccaaaagtcaacaacgaaga 538
>gb|CF072290.1|CF072290 FE1_7_F11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_7_F11_A002 3', mRNA sequence
Length = 740
Score = 630 bits (318), Expect = e-179
Identities = 384/406 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 406 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 347
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 346 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 287
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 286 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 227
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 226 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 167
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 166 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 107
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 106 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 47
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctcc 763
||||| ||| |||||||||||||||| ||||||||| |||||||
Sbjct: 46 gcgcagcttcgtcatcagcggcaggctggcgctggccgggtcctcc 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 610 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 560
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 559 atcacaaccaaaagtcaacaacgaaga 533
>gb|CW436719.1|CW436719 fsbb001f153h11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f153h11, DNA
sequence
Length = 658
Score = 628 bits (317), Expect = e-178
Identities = 383/405 (94%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 254 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 313
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 314 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 373
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 374 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 433
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 434 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 493
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 494 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 553
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 554 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 613
Query: 718 gcgcactttctgcatcagcggcaggctgccgctggccgcgtcctc 762
||||| ||| |||||||||||||||| ||||||||| ||||||
Sbjct: 614 gcgcaacttcgtcatcagcggcaggctggcgctggccgggtcctc 658
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Plus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 50 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 100
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 101 atcacaaccaaaagtcaacaacgaaga 127
>gb|BI246012.1|BI246012 IP1_66_E07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 617 bits (311), Expect = e-174
Identities = 417/449 (92%), Gaps = 3/449 (0%)
Strand = Plus / Minus
Query: 678 ccgcgtcgccgctgctgagggcgtggtccaccagcacggcgcgcactttctgcatcagcg 737
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct: 453 ccgcgtcgccgctgctgagcgcgtggtccaccagcacggcgcgcagcttcgtcatcagcg 394
Query: 738 gcaggctgccgctggccgcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgc 797
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 393 gcaggctggcgctggccgggtcctccgcgtacgtgaacacgccctcgcggtcgatggcgg 334
Query: 798 tgatcagctccttctcgctgaagcgggcgctggagagctcgcccgaggggttcatggtca 857
|||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||
Sbjct: 333 tgatgagctccttctcgctgaatcgcgcgctggagaggtcgcccgacgggttcatggtca 274
Query: 858 gcaccttcttggccacctgggtcacggtgttcttcaccgacgccttgatgttctcctcga 917
|||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct: 273 gcaccttcttcgccacctgcgtcaccgtgttcttcaccgacgtcttgatgttctcctcga 214
Query: 918 ggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgacatgagcttca 977
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggtggcgcaggtcgatggcctggcacagcgccacgatgtaggtggacgacatgagcttca 154
Query: 978 ggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccagggagttcacgtcc 1037
|||||||||| ||||| ||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 153 ggatgtcgatggcctccgcggtcttcct-ggcggagacgaggcccagggagttgacgtcc 95
Query: 1038 tggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactgga 1097
||| |||||||||||||||||||| |||| |||||||||||||| |||| | ||||||||
Sbjct: 94 tgg-ttgtgctgctccgcgctctggacgt-ggttggtgatggggttgccaaggtactgga 37
Query: 1098 gctcngagcagtaggaggccatggcgatc 1126
|||| ||||||||||||||||||||||||
Sbjct: 36 gctcagagcagtaggaggccatggcgatc 8
>gb|BE361202.1|BE361202 DG1_70_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 398
Score = 615 bits (310), Expect = e-174
Identities = 373/394 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 394 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 335
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 334 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 275
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 215
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 214 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 155
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 154 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 95
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 94 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 35
Query: 718 gcgcactttctgcatcagcggcaggctgccgctg 751
||||| ||| |||||||||||||||| |||||
Sbjct: 34 gcgcagcttcgtcatcagcggcaggctggcgctg 1
>gb|CN135116.1|CN135116 OX1_30_E02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_30_E02_A002 5', mRNA sequence
Length = 792
Score = 611 bits (308), Expect = e-173
Identities = 429/464 (92%), Gaps = 5/464 (1%)
Strand = Plus / Minus
Query: 735 gcggcaggctgccgctggccgcgtcctccgcgtacgtgaacacggcctcgcggtcgatgg 794
||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 792 gcggcaggctggcgctggccgggtcctccgcgtacgtgaacacgccctcgcggtcgatgg 733
Query: 795 cgctgatcagctccttctcgctgaagcgggcgctggagagctcgcccgaggggttcatgg 854
|| |||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 732 cggtgatgagctccttctcgctgaatcgcgcgctggagaggtcgcccgacgggttcatgg 673
Query: 855 tcagcaccttcttggccacctgggtcacggtgttcttcaccgacgccttgatgttctcct 914
||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct: 672 tcagcaccttcttcgccacctgcgtcaccgtgttcttcaccgacgtcttgatgttctcct 613
