BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805320.2.1
(955 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE366544.1|BE366544 PI1_34_F12.g1_A002 Pathogen induced ... 519 e-145
gb|BG239932.1|BG239932 OV1_30_H06.g1_A002 Ovary 1 (OV1) Sor... 519 e-145
gb|BG487965.1|BG487965 RHIZ2_61_E03.g1_A003 Rhizome2 (RHIZ2... 519 e-145
gb|CN131701.1|CN131701 OX1_1_F12.g1_A002 Oxidatively-stress... 519 e-145
gb|CX612033.1|CX612033 ANR1_28_D06.b1_A002 Anaerobic roots ... 519 e-145
gb|BG053951.1|BG053951 OV2_2_B11.g1_A002 Ovary 2 (OV2) Sorg... 511 e-143
gb|BM318034.1|BM318034 PI1_36_C08.g9_A002 Pathogen induced ... 511 e-143
gb|CN125562.1|CN125562 RHOH1_11_G08.g1_A002 Acid- and alkal... 511 e-143
gb|CX612123.1|CX612123 ANR1_28_D06.g1_A002 Anaerobic roots ... 511 e-143
gb|CN125477.1|CN125477 RHOH1_11_G08.b1_A002 Acid- and alkal... 504 e-141
gb|CF484178.1|CF484178 POL1_3_D08.g1_A002 Pollen Sorghum bi... 484 e-135
gb|AW284989.1|AW284989 LG1_296_H10.g1_A002 Light Grown 1 (L... 478 e-133
gb|CB928751.1|CB928751 ABA1_24_C07.b1_A012 Abscisic acid-tr... 476 e-132
gb|BQ656096.1|BQ656096 pRC1071 Sorghum halepense rhizome cD... 446 e-123
gb|BG488263.1|BG488263 RHIZ2_61_E03.b1_A003 Rhizome2 (RHIZ2... 428 e-118
gb|BG558197.1|BG558197 RHIZ2_64_C07.b1_A003 Rhizome2 (RHIZ2... 428 e-118
gb|AW564595.1|AW564595 LG1_296_H10.b1_A002 Light Grown 1 (L... 420 e-115
gb|BE594557.1|BE594557 PI1_34_F12.b1_A002 Pathogen induced ... 420 e-115
gb|BG240510.1|BG240510 OV1_30_H06.b1_A002 Ovary 1 (OV1) Sor... 420 e-115
gb|BI141592.1|BI141592 IP1_54_D07.b1_A002 Immature pannicle... 420 e-115
gb|BI141676.1|BI141676 IP1_55_E07.b1_A002 Immature pannicle... 420 e-115
gb|BG050646.1|BG050646 FM1_70_H06.g1_A003 Floral-Induced Me... 418 e-115
gb|BG054174.1|BG054174 OV2_2_B11.b1_A002 Ovary 2 (OV2) Sorg... 412 e-113
gb|BI141591.1|BI141591 IP1_54_D06.b1_A002 Immature pannicle... 412 e-113
gb|AI724440.1|AI724440 RHIZ1_36_G04.y2_A001 Rhizome1 (RHIZ1... 410 e-113
gb|BG050807.1|BG050807 FM1_70_H06.b1_A003 Floral-Induced Me... 406 e-111
gb|CB928850.1|CB928850 ABA1_24_C07.g1_A012 Abscisic acid-tr... 402 e-110
gb|CF761118.1|CF761118 DSAF1_71_D03.b1_A011 Drought-stresse... 377 e-102
gb|BE594685.1|BE594685 PI1_36_C08.b1_A002 Pathogen induced ... 345 5e-093
gb|AI724616.1|AI724616 RHIZ1_6_F04.y2_A001 Rhizome1 (RHIZ1)... 315 4e-084
gb|BG053601.1|BG053601 RHIZ2_11_D05.g1_A003 Rhizome2 (RHIZ2... 293 2e-077
gb|BE592623.1|BE592623 WS1_95_H09.b1_A002 Water-stressed 1 ... 287 9e-076
gb|BE592748.1|BE592748 WS1_95_H09.g1_A002 Water-stressed 1 ... 287 9e-076
gb|BE594755.1|BE594755 PI1_45_B03.g1_A002 Pathogen induced ... 287 9e-076
gb|BG605755.1|BG605755 RHIZ2_81_B03.g1_A003 Rhizome2 (RHIZ2... 287 9e-076
gb|BI141325.1|BI141325 IP1_54_D07.g1_A002 Immature pannicle... 285 4e-075
gb|CF760018.1|CF760018 DSAF1_54_E06.b1_A011 Drought-stresse... 280 2e-073
gb|AW282951.1|AW282951 LG1_304_B08.g1_A002 Light Grown 1 (L... 248 8e-064
gb|BG560747.1|BG560747 RHIZ2_64_C07.g1_A003 Rhizome2 (RHIZ2... 236 3e-060
gb|CW202599.1|CW202599 104_628_11185177_148_37085_001 Sorgh... 234 1e-059
gb|BG053900.1|BG053900 RHIZ2_11_D05.b1_A003 Rhizome2 (RHIZ2... 234 1e-059
gb|BG649642.1|BG649642 RHIZ2_81_B03.b1_A003 Rhizome2 (RHIZ2... 234 1e-059
gb|CW337184.1|CW337184 104_836_11484012_116_36111_034 Sorgh... 218 7e-055
gb|BZ421646.1|BZ421646 hz32f10.b1 WGS-SbicolorF (DH5a methy... 216 3e-054
gb|BI141324.1|BI141324 IP1_54_D06.g1_A002 Immature pannicle... 216 3e-054
gb|BI141404.1|BI141404 IP1_55_E07.g1_A002 Immature pannicle... 208 7e-052
gb|CL190592.1|CL190592 104_408_10906185_114_32483_033 Sorgh... 202 4e-050
gb|BG048184.1|BG048184 OV1_28_F12.g1_A002 Ovary 1 (OV1) Sor... 194 1e-047
gb|BI141522.1|BI141522 IP1_53_C08.b1_A002 Immature pannicle... 194 1e-047
gb|CD461837.1|CD461837 SA1_35_E09.g1_A002 Salicylic acid-tr... 194 1e-047
gb|AW679245.1|AW679245 WS1_23_A07.b1_A002 Water-stressed 1 ... 190 2e-046
gb|BG558198.1|BG558198 RHIZ2_64_C08.b1_A003 Rhizome2 (RHIZ2... 163 4e-038
gb|CD232727.1|CD232727 SS1_1_C06.b1_A012 Salt-stressed seed... 151 1e-034
gb|CD229437.1|CD229437 CCC1_15_F03.g1_A007 Callus culture/c... 147 2e-033
gb|BG047861.1|BG047861 OV1_28_F12.b1_A002 Ovary 1 (OV1) Sor... 113 3e-023
gb|CL178014.1|CL178014 104_385_10894257_116_31914_321 Sorgh... 105 7e-021
gb|CW133362.1|CW133362 104_517_11116720_148_34813_062 Sorgh... 105 7e-021
gb|CW321915.1|CW321915 104_815_11475810_148_35941_071 Sorgh... 105 7e-021
gb|AW679325.1|AW679325 WS1_23_A07.g1_A002 Water-stressed 1 ... 103 3e-020
gb|BG560748.1|BG560748 RHIZ2_64_C08.g1_A003 Rhizome2 (RHIZ2... 103 3e-020
gb|CD462936.1|CD462936 ETH1_41_B01.b1_A002 Ethylene-treated... 103 3e-020
gb|CW387544.1|CW387544 fsbb001f071o24f0 Sorghum methylation... 100 5e-019
gb|CD422868.1|CD422868 SA1_38_A08.b1_A002 Salicylic acid-tr... 92 1e-016
gb|CD422892.1|CD422892 SA1_38_A08.g1_A002 Salicylic acid-tr... 92 1e-016
gb|CL178015.1|CL178015 104_385_10894257_148_31913_321 Sorgh... 60 4e-007
gb|CW103296.1|CW103296 104_471_11011806_148_34425_017 Sorgh... 40 0.37
gb|CW134736.1|CW134736 104_519_11117466_116_34831_079 Sorgh... 40 0.37
gb|CW171344.1|CW171344 104_582_11155688_148_36527_030 Sorgh... 40 0.37
gb|CW339200.1|CW339200 104_839_11485146_116_36137_067 Sorgh... 40 0.37
gb|CW451607.1|CW451607 fsbb001f191m01f0 Sorghum methylation... 40 0.37
>gb|BE366544.1|BE366544 PI1_34_F12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 641
Score = 519 bits (262), Expect = e-145
Identities = 298/310 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 330
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 329 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 270
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 269 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 210
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 209 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 150
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 149 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 90
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 89 aaccggcctt 80
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 542 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 483
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 482 caaaatacttacaaccatta 463
Score = 103 bits (52), Expect = 3e-020
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttg 715
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttg 1
>gb|BG239932.1|BG239932 OV1_30_H06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 519 bits (262), Expect = e-145
Identities = 298/310 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 380
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 379 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 320
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 319 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 260
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 259 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 200
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 199 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 140
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 139 aaccggcctt 130
Score = 178 bits (90), Expect = 6e-043
Identities = 99/102 (97%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 43
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtg 765
|| |||||||||||||||||||||||||| |||||||||||
Sbjct: 42 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 592 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 533
