BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805022.2.2
(1462 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF759145.1|CF759145 DSAF1_41_E12.b1_A011 Drought-stresse... 1088 0.0
gb|CN137293.1|CN137293 OX1_56_H06.b1_A002 Oxidatively-stres... 1088 0.0
gb|BI075771.1|BI075771 IP1_21_A06.b1_A002 Immature pannicle... 1078 0.0
gb|BI075477.1|BI075477 IP1_21_A06.g1_A002 Immature pannicle... 874 0.0
gb|CF760838.1|CF760838 DSAF1_67_D07.b1_A011 Drought-stresse... 874 0.0
gb|CD230012.1|CD230012 SS1_40_C09.b1_A012 Salt-stressed see... 870 0.0
gb|BM325077.1|BM325077 PIC1_39_E07.b1_A002 Pathogen-infecte... 831 0.0
gb|BE359218.1|BE359218 DG1_39_C11.g1_A002 Dark Grown 1 (DG1... 797 0.0
gb|BE593030.1|BE593030 WS1_93_E01.b1_A002 Water-stressed 1 ... 745 0.0
gb|U87982.1|SBU87982 Sorghum bicolor aldehyde dehydrogenase... 704 0.0
gb|CB928754.1|CB928754 ABA1_24_A05.b1_A012 Abscisic acid-tr... 696 0.0
gb|CF757915.1|CF757915 DSAF1_24_H10.g1_A011 Drought-stresse... 696 0.0
gb|CF757162.1|CF757162 DSAF1_14_E08.g1_A011 Drought-stresse... 688 0.0
gb|CF073955.1|CF073955 FE1_9_H12.b1_A002 Iron-deficient see... 684 0.0
gb|CF771685.1|CF771685 DSBF1_22_H03.g1_A010 Drought-stresse... 658 0.0
gb|CF758500.1|CF758500 DSAF1_32_F11.g1_A011 Drought-stresse... 636 e-180
gb|BG412563.1|BG412563 OV2_36_A01.g1_A002 Ovary 2 (OV2) Sor... 632 e-179
gb|CB928232.1|CB928232 ABA1_37_F11.b1_A012 Abscisic acid-tr... 573 e-161
gb|BE593352.1|BE593352 WS1_100_G02.g1_A002 Water-stressed 1... 567 e-159
gb|CN137379.1|CN137379 OX1_56_H06.g1_A002 Oxidatively-stres... 547 e-153
gb|BE592339.1|BE592339 WS1_93_E01.g1_A002 Water-stressed 1 ... 373 e-101
gb|CD230033.1|CD230033 SS1_40_C09.g1_A012 Salt-stressed see... 357 2e-096
gb|BM326340.1|BM326340 PIC1_55_H01.b1_A002 Pathogen-infecte... 287 1e-075
gb|CL164749.1|CL164749 104_359_10808120_114_31816_104 Sorgh... 276 5e-072
gb|CW299583.1|CW299583 104_782_11463196_148_35687_006 Sorgh... 276 5e-072
gb|BG412872.1|BG412872 OV2_36_A01.b1_A002 Ovary 2 (OV2) Sor... 274 2e-071
gb|CF757462.1|CF757462 DSAF1_18_B11.g1_A011 Drought-stresse... 272 9e-071
gb|CF761921.1|CF761921 DSAF1_83_D11.b1_A011 Drought-stresse... 272 9e-071
gb|CW180913.1|CW180913 104_595_11163209_116_36641_069 Sorgh... 270 3e-070
gb|BE359150.1|BE359150 DG1_39_C11.b1_A002 Dark Grown 1 (DG1... 240 3e-061
gb|BG159218.1|BG159218 RHIZ2_27_H02.b1_A003 Rhizome2 (RHIZ2... 240 3e-061
gb|CW180914.1|CW180914 104_595_11163209_148_36645_069 Sorgh... 238 1e-060
gb|BE593274.1|BE593274 WS1_99_G04.g1_A002 Water-stressed 1 ... 192 6e-047
gb|CW299582.1|CW299582 104_782_11463196_116_35690_006 Sorgh... 186 4e-045
gb|CW288778.1|CW288778 104_767_11412131_116_35543_042 Sorgh... 129 8e-028
gb|BG052659.1|BG052659 RHIZ2_27_H02.g1_A003 Rhizome2 (RHIZ2... 98 3e-018
gb|CW132884.1|CW132884 104_516_11116455_148_34802_058 Sorgh... 72 2e-010
gb|CL153153.1|CL153153 104_337_10780514_116_31368_146 Sorgh... 42 0.14
gb|CW496656.1|CW496656 fsbb001f289a05f0 Sorghum methylation... 42 0.14
>gb|CF759145.1|CF759145 DSAF1_41_E12.b1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_41_E12_A011 5', mRNA sequence
Length = 637
Score = 1088 bits (549), Expect = 0.0
Identities = 615/637 (96%)
Strand = Plus / Plus
Query: 486 cagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaac 545
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cagatatccagctagctgtacgttctgtcttgtttgctgctgttggtacagcaggacaac 60
Query: 546 gctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttccttgatc 605
||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct: 61 gctgcactacatgccgtaggctgattcttcatgaaagcatatatcaaactttccttgatc 120
Query: 606 agcttgttgaggtatacaaacaagtccgaattggggatccgttggagaaaggcaccttac 665
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 121 aacttgttgaggtatacaaacaagttcgaattggggatccgttggagaagggcaccttac 180
Query: 666 tgggaccactgcacactcctgcttcaaaagagaactttttgaaaggcattcagactatca 725
||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |
Sbjct: 181 tgggaccactgcacactcctgcttcaaaagagaactttttgaaaggcgttcaaaccatta 240
Query: 726 aatctcagggagggaaaatcctttttggaggatctgccattgaatcagaaggaaactttg 785
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 241 agtctcagggagggaaaatcctttttggaggatctgccattgaatcagaaggaaacttcg 300
Query: 786 tgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaagaagaactctttg 845
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 tgcaaccaacgattgtggaaattacaccttctgcagcagttgtgaaagaagaactctttg 360
Query: 846 gtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataact 905
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 361 gtcctgtcctttatgttatgaaatttcagagcttgaaggaagcaattgaaatcaataact 420
Query: 906 ctgttcctcaaggattgagcagttctatatttacaaagaggccagatattatttttaagt 965
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 421 ctgttcctcaaggattgagcagttctatatttacaaagaggccagaaattatttttaagt 480