Query: 915 cgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgacatgagct 974
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cgaggtggcgcaggtcgatggcctggcacagcgccacgatgtaggtggacgacatgagct 553
Query: 975 tcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccagggagttcacg 1034
||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||||| |||
Sbjct: 552 tcaggatgtcgatggcctccgcggtcttcct-ggcggagacgaggcccagggagttgacg 494
Query: 1035 tcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtact 1094
|||||| |||||||||||||||||||| |||| |||||||||||||| |||| | |||||
Sbjct: 493 tcctgg-ttgtgctgctccgcgctctggacgt-ggttggtgatggggttgccaaggtact 436
Query: 1095 ggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccagg 1154
||||||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 435 ggagctcagagcagtaggaggccatggcgatctccgtg-cccttgaacccgtagtccagg 377
Query: 1155 ctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
|||||||||| | |||||| ||||| |||||||||||||||||
Sbjct: 376 ctggggttgcggctgccggcgaggttggaggtgagcccgttgtt 333
>gb|BG239851.1|BG239851 OV1_29_G11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 659
Score = 601 bits (303), Expect = e-170
Identities = 363/383 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 383 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 324
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 323 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 264
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 204
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 203 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 144
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 84
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 83 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 24
Query: 718 gcgcactttctgcatcagcggca 740
||||| ||| |||||||||||
Sbjct: 23 gcgcagcttcgtcatcagcggca 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 587 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 537
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 536 atcacaaccaaaagtcaacaacgaaga 510
>gb|BE355327.1|BE355327 DG1_114_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 597 bits (301), Expect = e-169
Identities = 349/365 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 371 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 312
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 311 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 252
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 192
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 191 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 132
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 131 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 72
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 71 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 12
Query: 718 gcgca 722
|||||
Sbjct: 11 gcgca 7
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 543 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 498
>gb|BE355405.1|BE355405 DG1_114_H09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 597 bits (301), Expect = e-169
Identities = 349/365 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 371 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 312
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 311 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 252
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 192
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 191 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 132
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 131 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 72
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 71 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 12
Query: 718 gcgca 722
|||||
Sbjct: 11 gcgca 7
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 543 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 498
>gb|BG103102.1|BG103102 RHIZ2_18_B11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 571
Score = 597 bits (301), Expect = e-169
Identities = 349/365 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtcgacgag 324
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 323 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 264
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 263 ctcgcccgtcaggaacacgcagcccagctcctcgcggacgaagcggtacagcgggaacga 204
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 203 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 144
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 84
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 83 gaacaccgagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 24
Query: 718 gcgca 722
|||||
Sbjct: 23 gcgca 19
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaa-tacaaccaaaaatcaacaacgaaga 254
|||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 560 cacacatacggatcgatcaattacaaccaaaagtcaacaacgaaga 515
>gb|CD221354.1|CD221354 CCC1_54_F07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_F07_A007 3', mRNA sequence
Length = 666
Score = 597 bits (301), Expect = e-169
Identities = 349/365 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtcgacgag 320
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 319 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 260
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 259 ctcgcccgtcaggaacacgcagcccagctcctcgcggacgaagcggtacagcgggaacga 200
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 199 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 140
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 139 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 80
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacggc 717
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 79 gaacaccgagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacggc 20
Query: 718 gcgca 722
|||||
Sbjct: 19 gcgca 15
Score = 99.6 bits (50), Expect = 6e-019
Identities = 82/89 (92%), Gaps = 4/89 (4%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacac--gcacgcacacatacggatcgat 226
