BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.1
(950 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (L... 789 0.0
gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation... 424 e-117
gb|BG557772.1|BG557772 EM1_56_H06.g1_A002 Embryo 1 (EM1) So... 311 6e-083
gb|CW147347.1|CW147347 104_540_11139465_116_34996_037 Sorgh... 270 2e-070
gb|CW357581.1|CW357581 fsbb001f024e23k0 Sorghum methylation... 270 2e-070
gb|CW366490.1|CW366490 fsbb001f039i08f0 Sorghum methylation... 270 2e-070
gb|CW391703.1|CW391703 fsbb001f077p12k0 Sorghum methylation... 270 2e-070
gb|CW366491.1|CW366491 fsbb001f039i08k0 Sorghum methylation... 186 3e-045
gb|CW176126.1|CW176126 104_589_11158321_148_36583_015 Sorgh... 182 4e-044
gb|CL177218.1|CL177218 104_384_10893686_116_31916_134 Sorgh... 174 1e-041
gb|CW147348.1|CW147348 104_540_11139465_148_34992_037 Sorgh... 174 1e-041
gb|CW357580.1|CW357580 fsbb001f024e23f0 Sorghum methylation... 174 1e-041
gb|CW391693.1|CW391693 fsbb001f077p12f0 Sorghum methylation... 107 2e-021
gb|CL177219.1|CL177219 104_384_10893686_148_31915_134 Sorgh... 84 3e-014
gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum m... 50 4e-004
gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorgh... 50 4e-004
gb|CW146142.1|CW146142 104_539_11138833_148_34984_015 Sorgh... 50 4e-004
gb|CW150217.1|CW150217 104_549_11142910_116_36306_087 Sorgh... 50 4e-004
gb|CW150218.1|CW150218 104_549_11142910_148_36305_087 Sorgh... 50 4e-004
gb|CW188249.1|CW188249 104_608_11172930_116_36732_079 Sorgh... 50 4e-004
gb|CW188250.1|CW188250 104_608_11172930_148_36731_079 Sorgh... 50 4e-004
gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation... 50 4e-004
gb|CW390673.1|CW390673 fsbb001f076g23f0 Sorghum methylation... 50 4e-004
gb|CW417257.1|CW417257 fsbb001f120c20k0 Sorghum methylation... 50 4e-004
gb|CW315498.1|CW315498 104_806_11472396_116_35824_038 Sorgh... 46 0.006
gb|CL155643.1|CL155643 104_342_10782293_114_31473_005 Sorgh... 40 0.36
gb|CL155644.1|CL155644 104_342_10782293_116_31474_005 Sorgh... 40 0.36
gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorgh... 40 0.36
gb|CW120312.1|CW120312 104_497_11109256_116_34643_054 Sorgh... 40 0.36
gb|CW487415.1|CW487415 fsbb001f253e06k0 Sorghum methylation... 40 0.36
>gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 674
Score = 789 bits (398), Expect = 0.0
Identities = 443/458 (96%)
Strand = Plus / Minus
Query: 420 tgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctc 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 674 tgcgcaatgtagttagaagggctgatggtgcatcctccatggcagcacttgaagcagctc 615
Query: 480 ttgtggtacatagtgttattaacagtgaccctctcagttggatagactgtcttgctgcat 539
||||| ||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||
Sbjct: 614 ttgtgatacatagtgttgttgacagtaaccttctcaattggatagactgtcttgctgcat 555
Query: 540 ccaacacatttctctctggtgccagcaaaggcgcttgagactttagtagcattctcattc 599
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 554 ccaacacatttctctctggtgccagcaaaggcgcttgagactttaacagcattctcattc 495
Query: 600 ccaacgtttctttctggcttgacaaccttgggagttccttcgaagctcttgtccaagctc 659
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 494 ccaacgtttctttctggcttgacaacctttggagttccttcgaagctcttgtccaaactc 435
Query: 660 cctgtcctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaaggag 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccggtcctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaaggag 375
Query: 720 ttgtagttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgtgg 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgtagttggcaagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgtgg 315
Query: 780 tagatgcggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtg 839
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 314 tagatgcggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcggtg 255
Query: 840 cacttggtggtcgtcccctggaaggaggtcgccatggc 877
||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cacttggtggtcgtcccctggaaggaggtcgccatggc 217
>gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147b04, DNA
sequence
Length = 564
Score = 424 bits (214), Expect = e-117
Identities = 282/304 (92%), Gaps = 3/304 (0%)
Strand = Plus / Plus
Query: 202 tgaaatcgaaccacgccacagaaatacatagtgctctaggcaaatgcaagaggattcatt 261
||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||| |||