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 532 caaaatacttacaaccatta 513
>gb|BG487965.1|BG487965 RHIZ2_61_E03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 568
Score = 519 bits (262), Expect = e-145
Identities = 298/310 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 311
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 310 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 251
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 250 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 191
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 190 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 131
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 130 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 71
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 70 aaccggcctt 61
Score = 113 bits (57), Expect = 3e-023
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 189 ttaataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactc 248
|||||||||||||||||||||||| ||| |||| | | |||||| |||||||||||||||
Sbjct: 524 ttaataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactc 465
Query: 249 ccaaaatacttacaaccatta 269
|||||||||||||||||||||
Sbjct: 464 ccaaaatacttacaaccatta 444
Score = 65.9 bits (33), Expect = 6e-009
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattacctt 696
|||||||||||||||||||||||||||||||||
Sbjct: 33 atgtacgtgcttgttgcagtactcgattacctt 1
>gb|CN131701.1|CN131701 OX1_1_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_1_F12_A002 5', mRNA sequence
Length = 757
Score = 519 bits (262), Expect = e-145
Identities = 298/310 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 587
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 586 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 527
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 526 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 467
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 466 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 407
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 406 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 347
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 346 aaccggcctt 337
Score = 428 bits (216), Expect = e-118
Identities = 261/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 250
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagcgggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 190
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 189 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 130
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 129 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 70
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 69 cactcgccggatcggatcgaggacggaaccctagct 34
Score = 71.9 bits (36), Expect = 1e-010
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 234 caagcaaagtgactcccaaaatacttacaaccatta 269
||||||||||||||||||||||||||||||||||||
Sbjct: 755 caagcaaagtgactcccaaaatacttacaaccatta 720
>gb|CX612033.1|CX612033 ANR1_28_D06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_28_D06_A002 3', mRNA sequence
Length = 743
Score = 519 bits (262), Expect = e-145
Identities = 298/310 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 435
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 434 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 375
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 374 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 315
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 314 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 255
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 195
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 194 aaccggcctt 185
Score = 272 bits (137), Expect = 6e-071
Identities = 149/153 (97%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 98
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 97 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 38
Query: 784 catcgccaccgcctcttccacctcgaactcctc 816
||||||||||||||| |||||||||||||||||
Sbjct: 37 catcgccaccgcctcctccacctcgaactcctc 5
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 647 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 588
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 587 caaaatacttacaaccatta 568
>gb|BG053951.1|BG053951 OV2_2_B11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 626
Score = 511 bits (258), Expect = e-143
Identities = 297/310 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 365
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 364 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 305
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 304 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 245
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 244 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 185
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 184 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtagtcgg 125
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 124 aaccggcctt 115
Score = 141 bits (71), Expect = 1e-031
Identities = 83/87 (95%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 28
Query: 724 aagagggatgccgttgtcggcgcagtc 750
|| |||||||| |||||||||||||
Sbjct: 27 gagcgggatgcccgtgtcggcgcagtc 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 577 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 518
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 517 caaaatacttacaaccatta 498
>gb|BM318034.1|BM318034 PI1_36_C08.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 559
Score = 511 bits (258), Expect = e-143
Identities = 294/306 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 247
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 246 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 187
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 186 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 127
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 126 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 67
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 66 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 7
Query: 627 aaccgg 632
||||||
Sbjct: 6 aaccgg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 459 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 400
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 399 caaaatacttacaaccatta 380
>gb|CN125562.1|CN125562 RHOH1_11_G08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_G08_A002 5', mRNA sequence
Length = 826
Score = 511 bits (258), Expect = e-143
Identities = 297/310 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 609
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 608 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 549
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 548 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 489
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 488 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 429
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 428 tcttgaggtcctcaccggaggcggcggtgctgtcggcggcggcggcacccacgtcgtcgg 369
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 368 aaccggcctt 359
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 272
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 271 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 212