|||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 601 cagctacacaaa-gaagaaagaacaacgccacacacacgcacacacacatacggatcgat 543
Query: 227 caa-tacaaccaaaaatcaacaacgaaga 254
||| ||||||||||| |||||||||||||
Sbjct: 542 caattacaaccaaaagtcaacaacgaaga 514
>gb|BF585576.1|BF585576 FM1_23_B02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 489
Score = 595 bits (300), Expect = e-168
Identities = 418/452 (92%), Gaps = 5/452 (1%)
Strand = Plus / Minus
Query: 747 cgctggccgcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagct 806
||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||| ||||
Sbjct: 489 cgctggccgggtcctccgcgtacgtgaacacgccctcgcgatcgatggcggtgatgagct 430
Query: 807 ccttctcgctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttct 866
||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 429 ccttctcgctgaatcgcgcgctggagaggtcgcccgacgggttcatggtcagcaccttct 370
Query: 867 tggccacctgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgca 926
| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 369 tcgccacctgcgtcaccgtgttcttcaccgacgtcttgatgttctcctcgaggtggcgca 310
Query: 927 ggtccacggcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcga 986
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggtcgatggcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcga 250
Query: 987 tcgcctcggcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtg 1046
| ||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||
Sbjct: 249 tggcctcggcggtcttcct-ggcggagacgaggcccagggagttgacgtcctgg-ttgtg 192
Query: 1047 ctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagc 1106
||||||||||||||| |||| |||||||||||||| |||||| |||||||||||| ||||
Sbjct: 191 ctgctccgcgctctggacgt-ggttggtgatggggttgcccaggtactggagctcagagc 133
Query: 1107 agtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-g 1165
|||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||| |
Sbjct: 132 agtaggaggccatggcgatctccgtg-cccttgaacctgtagtccaggctggggttgcgg 74
Query: 1166 nngccggccaggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||||||||
Sbjct: 73 ctgccggcaaggttggaggtgagcccgttgtt 42
>gb|AW923013.1|AW923013 DG1_48_F12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 449
Score = 593 bits (299), Expect = e-167
Identities = 410/444 (92%), Gaps = 3/444 (0%)
Strand = Plus / Minus
Query: 685 gccgctgctgagggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggct 744
||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 449 gccgctgntgagcgcgtggtccaccagcacggcgcgcagcttcgtcatcagcggcaggct 390
Query: 745 gccgctggccgcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcag 804
| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct: 389 ggcgctggccgggtcctccgcgtacgtgaacacgccctcgcggtcgatggcggtgatgag 330
Query: 805 ctccttctcgctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcacctt 864
||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 329 ctccttctcgctgaatcgcgcgctggagaggtcgcccgacgggttcatggtcagcacctt 270
Query: 865 cttggccacctgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcg 924
||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 269 cttcgccacgtgcgtcaccgtgttcttcaccgacgtcttgatgttctcctcgaggtggcg 210
Query: 925 caggtccacggcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtc 984
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 caggtcgatggcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtc 150
Query: 985 gatcgcctcggcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttg 1044
||| ||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| |||
Sbjct: 149 gatggcctccgcggtcttcct-ggcggagacgaggcccagggagttgacgtcctgg-ttg 92
Query: 1045 tgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctcnga 1104
||||||||||||||||| |||| |||||||||||||| |||| | |||||||||||| ||
Sbjct: 91 tgctgctccgcgctctggacgt-ggttggtgatggggttgccaaggtactggagctcaga 33
Query: 1105 gcagtaggaggccatggcgatctc 1128
||||||||||||||||||||||||
Sbjct: 32 gcagtaggaggccatggcgatctc 9
>gb|BG412632.1|BG412632 OV2_36_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 589 bits (297), Expect = e-166
Identities = 367/389 (94%), Gaps = 1/389 (0%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 391 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgaa 332
Query: 418 c-ttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcc 476
| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 331 ccttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagct 272
Query: 477 tctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacg 536
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 271 tctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacg 212
Query: 537 accggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcggg 596
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 211 accggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcggg 152
Query: 597 cggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgg 656
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 151 cggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgg 92
Query: 657 agaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacgg 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 91 agaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacgg 32
Query: 717 cgcgcactttctgcatcagcggcaggctg 745
|||||| ||| ||||||||||||||||
Sbjct: 31 cgcgcagcttcgtcatcagcggcaggctg 3
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 595 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 545
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 544 atcacaaccaaaagtcaacaacgaaga 518
>gb|BE355472.1|BE355472 DG1_114_H09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 583 bits (294), Expect = e-164
Identities = 349/366 (95%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 372 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 313
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 312 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 253
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 252 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 193
Query: 538 ccggctgtccgcgatccggttcgccacg-ggggcggtgccctcggcgaccgccacgcggg 596