Query: 966 ggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtg 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 481 ggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaacggtg 540
Query: 1026 ctgaaattggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcaggga 1085
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgaaatcggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcaggga 600
Query: 1086 gtgattcctggaagcagtacatgaggagggcgacttg 1122
|||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgattcctggaagcagtacatgaggagggcgacttg 637
>gb|CN137293.1|CN137293 OX1_56_H06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_H06_A002 3', mRNA sequence
Length = 825
Score = 1088 bits (549), Expect = 0.0
Identities = 603/621 (97%)
Strand = Plus / Plus
Query: 574 tcatgagaacatatatcaaaccttccttgatcagcttgttgaggtatacaaacaagtccg 633
|||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tcatgaaagcatatatcaaactttccttgatcaacttgttgaggtatacaaacaagtccg 60
Query: 634 aattggggatccgttggagaaaggcaccttactgggaccactgcacactcctgcttcaaa 693
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattggggatccgttggagaagggcaccttactgggaccactgcacactcctgcttcaaa 120
Query: 694 agagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttgg 753
||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||
Sbjct: 121 agagaactttttgaaaggcgttcaaaccattaaatctcagggagggaaaatcctttttgg 180
Query: 754 aggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacacc 813
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 aggatctgccattgaatcagaaggaaacttcgtgcaaccaacaattgtggaaattacacc 240
Query: 814 ttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttca 873
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctgcagcagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttca 300
Query: 874 gaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctat 933
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagcttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctat 360
Query: 934 atttacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtgg 993
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atttacaaagaggccagaaattatttttaagtggctcgggccccatggtagtgattgtgg 420
Query: 994 tatagtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggaga 1053
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 421 tatagtgaatgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggaga 480
Query: 1054 aaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggag 1113
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaggcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggag 540
Query: 1114 ggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 541 ggcgacttgtacaatcaactatggaagcgagctacctctagcccagggaatcaattttgg 600
Query: 1174 ttaatcctgcagaaatgttgc 1194
|||||||||||| ||||||||
Sbjct: 601 ttaatcctgcaggaatgttgc 621
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 624 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 683
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 684 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 738
>gb|BI075771.1|BI075771 IP1_21_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 638
Score = 1078 bits (544), Expect = 0.0
Identities = 611/632 (96%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 438 gccttcttgaacttagcggaaacaatgccatcattgttatggatgatgcagatatccagc 497
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8 gccttcttgaacttagcggaaacaatgccatcattgttatggatgacgcagatatccagc 67
Query: 498 tagctgtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcactacat 557
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 68 tagctgtgcgttctgtcttgtttgctgctgtcggtacagcaggacaacgctgcactacat 127
Query: 558 gtcgtaggctgattcttcatgagaacatatatcaaaccttccttgatcagcttgttgagg 617
| |||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||
Sbjct: 128 gccgtaggctgattcttcatgaaagcatatatcaaactttccttgatcaacttgttgagg 187
Query: 618 tatacaaacaagtccgaattggggatccgttggagaaaggcaccttactgggaccactgc 677
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 188 tatacaaacaagtccgaattggggatccgttggagaagggcaccttactgggaccactgc 247
Query: 678 acactcctgcttcaaaagagaactttttgaaaggcattcagactatcaaatctcagggag 737
||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||
Sbjct: 248 acactcctgcttcaaaagagaactttttgaaaggcgttcaaaccattaaatctcagggag 307
Query: 738 ggaaaatcctttttggaggatctgccattgaatcagaaggaaactttgtgcaaccaacaa 797
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 308 ggaaaatcctttttggaggatctgccattgaatcagaaggaaacttcgtgcaaccaacaa 367
Query: 798 ttgtggaaattacaccttctgcaccagttgtgaaagaagaactctttggtcctgtccttt 857
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgtggaaattacaccttctgcagcagttgtgaaagaagaactctttggtcctgtccttt 427
Query: 858 atgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaag 917