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 211 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 152
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 151 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 92
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 91 cactcgccggatcggatcgaggacggaaccctagct 56
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 821 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 762
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 761 caaaatacttacaaccatta 742
>gb|CX612123.1|CX612123 ANR1_28_D06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_28_D06_A002 5', mRNA sequence
Length = 763
Score = 511 bits (258), Expect = e-143
Identities = 297/310 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 598
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 597 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 538
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 537 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 478
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 477 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 418
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 417 tcttgaggtcctcacccgaggcggcggtgctgttggcggcggcggcacccacgtcgtcgg 358
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 357 aaccggcctt 348
Score = 414 bits (209), Expect = e-114
Identities = 257/273 (94%), Gaps = 5/273 (1%)
Strand = Plus / Minus
Query: 667 tacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaag 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 317 tacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagggag 258
Query: 727 agggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccat 786
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 cgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactccat 198
Query: 787 cgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatctt 846
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct: 197 cgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcatttt 138
Query: 847 cttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtgcac 901
||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 137 cttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgagcac 78
Query: 902 tcggcggatcggatcgaggacggaaccctagct 934
||| |||||||||||||||||||||||||||||
Sbjct: 77 tcgccggatcggatcgaggacggaaccctagct 45
Score = 65.9 bits (33), Expect = 6e-009
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 237 gcaaagtgactcccaaaatacttacaaccatta 269
|||||||||||||||||||||||||||||||||
Sbjct: 763 gcaaagtgactcccaaaatacttacaaccatta 731
>gb|CN125477.1|CN125477 RHOH1_11_G08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_G08_A002 3', mRNA sequence
Length = 765
Score = 504 bits (254), Expect = e-141
Identities = 296/310 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 422
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 421 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 362
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 361 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 302
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 301 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 242
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgg 626
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 241 tcttgaggtcctcaccggaggcggcggtgctgtcggcggcggcggcacccacgtcgtcag 182
Query: 627 aaccggcctt 636
||||||||||
Sbjct: 181 aaccggcctt 172
Score = 254 bits (128), Expect = 1e-065
Identities = 140/144 (97%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 85
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 84 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 25
Query: 784 catcgccaccgcctcttccacctc 807
||||||||||||||| ||||||||
Sbjct: 24 catcgccaccgcctcctccacctc 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 634 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 575
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 574 caaaatacttacaaccatta 555
>gb|CF484178.1|CF484178 POL1_3_D08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_D08_A002 5', mRNA sequence
Length = 645
Score = 484 bits (244), Expect = e-135
Identities = 277/288 (96%)
Strand = Plus / Minus
Query: 349 ccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattcttgatgtt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattcttgatgtt 586
Query: 409 gaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
|||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 585 gaaggtcttgcggatctcctctggggttttgcccttgatcatgtcagcaacagtctggca 526
Query: 469 ggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatgaggtcgaaaag 528
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 525 ggtcaggtccagcagacccttgatgttgagatagtttgcagccaagatgaggtcgaagag 466
Query: 529 cgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcctcaccggaggc 588
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 465 cgtggcctggtcgaccttgacgaagtcagcatcccaattcttgaggtcctcaccggaggc 406
Query: 589 ggcggtgctgttggcggaggcggcacccacgtcgtcggaaccggcctt 636
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 405 ggcggtgctgttggcggcggcggcacccacgtcgtcggaaccggcctt 358
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 271
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 270 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 211
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 210 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 151
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 150 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 91
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 90 cactcgccggatcggatcgaggacggaaccctagct 55
>gb|AW284989.1|AW284989 LG1_296_H10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 478 bits (241), Expect = e-133
Identities = 277/289 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 230
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 229 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 170
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 169 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 110
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 109 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 50
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacc 615
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 49 tcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacc 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 442 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 383
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 382 caaaatacttacaaccatta 363
>gb|CB928751.1|CB928751 ABA1_24_C07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_C07_A012 3', mRNA sequence
Length = 563
Score = 476 bits (240), Expect = e-132
Identities = 284/299 (94%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 240
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 239 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 180
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 179 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 120
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
Sbjct: 119 cagccnagatgaggtcgaagagcgtggcctggtcgaccttgacggagtcagcatcccaat 60
Query: 567 tcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcg 625
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 59 tcttgaggtcctcaccggaagcggcggtgctgttggcggcggcggcacccacgtcgtcg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 452 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 393