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 192 ccggctgtccgcgatccggttcgccacggggggcggtgccctcggcgacggcgacgcggg 133
Query: 597 cggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgg 656
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 132 cggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgg 73
Query: 657 agaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcacgg 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 72 agaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcacgg 13
Query: 717 cgcgca 722
||||||
Sbjct: 12 cgcgca 7
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 576 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 526
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 525 atcacaaccaaaagtcaacaacgaaga 499
>gb|BG356951.1|BG356951 OV2_12_A10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 468
Score = 581 bits (293), Expect = e-164
Identities = 341/357 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 357 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 298
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 297 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 238
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 237 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 178
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 177 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 118
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 117 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 58
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagcac 714
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 57 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagcac 1
>gb|BE592930.1|BE592930 WS1_92_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 577
Score = 579 bits (292), Expect = e-163
Identities = 340/356 (95%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 222 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 281
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 282 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 341
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 401
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 402 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 461
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 462 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 521
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagca 713
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 522 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagca 577
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Plus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 18 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 68
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 69 atcacaaccaaaagtcaacaacgaaga 95
>gb|CD224791.1|CD224791 CCC1_36_B03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_36_B03_A007 3', mRNA sequence
Length = 663
Score = 579 bits (292), Expect = e-163
Identities = 340/356 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 356 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtcgacgag 297
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 296 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 237
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 236 ctcgcccgtcaggaacacgcagcccagctcctcgcggacgaagcggtacagcgggaacga 177
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 176 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 117
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 116 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 57
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccaccagca 713
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 56 gaacaccgagggctcccgctccgcgtcgccgctgctgagcgcgtggtccaccagca 1
Score = 99.6 bits (50), Expect = 6e-019
Identities = 82/89 (92%), Gaps = 4/89 (4%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacac--gcacgcacacatacggatcgat 226
|||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 578 cagctacacaaa-gaagaaagaacaacgccacacacacgcacacacacatacggatcgat 520
Query: 227 caa-tacaaccaaaaatcaacaacgaaga 254
||| ||||||||||| |||||||||||||
Sbjct: 519 caattacaaccaaaagtcaacaacgaaga 491
>gb|CW297734.1|CW297734 104_780_11462198_148_35653_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462198, DNA
sequence
Length = 619
Score = 573 bits (289), Expect = e-161
Identities = 337/353 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 353 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 294
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 293 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 234
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 233 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 174
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 173 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 114
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 113 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 54
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggtccacca 710
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 53 gaacacggagggctcccgctccgcgtcgccgctgctgagcgcgtggtccacca 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 557 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 507
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 506 atcacaaccaaaagtcaacaacgaaga 480
>gb|CD223110.1|CD223110 CCC1_26_F03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_F03_A007 3', mRNA sequence
Length = 662
Score = 561 bits (283), Expect = e-158
Identities = 331/347 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 347 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtcgacgag 288
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 287 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 228
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 227 ctcgcccgtcaggaacacgcagcccagctcctcgcggacgaagcggtacagcgggaacga 168
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 167 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 108
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 107 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 48