Sbjct: 4 tgaaatcgaaccatgccacagaaatatatagtgctctaagcaaatgcaagaagattaatt 63
Query: 262 attcatctgtggttgtgctcagtgatcaatactcttgttcatcctcctccagtgacccag 321
||||||||||| | |||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 64 attcatctgtgatagtgctcagtgattaatactcttcttcatcct---ccagtgacccag 120
Query: 322 cctgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatca 381
||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 121 cctgtgacgtcttctcgtgatcattctcaagctggctgaagtttcccttctctttgatca 180
Query: 382 gctggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggc 441
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 181 gctgaatgtggtggtgcttgcagtagagcttcccctcgtgcgcaatgtagttagaagggc 240
Query: 442 tgatggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaa 501
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 241 tgatggtgcatcctccatggcagcacttgaagcagctcttgtgatacatagtgttgttga 300
Query: 502 cagt 505
||||
Sbjct: 301 cagt 304
>gb|BG557772.1|BG557772 EM1_56_H06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 275
Score = 311 bits (157), Expect = 6e-083
Identities = 235/259 (90%), Gaps = 4/259 (1%)
Strand = Plus / Minus
Query: 148 acaagacaacaatatcattgttctctgaacacacatgacctccattggtaaaactgaaat 207
||||||| | ||| |||||||||||||||| ||| ||| |||||||||||||| ||||||
Sbjct: 259 acaagacgataatttcattgttctctgaacgcac-tgagctccattggtaaaattgaaat 201
Query: 208 cgaaccacgccacagaaatacatagtgctctaggcaaatgcaagaggattcattattcat 267
||||||| |||||||||||| ||||||||||| |||||||||||| |||| |||||||||
Sbjct: 200 cgaaccatgccacagaaatatatagtgctctaagcaaatgcaagaagattaattattcat 141
Query: 268 ctgtggttgtgctcagtgatcaatactcttgttcatcctcctccagtgacccagcctgtg 327
||||| | |||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 140 ctgtgatagtgctcagtgattaatactcttcttca---tcctccagtgacccagcctgtg 84
Query: 328 atgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagctgga 387
| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 83 acgtcttctcgtgatcattctcaagctggctgaagtttcccttctctttgatcagctgaa 24
Query: 388 tgtggtggtgcttgcagta 406
|||||||||||||||||||
Sbjct: 23 tgtggtggtgcttgcagta 5
>gb|CW147347.1|CW147347 104_540_11139465_116_34996_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139465, DNA
sequence
Length = 703
Score = 270 bits (136), Expect = 2e-070
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 142
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 82
Query: 854 cccctggaaggaggtcgccatggc 877
||||||||||||||||||||||||
Sbjct: 81 cccctggaaggaggtcgccatggc 58
Score = 174 bits (88), Expect = 1e-041
Identities = 97/100 (97%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 ccttcgaagctcttgtccaaactcccggtcctcttgaacagctggtcgaagtgaggcctg 383
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 cagtagagcactccctcgaaggagttgtagttggcaagct 343
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 527
>gb|CW357581.1|CW357581 fsbb001f024e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024e23, DNA
sequence
Length = 687
Score = 270 bits (136), Expect = 2e-070
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 511
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 451
Query: 854 cccctggaaggaggtcgccatggc 877
||||||||||||||||||||||||
Sbjct: 450 cccctggaaggaggtcgccatggc 427
>gb|CW366490.1|CW366490 fsbb001f039i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039i08, DNA
sequence
Length = 500
Score = 270 bits (136), Expect = 2e-070
Identities = 142/144 (98%)
Strand = Plus / Plus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 150
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 210
Query: 854 cccctggaaggaggtcgccatggc 877
||||||||||||||||||||||||
Sbjct: 211 cccctggaaggaggtcgccatggc 234
>gb|CW391703.1|CW391703 fsbb001f077p12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077p12, DNA
sequence
Length = 760
Score = 270 bits (136), Expect = 2e-070
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 298
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 238
Query: 854 cccctggaaggaggtcgccatggc 877
||||||||||||||||||||||||
Sbjct: 237 cccctggaaggaggtcgccatggc 214
Score = 174 bits (88), Expect = 1e-041
Identities = 97/100 (97%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 598 ccttcgaagctcttgtccaaactcccggtcctcttgaacagctggtcgaagtgaggcctg 539
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 538 cagtagagcactccctcgaaggagttgtagttggcaagct 499
Score = 71.9 bits (36), Expect = 1e-010