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 392 caaaatacttacaaccatta 373
>gb|BQ656096.1|BQ656096 pRC1071 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1071, mRNA sequence
Length = 539
Score = 446 bits (225), Expect = e-123
Identities = 258/269 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 210
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 209 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 150
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 149 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 90
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 89 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 30
Query: 567 tcttgaggtcctcaccggaggcggcggtg 595
|||||||||||||||||||||||||||||
Sbjct: 29 tcttgaggtcctcaccggaggcggcggtg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 422 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 363
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 362 caaaatacttacaaccatta 343
>gb|BG488263.1|BG488263 RHIZ2_61_E03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 453
Score = 428 bits (216), Expect = e-118
Identities = 261/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 260
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 200
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 199 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 140
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 139 tttcttctcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 80
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 79 cactcgccggatcggatcgaggacggaaccctagct 44
Score = 172 bits (87), Expect = 4e-041
Identities = 102/107 (95%)
Strand = Plus / Minus
Query: 530 gtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcctcaccggaggcg 589
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 453 gtggcctggtcgaccttgacgaagtcagcatcccaattcttgaggtcctcaccggaggcg 394
Query: 590 gcggtgctgttggcggaggcggcacccacgtcgtcggaaccggcctt 636
|||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 393 gcggtgctgttggcggcggcggcacccacgtcgtcgggagcggcctt 347
>gb|BG558197.1|BG558197 RHIZ2_64_C07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 404
Score = 428 bits (216), Expect = e-118
Identities = 261/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 259
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 258 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 199
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 198 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 139
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 138 tttcttctcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 79
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 78 cactcgccggatcggatcgaggacggaaccctagct 43
Score = 109 bits (55), Expect = 5e-022
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 578 tcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcggaaccggcctt 636
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 tcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcggaaccggcctt 346
>gb|AW564595.1|AW564595 LG1_296_H10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 336
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 274
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 273 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 214
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 213 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 154
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 153 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 94
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 93 cactcgccggatcggatcgaggacggaaccctagct 58
>gb|BE594557.1|BE594557 PI1_34_F12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 261
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 201
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 200 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 141
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 140 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 81
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 80 cactcgccggatcggatcgaggacggaaccctagct 45
Score = 319 bits (161), Expect = 3e-085
Identities = 182/189 (96%)
Strand = Plus / Minus
Query: 448 catgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgc 507
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 536 catgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttgc 477
Query: 508 agccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagtt 567
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 476 agccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaatt 417
Query: 568 cttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcgga 627
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 416 cttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcgga 357
Query: 628 accggcctt 636
|||||||||
Sbjct: 356 accggcctt 348
>gb|BG240510.1|BG240510 OV1_30_H06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 260
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 200
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 199 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 140
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 139 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 80
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 79 cactcgccggatcggatcgaggacggaaccctagct 44
Score = 325 bits (164), Expect = 4e-087
Identities = 185/192 (96%)
Strand = Plus / Minus
Query: 445 gatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 538 gatcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtt 479
Query: 505 tgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatccca 564
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 478 tgcagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatccca 419
Query: 565 gttcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtc 624
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 attcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtc 359
Query: 625 ggaaccggcctt 636
||||||||||||
Sbjct: 358 ggaaccggcctt 347
>gb|BI141592.1|BI141592 IP1_54_D07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 351
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 266
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 206
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 205 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 146
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 145 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 86
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 85 cactcgccggatcggatcgaggacggaaccctagct 50
>gb|BI141676.1|BI141676 IP1_55_E07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 403
Score = 420 bits (212), Expect = e-115
Identities = 260/276 (94%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 266
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 206
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 205 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 146
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 145 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 86
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 85 cactcgccggatcggatcgaggacggaaccctagct 50
Score = 93.7 bits (47), Expect = 3e-017
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 586 ggcggcggtgctgttggcggaggcggcacccacgtcgtcggaaccggcctt 636