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgtggt 704
|||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 47 gaacaccgagggctcccgctccgcgtcgccgctgctgagcgcgtggt 1
Score = 99.6 bits (50), Expect = 6e-019
Identities = 82/89 (92%), Gaps = 4/89 (4%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacac--gcacgcacacatacggatcgat 226
|||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 569 cagctacacaaa-gaagaaagaacaacgccacacacacgcacacacacatacggatcgat 511
Query: 227 caa-tacaaccaaaaatcaacaacgaaga 254
||| ||||||||||| |||||||||||||
Sbjct: 510 caattacaaccaaaagtcaacaacgaaga 482
>gb|CD224320.1|CD224320 CCC1_33_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_33_H03_A007 3', mRNA sequence
Length = 651
Score = 555 bits (280), Expect = e-156
Identities = 328/344 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 344 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtcgacgag 285
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 284 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 225
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 224 ctcgcccgtcaggaacacgcagcccagctcctcgcggacgaagcggtacagcgggaacga 165
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 164 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 105
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 104 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 45
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgctgagggcgt 701
|||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 44 gaacaccgagggctcccgctccgcgtcgccgctgctgagcgcgt 1
Score = 99.6 bits (50), Expect = 6e-019
Identities = 82/89 (92%), Gaps = 4/89 (4%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacac--gcacgcacacatacggatcgat 226
|||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 566 cagctacacaaa-gaagaaagaacaacgccacacacacgcacacacacatacggatcgat 508
Query: 227 caa-tacaaccaaaaatcaacaacgaaga 254
||| ||||||||||| |||||||||||||
Sbjct: 507 caattacaaccaaaagtcaacaacgaaga 479
>gb|CX608397.1|CX608397 ANR1_38_H10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_H10_A002 3', mRNA sequence
Length = 616
Score = 535 bits (270), Expect = e-150
Identities = 318/334 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 334 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 275
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 274 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 215
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 214 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 155
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 154 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 95
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 94 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 35
Query: 658 gaacacggagggctcccgctccgcgtcgccgctg 691
| ||||||||||||||||||||||||||||||||
Sbjct: 34 ggacacggagggctcccgctccgcgtcgccgctg 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 538 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 488
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 487 atcacaaccaaaagtcaacaacgaaga 461
>gb|CX622505.1|CX622505 GABR1_64_H04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_H04_A002 3', mRNA sequence
Length = 608
Score = 531 bits (268), Expect = e-149
Identities = 319/336 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||
Sbjct: 336 gttgatgggcagcggcttgccgtcccactccttgaggtactctagcatagggtcgacaag 277
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 276 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 217
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 216 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 157
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 156 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 97
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 96 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 37
Query: 658 gaacacggagggctcccgctccgcgtcgccgctgct 693
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gaacacggagggctcccgctccgcgtcgccgctgct 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 508 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 463
>gb|AW672134.1|AW672134 LG1_357_D06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 460
Score = 523 bits (264), Expect = e-146
Identities = 376/408 (92%), Gaps = 5/408 (1%)
Strand = Plus / Minus
Query: 791 atggcgctgatcagctccttctcgctgaagcgggcgctggagagctcgcccgaggggttc 850
|||||| |||| ||||||||||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 460 atggcggtgatgagctccttctcgctgaatcgcgcgctggagaggtcgcccgacgggttc 401
Query: 851 atggtcagcaccttcttggccacctgggtcacggtgttcttcaccgacgccttgatgttc 910
||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||
Sbjct: 400 atggtcagcaccttcttcgccacctgcgtcaccgtgttcttcaccgacgtcttgatgttc 341
Query: 911 tcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgacatg 970
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcctcgaggtggcgcaggtcgatggcctggcacagcgccacgatgtaggtggacgacatg 281
Query: 971 agcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccagggagtt 1030
||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 280 agcttcaggatgtcgatggcctccgcggtcttcct-ggcggagacgaggcccagggagtt 222
Query: 1031 cacgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccang 1090
||||||||| |||||||||||||||||||| |||| |||||||||||||| |||| | |
Sbjct: 221 gacgtcctgg-ttgtgctgctccgcgctctggacgt-ggttggtgatggggttgccaagg 164
Query: 1091 tactggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtc 1150
||||||||||| |||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 163 tactggagctcagagcagtaggaggccatggcgatctccgtg-cccttgaacccgtagtc 105
Query: 1151 caggctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
|||||||||||||| | |||||| ||||| |||||||||||||||||
Sbjct: 104 caggctggggttgcggctgccggcgaggttggaggtgagcccgttgtt 57
>gb|BE359598.1|BE359598 DG1_54_H12.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 328
Score = 523 bits (264), Expect = e-146
Identities = 312/328 (95%)
Strand = Plus / Minus
Query: 365 ggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgagcttgccc 424
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 328 ggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgagcttgccc 269