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgttatgaaatttcagagcttgaaggaagcaattgaaatcaataactctgttcctcaag 487
Query: 918 gattgagcagttctatatttacaaagaggccagatattatttttaagtggctcgggcccc 977
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 gattgagcagttctatatttacaaagaggccagaaattatttttaagtggctcgggcccc 547
Query: 978 atggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaattggtg 1037
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 548 atggtagtgattgtggtatagtgaatgtgaacatacctactaacggtgctgaaatcggtg 607
Query: 1038 gagcatttggtggagaaaaagcaactggtggt 1069
||||||||||||||| ||||||||||||||||
Sbjct: 608 gagcatttggtggag-aaaagcaactggtggt 638
>gb|BI075477.1|BI075477 IP1_21_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 704
Score = 874 bits (441), Expect = 0.0
Identities = 482/496 (97%)
Strand = Plus / Plus
Query: 699 actttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttttggaggat 758
||||| |||||||| |||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 1 actttntgaaaggcgttcaaaccattaaatctcagggagggaaaatcctttttggaggat 60
Query: 759 ctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttctg 818
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgccattgaatcagaaggaaacttcgtgcaaccaacaattgtggaaattacaccttctg 120
Query: 819 caccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagacct 878
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 cagcagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagagct 180
Query: 879 tgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatattta 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatattta 240
Query: 939 caaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatag 998
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaagaggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtatag 300
Query: 999 tgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaag 1058
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 301 tgaatgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaagg 360
Query: 1059 caactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcga 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcga 420
Query: 1119 cttgtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggttaat 1178
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttgtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggttaat 480
Query: 1179 cctgcagaaatgttgc 1194
||||||| ||||||||
Sbjct: 481 cctgcaggaatgttgc 496
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 499 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 558
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 559 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 613
>gb|CF760838.1|CF760838 DSAF1_67_D07.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_67_D07_A011 5', mRNA sequence
Length = 537
Score = 874 bits (441), Expect = 0.0
Identities = 513/537 (95%)
Strand = Plus / Plus
Query: 54 atggatccattataccatctgaacgaccaaaccatatgatgatggaggtgtggaatcccc 113
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggatcgattataccatctgaacgaccaaaccatatgatgatggaggtgtggaatcccc 60
Query: 114 ttggagttgtgggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatg 173
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 ttggagttgtgggtgttataacggcatttaattttccttgtgctgtgcttggttggaatg 120
Query: 174 cttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccac 233
||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||
Sbjct: 121 cttgcattgctttggtctgtggaaactgcgttgtctggaaaggtgccccaacgactccac 180
Query: 234 tgatcactattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccag 293
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 tgatcactattgcaatgactaaaatagtggctagcgtattggagaagaacaacttgccag 240
Query: 294 gcgcaatttttacatctttttgtgggggcactgaaattggtcaagcaattgcccttgaca 353
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 241 gcgcaattttcacatccttttgtggtggcactgaaattggtcaagcaattgccgttgaca 300
Query: 354 ttaggatacctttggtttcattcactggaagtacaagggctggtctaatggttcagcaac 413
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 301 ctaggatacctttggtttcattcactggaagtacaagggctggtctgatggttcaacaac 360
Query: 414 aagttagtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattg 473
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagttaatgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattg 420
Query: 474 ttatggatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggta 533
|||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct: 421 ttatggatgacgcagatatccagctagctgtacgttctgtcttgtttgctgctgttggta 480
Query: 534 cagcaggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatatatc 590
||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct: 481 cagcaggacaacgctgcactacatgccgtaggctgattcttcatgaaagcatatatc 537
>gb|CD230012.1|CD230012 SS1_40_C09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_40_C09_A012 3', mRNA sequence
Length = 716