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 403 ggcggcggtgctgttggcggcggcggcacccacgtcgtcggaaccggcctt 353
>gb|BG050646.1|BG050646 FM1_70_H06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 486
Score = 418 bits (211), Expect = e-115
Identities = 244/255 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 196
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 195 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 136
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 135 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 76
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 75 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 16
Query: 567 tcttgaggtcctcac 581
|||||||||||||||
Sbjct: 15 tcttgaggtcctcac 1
Score = 103 bits (52), Expect = 3e-020
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| |||||||||||||||
Sbjct: 408 taataaccgaccattgaccacatcagttttacccaacacattctgaagcaaagtgactcc 349
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 348 caaaatacttacaaccatta 329
>gb|BG054174.1|BG054174 OV2_2_B11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 389
Score = 412 bits (208), Expect = e-113
Identities = 259/276 (93%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 258
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 257 gagcgggatgccgttgtcggcgcagtcatcttcgatcctgtggcggatggtctgcgactc 198
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 197 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 138
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 137 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 78
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 77 cactcgccggatcggatcgaggacggaaccctagct 42
Score = 73.8 bits (37), Expect = 3e-011
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 592 ggtgctgttggcggaggcggcacccacgtcgtcggaaccggcctt 636
|||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 389 ggtgctgttggcggcgccggcacccacgtcgtcggaaccggcctt 345
>gb|BI141591.1|BI141591 IP1_54_D06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 412 bits (208), Expect = e-113
Identities = 259/276 (93%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 266
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 206
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 205 catcgccaccgcctcctccacctggaactcctcaccatctgagcttttgagggttatcat 146
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 145 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 86
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 85 cactcgccggatcggatcgaggacggaaccctagct 50
>gb|AI724440.1|AI724440 RHIZ1_36_G04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 542
Score = 410 bits (207), Expect = e-113
Identities = 240/251 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 192
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 191 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 132
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 131 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 72
Query: 507 cagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagt 566
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 71 cagccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcccaat 12
Query: 567 tcttgaggtcc 577
|||||||||||
Sbjct: 11 tcttgaggtcc 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 404 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 345
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 344 caaaatacttacaaccatta 325
>gb|BG050807.1|BG050807 FM1_70_H06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 387
Score = 406 bits (205), Expect = e-111
Identities = 260/277 (93%), Gaps = 6/277 (2%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 276
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgc-gact 782
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 275 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcatact 216
Query: 783 ccatcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatca 842
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 215 ccatcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatca 156
Query: 843 tcttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgt 897
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 155 ttttcttctcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtga 96
Query: 898 gcactcggcggatcggatcgaggacggaaccctagct 934
||||||| |||||||||||||||||||||||||||||
Sbjct: 95 gcactcgccggatcggatcgaggacggaaccctagct 59
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 612 cacccacgtcgtcggaaccggcctt 636
|||||||||||||||||||||||||
Sbjct: 387 cacccacgtcgtcggaaccggcctt 363
>gb|CB928850.1|CB928850 ABA1_24_C07.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_C07_A012 5', mRNA sequence
Length = 606
Score = 402 bits (203), Expect = e-110
Identities = 257/276 (93%), Gaps = 5/276 (1%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 328 atgtacgtgcttgttgcagtactcgattacctnggataggatctnggagttgacgttagg 269
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 268 gagcgggatgccgtngtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 209
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcat 843
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 208 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgagggttatcat 149
Query: 844 cttcttctcgccctcggcggccatcgattcgatcgg-----agtggggaaaggtggtgtg 898
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 148 tttcttttcgccctcggccgccatcgattcgatcggagggaagtggggaaaggtggtgag 89
Query: 899 cactcggcggatcggatcgaggacggaaccctagct 934
|||||| |||||||||||||||||||||||||||||
Sbjct: 88 cactcgccggatcggatcgaggacggaaccctagct 53
Score = 396 bits (200), Expect = e-108
Identities = 238/251 (94%)
Strand = Plus / Minus
Query: 386 ggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttg 445
||||||||||||||| ||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 606 ggggtgaagtcattcntgatgttgaaggtcttgcggatctcctctggggttttgcccttg 547
Query: 446 atcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagttt 505
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 546 atcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagttt 487
Query: 506 gcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccag 565
|||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct: 486 gcagccaagatgaggtcgaagagcgtggcctggtcgaccttgacggagtcagcatcccaa 427
Query: 566 ttcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcgtcg 625
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 426 ttcttgaggtcctcaccggaggcggcggtgctgttggcggcggcggcacccacgtcgtcg 367
Query: 626 gaaccggcctt 636
|||||||||||
Sbjct: 366 gaaccggcctt 356
>gb|CF761118.1|CF761118 DSAF1_71_D03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_71_D03_A011 5', mRNA sequence
Length = 452
Score = 377 bits (190), Expect = e-102
Identities = 239/254 (94%), Gaps = 1/254 (0%)
Strand = Plus / Minus
Query: 384 caggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc-tggtgtcttgccc 442
||||||||||||||||||||||||||||||||||||| ||||| || ||| || ||||||
Sbjct: 452 caggggtgaagtcattcttgatgttgaaggtcttgcggatctcctcctggggttttgccc 393
Query: 443 ttgatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatag 502
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 392 ttgatcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatag 333
Query: 503 tttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcc 562
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 332 tttgcacccaagatgaggtcgaagagcgtggcctggtcgaccttgacgaagtcagcatcc 273