Query: 425 tggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcctctcgccg 484
||| |||||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 268 tggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagcttctcgccc 209
Query: 485 gtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacgaccggctg 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 208 gtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacgaccggctg 149
Query: 545 tccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggcggcctcc 604
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 148 tccgcgatccggttcgccacgggggcggtgccctcagcgacggcgacgcgggcggcctcc 89
Query: 605 acctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttggagaacacg 664
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 88 acctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttggagaacacg 29
Query: 665 gagggctcccgctccgcgtcgccgctgc 692
||||||||||||||||||||||||||||
Sbjct: 28 gagggctcccgctccgcgtcgccgctgc 1
>gb|BE367050.1|BE367050 PI1_42_D08.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 445
Score = 519 bits (262), Expect = e-145
Identities = 307/322 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 322 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 263
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 262 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 203
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 143
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 142 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 83
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 82 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 23
Query: 658 gaacacggagggctcccgctcc 679
||||||||||||||||||||||
Sbjct: 22 gaacacggagggctcccgctcc 1
>gb|CN131413.1|CN131413 RHOH1_48_A02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_48_A02_A002 3', mRNA sequence
Length = 760
Score = 511 bits (258), Expect = e-143
Identities = 300/314 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 482 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 423
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 422 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 363
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 362 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 303
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 302 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 243
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 242 ggcctccacctcccggggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 183
Query: 658 gaacacggagggct 671
||||||||||||||
Sbjct: 182 gaacacggagggct 169
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 654 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 609
>gb|BM318326.1|BM318326 PI1_77_C08.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 488 bits (246), Expect = e-136
Identities = 291/306 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 306 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 247
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 246 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 187
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 186 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 127
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 126 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 67
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 66 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 7
Query: 658 gaacac 663
||||||
Sbjct: 6 gaacac 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 510 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 460
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 459 atcacaaccaaaagtcaacaacgaaga 433
>gb|AW745482.1|AW745482 WS1_35_G01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 521
Score = 476 bits (240), Expect = e-132
Identities = 285/300 (95%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 222 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 281
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 282 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 341
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 401
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 402 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 461
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 462 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 521
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Plus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 18 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 68
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 69 atcacaaccaaaagtcaacaacgaaga 95
>gb|BE360475.1|BE360475 DG1_63_E06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 372
Score = 476 bits (240), Expect = e-132
Identities = 285/300 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 300 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 241
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 240 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 181
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 180 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 121
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 120 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 61
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 60 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 1
>gb|BG932961.1|BG932961 DG1_69_E04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 476 bits (240), Expect = e-132
Identities = 285/300 (95%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 300 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 241
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 240 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 181
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 180 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 121
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 120 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 61