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 599 cccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 722 cccaacgtttctttctggcttgacaacctttggagttcct 683
>gb|CW366491.1|CW366491 fsbb001f039i08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039i08, DNA
sequence
Length = 554
Score = 186 bits (94), Expect = 3e-045
Identities = 100/102 (98%)
Strand = Plus / Minus
Query: 776 gtggtagatgcggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggc 835
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 554 gtggtagatgcggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggc 495
Query: 836 ggtgcacttggtggtcgtcccctggaaggaggtcgccatggc 877
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggtgcacttggtggtcgtcccctggaaggaggtcgccatggc 453
>gb|CW176126.1|CW176126 104_589_11158321_148_36583_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158321, DNA
sequence
Length = 498
Score = 182 bits (92), Expect = 4e-044
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 462
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtc 829
|||||||||||||||||| |||||||||||||||||
Sbjct: 463 ggcggtgagcttgtccacgaggtacaccgtcttgtc 498
Score = 174 bits (88), Expect = 1e-041
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 162 ccttcgaagctcttgtccaaactcccggtcctcttgaacagctggtcgaagtgaggcctg 221
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 222 cagtagagcactccctcgaaggagttgtagttggcaagct 261
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 32 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 77
>gb|CL177218.1|CL177218 104_384_10893686_116_31916_134 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893686, DNA
sequence
Length = 688
Score = 174 bits (88), Expect = 1e-041
Identities = 97/100 (97%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 222 ccttcgaagctcttgtccaaactcccggtcctcttgaacagctggtcgaagtgaggcctg 163
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 162 cagtagagcactccctcgaaggagttgtagttggcaagct 123
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 352 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 307
>gb|CW147348.1|CW147348 104_540_11139465_148_34992_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139465, DNA
sequence
Length = 750
Score = 174 bits (88), Expect = 1e-041
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 ccttcgaagctcttgtccaaactcccggtcctcttgaacagctggtcgaagtgaggcctg 554
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 555 cagtagagcactccctcgaaggagttgtagttggcaagct 594
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 365 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 410
>gb|CW357580.1|CW357580 fsbb001f024e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024e23, DNA
sequence
Length = 696
Score = 174 bits (88), Expect = 1e-041
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 424 ccttcgaagctcttgtccaaactcccggtcctcttgaacagctggtcgaagtgaggcctg 483
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 484 cagtagagcactccctcgaaggagttgtagttggcaagct 523
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 294 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 339
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 734 cttgagggtgcccttgcagtggtggcagcgga 765
||||||||||||||||||||||||||||||||
Sbjct: 665 cttgagggtgcccttgcagtggtggcagcgga 696
>gb|CW391693.1|CW391693 fsbb001f077p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077p12, DNA
sequence
Length = 677
Score = 107 bits (54), Expect = 2e-021
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 533 gctgcatccaacacatttctctctggtgccagcaaaggcgcttgagactttagtagcatt 592
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gctgcatccaacacatttctctctggtgccagcaaaggcgcttgagactttaacagcatt 60
Query: 593 ct 594
||
Sbjct: 61 ct 62
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 524 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 569
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 636 ccttcgaagctcttgtccaa 655
||||||||||||||||||||
Sbjct: 654 ccttcgaagctcttgtccaa 673
>gb|CL177219.1|CL177219 104_384_10893686_148_31915_134 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893686, DNA
sequence
Length = 646
Score = 83.8 bits (42), Expect = 3e-014
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 502 ctcattcccaacgtttctttctggcttgacaacctttggagttcct 547