Query: 563 cagttcttgaggtcctcaccggaggcggcggtgctgttggcggaggcggcacccacgtcg 622
|| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 272 caattcttgaggtcctctccggaggcggcggtgctgttggcggcggcggcacccacgtcg 213
Query: 623 tcggaaccggcctt 636
||||||||| ||||
Sbjct: 212 tcggaaccgccctt 199
Score = 276 bits (139), Expect = 4e-072
Identities = 163/171 (95%)
Strand = Plus / Minus
Query: 664 atgtacgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttagg 723
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 171 atgtacgtgctcgttgcagtactcgattaccttggataggatcttggagttgccgttagg 112
Query: 724 aagagggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactc 783
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 111 gagcgggatgccgttgtcggcgcagtcatcttcgatcatgtggcggatggtctgcgactc 52
Query: 784 catcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgag 834
||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 51 catcgccaccgcctcctccacctcgaactcctcaccatctgagcttttgag 1
>gb|BE594685.1|BE594685 PI1_36_C08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 285
Score = 345 bits (174), Expect = 5e-093
Identities = 222/238 (93%), Gaps = 5/238 (2%)
Strand = Plus / Minus
Query: 702 ggatcttggagttgacgttaggaagagggatgccgttgtcggcgcagtcatcctcgatca 761
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 285 ggatcttggagttgacgttagggagcgggatgccgttgtcggcgcagtcatcttcgatca 226
Query: 762 tgtggcggatggtctgcgactccatcgccaccgcctcttccacctcgaactcctcgccat 821
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 225 tgtggcggatggtctgcgactccatcgccaccgcctcctccacctcgaactcctcaccat 166
Query: 822 cggagcttttgagggttatcatcttcttctcgccctcggcggccatcgattcgatcgg-- 879
| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 165 ctgagcttttgagggttatcattttcttttcgccctcggccgccatcgattcgatcggag 106
Query: 880 ---agtggggaaaggtggtgtgcactcggcggatcggatcgaggacggaaccctagct 934
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 105 ggaagtggggaaaggtggtgagcactcgccggatcggatcgaggacggaaccctagct 48
>gb|AI724616.1|AI724616 RHIZ1_6_F04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 482
Score = 315 bits (159), Expect = 4e-084
Identities = 183/191 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 132
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 131 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 72
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttg 506
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 71 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagtttg 12
Query: 507 cagccaagatg 517
|||||||||||
Sbjct: 11 cagccaagatg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 344 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 285
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 284 caaaatacttacaaccatta 265
>gb|BG053601.1|BG053601 RHIZ2_11_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 293 bits (148), Expect = 2e-077
Identities = 217/240 (90%)
Strand = Plus / Minus
Query: 339 actcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcat 398
|||| ||||||||||||||||||||||||||||| || |||||||| | |||||||| |
Sbjct: 240 actcaaaggcccactggttctccctgcggatctcatcctcctcctcttgagtgaagtcgt 181
Query: 399 tcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaa 458
||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||
Sbjct: 180 tcttgatgttgaatgtcttgcggatctcctccggagtcttgcccttgatcatgtcagcaa 121
Query: 459 cagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatga 518
| ||||| ||||||||||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct: 120 ctgtctggcaggtcaggtccagcaatcccttgatgttcagatagttggcagccaggatga 61
Query: 519 ggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcct 578
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 60 ggtcgaagagcgtagcctggtcgaccttgacgaactccgcgtcccagttcttgaggtcct 1
>gb|BE592623.1|BE592623 WS1_95_H09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 536
Score = 287 bits (145), Expect = 9e-076
Identities = 217/241 (90%)
Strand = Plus / Minus
Query: 339 actcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcat 398
|||| ||||||||||||||||||||||||||||| || |||||||| | |||||||| |
Sbjct: 356 actcaaaggcccactggttctccctgcggatctcatcctcctcctcttgagtgaagtcgt 297
Query: 399 tcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaa 458
||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||
Sbjct: 296 tcttgatgttgaatgtcttgcggatctcctccggagttttgcccttgatcatgtcagcaa 237
Query: 459 cagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatga 518
| ||||| ||||||||||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct: 236 ctgtctggcaggtcaggtccagcaatcccttgatgttcagatagttggcagccaggatga 177
Query: 519 ggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcct 578
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 176 ggtcgaagagcgtagcctggtcgaccttgacgaactccgcgtcccagttcttgaggtcct 117
Query: 579 c 579
|
Sbjct: 116 c 116
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatctt 708
||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 51 acgtgcttgttgcagtactcgatgaccttggagaggatctt 11
>gb|BE592748.1|BE592748 WS1_95_H09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 287 bits (145), Expect = 9e-076
Identities = 217/241 (90%)
Strand = Plus / Minus
Query: 339 actcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcat 398
|||| ||||||||||||||||||||||||||||| || |||||||| | |||||||| |
Sbjct: 356 actcaaaggcccactggttctccctgcggatctcatcctcctcctcttgagtgaagtcgt 297
Query: 399 tcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaa 458
||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||
Sbjct: 296 tcttgatgttgaatgtcttgcggatctcctccggagttttgcccttgatcatgtcagcaa 237
Query: 459 cagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatga 518
| ||||| ||||||||||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct: 236 ctgtctggcaggtcaggtccagcaatcccttgatgttcagatagttggcagccaggatga 177
Query: 519 ggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcct 578
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 176 ggtcgaagagcgtagcctggtcgaccttgacgaactccgcgtcccagttcttgaggtcct 117
Query: 579 c 579
|
Sbjct: 116 c 116
Score = 65.9 bits (33), Expect = 6e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatctt 708
||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 51 acgtgcttgttgcagtactcgatgaccttggagaggatctt 11
>gb|BE594755.1|BE594755 PI1_45_B03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 588
Score = 287 bits (145), Expect = 9e-076
Identities = 169/177 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 314
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 313 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 254
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatagt 503
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct: 253 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatagt 197
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 526 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 467
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 466 caaaatacttacaaccatta 447
>gb|BG605755.1|BG605755 RHIZ2_81_B03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 717
Score = 287 bits (145), Expect = 9e-076
Identities = 217/241 (90%)
Strand = Plus / Minus
Query: 339 actcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcat 398
|||| ||||||||||||||||||||||||||||| || |||||||| | |||||||| |
Sbjct: 490 actcaaaggcccactggttctccctgcggatctcatcctcctcctcttgagtgaagtcgt 431
Query: 399 tcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaa 458