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 60 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgga 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 504 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 454
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 453 atcacaaccaaaagtcaacaacgaaga 427
>gb|BE356652.1|BE356652 DG1_126_A06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 417
Score = 474 bits (239), Expect = e-132
Identities = 284/299 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 299 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 240
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 239 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 180
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 179 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 120
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 119 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 60
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgg 656
||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 59 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgg 1
>gb|CD431991.1|CD431991 ETH1_12_C08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_12_C08_A002 3', mRNA sequence
Length = 580
Score = 474 bits (239), Expect = e-132
Identities = 284/299 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 299 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 240
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 239 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 180
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 179 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 120
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 119 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgacggcgacgcgggc 60
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgg 656
||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 59 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgatcttgg 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 503 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 453
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 452 atcacaaccaaaagtcaacaacgaaga 426
>gb|CF072697.1|CF072697 FE1_25_E09.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_E09_A002 3', mRNA sequence
Length = 597
Score = 456 bits (230), Expect = e-126
Identities = 278/294 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 294 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 235
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 234 cttgccctggttgatgccggtgaacaccttggtgcactcctcgccgggggacttgagctt 175
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 174 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 115
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 114 ccggctgtccgcgatccggttcgccgcgggggcggtgccctcggcgacggcgacgcgggc 55
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgat 651
||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct: 54 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaacttggtgat 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 498 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 448
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 447 atcacaaccaaaagtcaacaacgaaga 421
>gb|CD426231.1|CD426231 SA1_19_D09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_19_D09_A002 3', mRNA sequence
Length = 595
Score = 450 bits (227), Expect = e-124
Identities = 271/286 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 289 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 230
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 229 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 170
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 169 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 110
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 109 ccggctgtccgcgatccggttcgccacgggggcggtgncctcggcgacggcgacgcgggc 50
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaac 643
||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 49 ggcctccacctcccgtggcagcaccgcgcggagctcctcctcgaac 4
Score = 67.9 bits (34), Expect = 2e-009
Identities = 75/87 (86%), Gaps = 10/87 (11%)
Strand = Plus / Minus
Query: 169 cagctacacaaaagaagaaagagcaacgccacacacgcacgcacacatacggatcgatca 228
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct: 493 cagctacacaaa-gaagaaagaacaacgccaca--------cacacatacggatcgatca 443
Query: 229 at-acaaccaaaaatcaacaacgaaga 254
|| |||||||||| |||||||||||||
Sbjct: 442 atcacaaccaaaagtcaacaacgaaga 416
>gb|BI211453.1|BI211453 IP1_57_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 562
Score = 428 bits (216), Expect = e-118
Identities = 264/280 (94%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 280 gttgatgggcagcggcttgccgtcccactccttgaggcactctagcatagggtcgacgag 221
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct: 220 cttgccctggttgatgccgttgaacaccttggtgcactcctcgccgggggacttgagctt 161
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 160 ctcgcccgtcaggaacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 101
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 100 ccggctgtccgcgatccggttcgccacgggggtagtgccctcggcgacggcaacgcgggc 41
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcc 637
||||||||||||| | ||||||||||||||||||||||||
Sbjct: 40 ggcctccacctcccgtggcagcaccgcgcggagctcctcc 1
Score = 67.9 bits (34), Expect = 2e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 210 cacacatacggatcgatcaat-acaaccaaaaatcaacaacgaaga 254
||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 452 cacacatacggatcgatcaatcacaaccaaaagtcaacaacgaaga 407
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 370,223
Number of Sequences: 832831
Number of extensions: 370223
Number of successful extensions: 109265
Number of sequences better than 0.5: 208
Number of HSP's better than 0.5 without gapping: 206
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 108142
Number of HSP's gapped (non-prelim): 679
length of query: 1197
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1177
effective length of database: 474,703,049
effective search space: 558725488673
effective search space used: 558725488673
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)