Score = 63.9 bits (32), Expect = 3e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 555 ctggtgccagcaaaggcgcttgagactttagtagcattct 594
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctggtgccagcaaaggcgcttgagactttaacagcattct 40
>gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 631
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 72 agcacttgaagcagctcttgtggta 96
>gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 553
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 119 agcacttgaagcagctcttgtggta 143
>gb|CW146142.1|CW146142 104_539_11138833_148_34984_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 676
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 509 agcacttgaagcagctcttgtggta 533
>gb|CW150217.1|CW150217 104_549_11142910_116_36306_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142910, DNA
sequence
Length = 653
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 158 agcacttgaagcagctcttgtggta 134
>gb|CW150218.1|CW150218 104_549_11142910_148_36305_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142910, DNA
sequence
Length = 668
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 537 agcacttgaagcagctcttgtggta 561
>gb|CW188249.1|CW188249 104_608_11172930_116_36732_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172930, DNA
sequence
Length = 627
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 487 agcacttgaagcagctcttgtggta 511
>gb|CW188250.1|CW188250 104_608_11172930_148_36731_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172930, DNA
sequence
Length = 623
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 153 agcacttgaagcagctcttgtggta 129
>gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 671
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 289 agcacttgaagcagctcttgtggta 313
>gb|CW390673.1|CW390673 fsbb001f076g23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076g23, DNA
sequence
Length = 706
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 194 agcacttgaagcagctcttgtggta 170
>gb|CW417257.1|CW417257 fsbb001f120c20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120c20, DNA
sequence
Length = 777
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 515 agcacttgaagcagctcttgtggta 539
>gb|CW315498.1|CW315498 104_806_11472396_116_35824_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472396, DNA
sequence
Length = 647
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 741 gtgcccttgcagtggtggcagcggaagcagg 771
|||| ||||||||||||||| ||||||||||
Sbjct: 344 gtgctcttgcagtggtggcaccggaagcagg 374
>gb|CL155643.1|CL155643 104_342_10782293_114_31473_005 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782293, DNA
sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 868 tcgccatggccgccgtcgtctctc 891
||||||| ||||||||||||||||
Sbjct: 685 tcgccattgccgccgtcgtctctc 708
>gb|CL155644.1|CL155644 104_342_10782293_116_31474_005 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782293, DNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 868 tcgccatggccgccgtcgtctctc 891
||||||| ||||||||||||||||
Sbjct: 634 tcgccattgccgccgtcgtctctc 611
>gb|CW109957.1|CW109957 104_482_11103418_116_34510_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103418, DNA
sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttg 482
||||||||||||||||||||
Sbjct: 45 agcacttgaagcagctcttg 26
>gb|CW120312.1|CW120312 104_497_11109256_116_34643_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109256, DNA
sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 868 tcgccatggccgccgtcgtctctc 891
||||||| ||||||||||||||||
Sbjct: 124 tcgccattgccgccgtcgtctctc 147
>gb|CW487415.1|CW487415 fsbb001f253e06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253e06, DNA
sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 868 tcgccatggccgccgtcgtctctc 891
||||||| ||||||||||||||||
Sbjct: 114 tcgccattgccgccgtcgtctctc 137
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,618
Number of Sequences: 832831
Number of extensions: 269618
Number of successful extensions: 78751
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78680
Number of HSP's gapped (non-prelim): 68
length of query: 950
length of database: 491,359,669
effective HSP length: 20
effective length of query: 930
effective length of database: 474,703,049
effective search space: 441473835570
effective search space used: 441473835570
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)