||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||
Sbjct: 430 tcttgatgttgaatgtcttgcggatctcctccggagttttgcccttgatcatgtcagcaa 371
Query: 459 cagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatga 518
| ||||| ||||||||||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct: 370 ctgtctggcaggtcaggtccagcaatcccttgatgttcagatagttggcagccaggatga 311
Query: 519 ggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcct 578
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 310 ggtcgaagagcgtagcctggtcgaccttgacgaactccgcgtcccagttcttgaggtcct 251
Query: 579 c 579
|
Sbjct: 250 c 250
Score = 234 bits (118), Expect = 1e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||
Sbjct: 185 acgtgcttgttgcagtactcgatgaccttggagaggatcttcgagttgacgttggggagc 126
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 125 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatg 66
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| |||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct: 65 gccaccgcctcctccacctcgaactcctcgttgtcggagctcctcagggtaatcatcttc 6
Query: 848 tt 849
||
Sbjct: 5 tt 4
>gb|BI141325.1|BI141325 IP1_54_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 401
Score = 285 bits (144), Expect = 4e-075
Identities = 168/176 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 117
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 116 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 57
Query: 447 tcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcagatag 502
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 56 tcatgtcagcaacagtctggcaggtcaggtccagcagacccttgatgttgagatag 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 329 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 270
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 269 caaaatacttacaaccatta 250
>gb|CF760018.1|CF760018 DSAF1_54_E06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_54_E06_A011 5', mRNA sequence
Length = 407
Score = 280 bits (141), Expect = 2e-073
Identities = 216/241 (89%)
Strand = Plus / Minus
Query: 339 actcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcat 398
|||| |||||||||||||||||| |||||||||| || |||||||| | |||||||| |
Sbjct: 383 actcaaaggcccactggttctccgtgcggatctcatcctcctcctcttgagtgaagtcgt 324
Query: 399 tcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaa 458
||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||
Sbjct: 323 tcttgatgttgaatgtcttgcggatctcctccggagttttgcccttgatcatgtcagcaa 264
Query: 459 cagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatga 518
| ||||| ||||||||||| |||| |||||||||||||||||||| ||||||| |||||
Sbjct: 263 ctgtctggcaggtcaggtccagcaatcccttgatgttcagatagttggcagccaggatga 204
Query: 519 ggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcct 578
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 203 ggtcgaagagcgtagcctggtcgaccttgacgaactccgcgtcccagttcttgaggtcct 144
Query: 579 c 579
|
Sbjct: 143 c 143
Score = 107 bits (54), Expect = 2e-021
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||
Sbjct: 78 acgtgcttgttgcagtactcgatgaccttggagaggatcttcgagttgacgttggggagc 19
Query: 728 gggatgccgttgtcggcg 745
||||||||||||||||||
Sbjct: 18 gggatgccgttgtcggcg 1
>gb|AW282951.1|AW282951 LG1_304_B08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 368
Score = 248 bits (125), Expect = 8e-064
Identities = 143/149 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 90
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 89 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 30
Query: 447 tcatgtcagcaacagtctgacaggtcagg 475
||||||||||||||||||| |||||||||
Sbjct: 29 tcatgtcagcaacagtctggcaggtcagg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 302 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 243
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 242 caaaatacttacaaccatta 223
>gb|BG560747.1|BG560747 RHIZ2_64_C07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 412
Score = 236 bits (119), Expect = 3e-060
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 88
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
||||||||||||||||||||||||||| |||||| ||||| ||||| || ||||||||||
Sbjct: 87 gggtgaagtcattcttgatgttgaagggcttgcggatctcctctggggttttgcccttga 28
Query: 447 tcatgtcagcaacagtctgacaggtca 473
||||||||||||||||||| |||||||
Sbjct: 27 tcatgtcagcaacagtctggcaggtca 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 300 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 241
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 240 caaaatacttacaaccatta 221
>gb|CW202599.1|CW202599 104_628_11185177_148_37085_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185177, DNA
sequence
Length = 706
Score = 234 bits (118), Expect = 1e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||
Sbjct: 401 acgtgcttgttgcagtactcgatgaccttggagaggatcttcgagttgacgttggggagc 342
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatg 282
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| |||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct: 281 gccaccgcctcctccacctcgaactcctcgttgtcggagctcctcagggtaatcatcttc 222
Query: 848 tt 849
||
Sbjct: 221 tt 220
Score = 99.6 bits (50), Expect = 5e-019
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 531 gatgaggtcgaagagcgtagcctggtcgaccttgacgaactccgcgtcccagttcttgag 472
Query: 574 gtcctc 579
||||||
Sbjct: 471 gtcctc 466
>gb|BG053900.1|BG053900 RHIZ2_11_D05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 448
Score = 234 bits (118), Expect = 1e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||
Sbjct: 295 acgtgcttgttgcagtactcgatgaccttggagaggatcttcgagttgacgttggggagc 236
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatg 176
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| |||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct: 175 gccaccgcctcctccacctcgaactcctcgttgtcggagctcctcagggtgatcatcttc 116
Query: 848 tt 849
||
Sbjct: 115 tt 114
Score = 129 bits (65), Expect = 5e-028
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 491 atgttcagatagtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacg 550
|||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 448 atgttcagatagttggcagccaggatgaggtcgaagagcgtagcctggtcgaccttgacg 389
Query: 551 aagtccgcatcccagttcttgaggtcctc 579
|| ||||| ||||||||||||||||||||
Sbjct: 388 aactccgcgtcccagttcttgaggtcctc 360
>gb|BG649642.1|BG649642 RHIZ2_81_B03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 234 bits (118), Expect = 1e-059
Identities = 166/182 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || ||
Sbjct: 290 acgtgcttgttgcagtactcgatgaccttggagaggatcttcgagttgacgttggggagc 231
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 230 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatg 171
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| |||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct: 170 gccaccgcctcctccacctcgaactcctcgttgtcggagctcctcagggtaatcatcttc 111
Query: 848 tt 849
||
Sbjct: 110 tt 109
Score = 196 bits (99), Expect = 3e-048
Identities = 132/143 (92%)
Strand = Plus / Minus
Query: 437 ttgcccttgatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttc 496
||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||
Sbjct: 497 ttgcccttgatcatgtcagcaactgtctggcaggtcaggtccagcaatcccttgatgttc 438
Query: 497 agatagtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtcc 556
|||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 437 agatagttggcagccaggatgaggtcgaagagcgtagcctggtcgaccttgacgaactcc 378
Query: 557 gcatcccagttcttgaggtcctc 579
|| ||||||||||||||||||||
Sbjct: 377 gcgtcccagttcttgaggtcctc 355
>gb|CW337184.1|CW337184 104_836_11484012_116_36111_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484012, DNA
sequence
Length = 567
Score = 218 bits (110), Expect = 7e-055
Identities = 140/150 (93%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| || ||
Sbjct: 523 acgtgcttgttacagtactcgatgaccttggcgaggatcttcgagttgacgttggggagc 464
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 463 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatc 404
Query: 788 gccaccgcctcttccacctcgaactcctcg 817
||||||||||| ||||||||||||||||||
Sbjct: 403 gccaccgcctcctccacctcgaactcctcg 374
>gb|BZ421646.1|BZ421646 hz32f10.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone hz32f10 5', DNA sequence
Length = 734
Score = 216 bits (109), Expect = 3e-054
Identities = 139/149 (93%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| || ||
Sbjct: 86 acgtgcttgttacagtactcgatgaccttggcgaggatcttcgagttgacgttggggagc 145
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 146 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatc 205
Query: 788 gccaccgcctcttccacctcgaactcctc 816
||||||||||| |||||||||||||||||
Sbjct: 206 gccaccgcctcctccacctcgaactcctc 234
Score = 42.1 bits (21), Expect = 0.093
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 547 gacgaagtccgcatcccagttcttgaggtcctc 579
|||||| ||||| |||||| |||||||||||||
Sbjct: 1 gacgaactccgcgtcccagctcttgaggtcctc 33
>gb|BI141324.1|BI141324 IP1_54_D06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 353
Score = 216 bits (109), Expect = 3e-054
Identities = 124/129 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 70
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 69 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 10
Query: 447 tcatgtcag 455
|||||||||
Sbjct: 9 tcatgtcag 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 282 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 223
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 222 caaaatacttacaaccatta 203
>gb|BI141404.1|BI141404 IP1_55_E07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 349
Score = 208 bits (105), Expect = 7e-052
Identities = 120/125 (96%)
Strand = Plus / Minus
Query: 327 cagcacctccttactcgaaggcccactggttctccctgcggatctcctcttcctcctcag 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagcacctccttactcaaaggcccactggttctccctgcggatctcctcttcctcctcag 66
Query: 387 gggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttga 446
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct: 65 gggtgaagtcattcttgatgttgaaggtcttgcggatctcctctggggttttgcccttga 6
Query: 447 tcatg 451
|||||
Sbjct: 5 tcatg 1
Score = 111 bits (56), Expect = 1e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 190 taataaccgaccattgaccacataagtcttacgcgagacattcgcaagcaaagtgactcc 249
||||||||||||||||||||||| ||| |||| | | |||||| ||||||||||||||||
Sbjct: 278 taataaccgaccattgaccacatcagttttacccaacacattctcaagcaaagtgactcc 219
Query: 250 caaaatacttacaaccatta 269
||||||||||||||||||||
Sbjct: 218 caaaatacttacaaccatta 199
>gb|CL190592.1|CL190592 104_408_10906185_114_32483_033 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906185, DNA
sequence
Length = 652
Score = 202 bits (102), Expect = 4e-050
Identities = 132/142 (92%)
Strand = Plus / Plus
Query: 675 tgttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgc 734
|||| ||||||||||| ||||||| |||||||| ||||||||||| || || |||||||
Sbjct: 1 tgttacagtactcgatgaccttggcgaggatcttcgagttgacgttggggagcgggatgc 60
Query: 735 cgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatcgccaccg 794
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgttgtcggcgcagtcgtcctcgatcatgtggcggatggtctgcgactccatcgccaccg 120
Query: 795 cctcttccacctcgaactcctc 816
|||| |||||||||||||||||
Sbjct: 121 cctcctccacctcgaactcctc 142
>gb|BG048184.1|BG048184 OV1_28_F12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 595
Score = 194 bits (98), Expect = 1e-047
Identities = 188/218 (86%)
Strand = Plus / Minus
Query: 344 aaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattcttg 403
|||||||||||||||||||| | | ||||| || ||||| || |||||||||||||||
Sbjct: 378 aaggcccactggttctccctcctcacttcctcctcttcctctggtgtgaagtcattcttg 319
Query: 404 atgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaacagtc 463
|||||||| |||||||| ||||| ||||| ||||| |||||||||||||| || ||||||
Sbjct: 318 atgttgaatgtcttgcggatctcctctggagtcttccccttgatcatgtcggcgacagtc 259
Query: 464 tgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatgaggtcg 523
|| ||||||||||| ||||| |||||||||| ||| ||||||||||||| || |||||
Sbjct: 258 tggcaggtcaggtccagcagccccttgatgtccaggtagtttgcagccagaatcaggtca 199
Query: 524 aaaagcgtggcctggtcgaccttgacgaagtccgcatc 561
|| || ||||||||||| ||||||||||| || |||||
Sbjct: 198 aagagggtggcctggtcaaccttgacgaactcagcatc 161
>gb|BI141522.1|BI141522 IP1_53_C08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 269
Score = 194 bits (98), Expect = 1e-047
Identities = 143/158 (90%)
Strand = Plus / Minus
Query: 692 accttggataggatcttggagttgacgttaggaagagggatgccgttgtcggcgcagtca 751
|||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct: 265 accttggagaggatcttcgagttgacgttggggagcgggatgccgttgtcggcgcagtcg 206
Query: 752 tcctcgatcatgtggcggatggtctgcgactccatcgccaccgcctcttccacctcgaac 811
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 205 tcctcgatcatgtggcggatggtctgcgactccatggccaccgcctcctccacctcgaac 146
Query: 812 tcctcgccatcggagcttttgagggttatcatcttctt 849
|||||| |||||||| | ||||| |||||||||||
Sbjct: 145 tcctcgttgtcggagctcctcagggtaatcatcttctt 108
>gb|CD461837.1|CD461837 SA1_35_E09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_35_E09_A002 5', mRNA sequence
Length = 669
Score = 194 bits (98), Expect = 1e-047
Identities = 188/218 (86%)
Strand = Plus / Plus
Query: 344 aaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattcttg 403
|||||||||||||||||||| | | ||||| || ||||| || |||||||||||||||
Sbjct: 240 aaggcccactggttctccctcctcacttcctcctcttcctctggtgtgaagtcattcttg 299
Query: 404 atgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaacagtc 463
|||||||| |||||||| ||||| ||||| ||||| |||||||||||||| || ||||||
Sbjct: 300 atgttgaatgtcttgcggatctcctctggagtcttccccttgatcatgtcggcgacagtc 359
Query: 464 tgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatgaggtcg 523
|| ||||||||||| ||||| |||||||||| ||| ||||||||||||| || |||||
Sbjct: 360 tggcaggtcaggtccagcagccccttgatgtccaggtagtttgcagccagaatcaggtca 419
Query: 524 aaaagcgtggcctggtcgaccttgacgaagtccgcatc 561
|| || ||||||||||| ||||||||||| || |||||
Sbjct: 420 aagagggtggcctggtcaaccttgacgaactcagcatc 457
Score = 63.9 bits (32), Expect = 3e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 669 cgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaagag 728
||||||| |||||||| |||| ||||||| |||||| ||| ||||||||| || || |
Sbjct: 544 cgtgcttcctgcagtacacgatgaccttggcgaggatcctggcgttgacgttgggcagcg 603
Query: 729 ggatgccgttgtcggcgcag 748
||||| ||||||||||||||
Sbjct: 604 ggatgtcgttgtcggcgcag 623
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 265,966
Number of Sequences: 832831
Number of extensions: 265966
Number of successful extensions: 81249
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81042
Number of HSP's gapped (non-prelim): 148
length of query: 955
length of database: 491,359,669
effective HSP length: 20
effective length of query: 935
effective length of database: 474,703,049
effective search space: 443847350815
effective search space used: 443847350815
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)