Score = 870 bits (439), Expect = 0.0
Identities = 490/506 (96%), Gaps = 2/506 (0%)
Strand = Plus / Plus
Query: 691 aaaagagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatcctttt 750
|||||||||||||||||||||| |||| || || || |||||||||||||||||||||||
Sbjct: 1 aaaagagaactttttgaaaggcgttcaaaccattaagtctcagggagggaaaatcctttt 60
Query: 751 tggaggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattac 810
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 61 tggaggatctgccattgaatcagaaggaaacttcgtgcaaccaacgattgtggaaattac 120
Query: 811 accttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatt 870
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accttctgcagcagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatt 180
Query: 871 tcagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttc 930
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcagagcttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttc 240
Query: 931 tatatttacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattg 990
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatatttacaaagaggccagaaattatttttaagtggctcgggccccatggtagtgattg 300
Query: 991 tggtatagtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtgg 1050
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 301 tggtatagtgaatgtgaacatacctactaacggtgctgaaatcggtggagc--ttggtgg 358
Query: 1051 agaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgag 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgag 418
Query: 1111 gagggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaattt 1170
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 419 gagggcgacttgtacaatcaactatggaagcgagctacctctagcccagggaatcaattt 478
Query: 1171 tggttaatcctgcagaaatgttgcgc 1196
||||||||||||||| ||||||||||
Sbjct: 479 tggttaatcctgcaggaatgttgcgc 504
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 505 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 564
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 565 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 619
>gb|BM325077.1|BM325077 PIC1_39_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 527
Score = 831 bits (419), Expect = 0.0
Identities = 494/519 (95%)
Strand = Plus / Plus
Query: 179 attgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatc 238
|||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 9 attgctttggtctgtggaaactgtgttgtctggaaaggtgccccaacgactccactgatc 68
Query: 239 actattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgca 298
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 69 actattgcaatgactaaaatagtggctagcgtattggagaagaacaatttgccaggcgca 128
Query: 299 atttttacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattagg 358
||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 129 attttcacatccttttgtggtggcactgaaattggtcaagcaattgccgttgacactagg 188
Query: 359 atacctttggtttcattcactggaagtacaagggctggtctaatggttcagcaacaagtt 418
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 189 atacctttggtttcattcactggaagtacaagggctggtctgatggttcaacaacaagtt 248
Query: 419 agtgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatg 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aatgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatg 308
Query: 479 gatgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagca 538
||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 309 gatgacgcagatatccagctagctgtgcgttctgtcttgtttgctgctgtcggtacagca 368
Query: 539 ggacaacgctgcactacatgtcgtaggctgattcttcatgagaacatatatcaaaccttc 598
|||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||
Sbjct: 369 ggacaacgctgcactacatgccgtaggctgattcttcatgaaagcatatatcaaactttc 428
Query: 599 cttgatcagcttgttgaggtatacaaacaagtccgaattggggatccgttggagaaaggc 658
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 cttgatcaacttgttgaggtatacaaacaagtccgaattggggatccgttggagaagggc 488
Query: 659 accttactgggaccactgcacactcctgcttcaaaagag 697
|||||||||||||||||||||||||||||||||||||||
Sbjct: 489 accttactgggaccactgcacactcctgcttcaaaagag 527
>gb|BE359218.1|BE359218 DG1_39_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 797 bits (402), Expect = 0.0
Identities = 429/438 (97%)
Strand = Plus / Plus
Query: 757 atctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaattacaccttc 816
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 atctgccattgaatcagaaggaaacttcgtgcaaccaacaattgtggaaattacaccttc 60
Query: 817 tgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagac 876
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcagcagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagag 120
Query: 877 cttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatt 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatt 180
Query: 937 tacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtat 996
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaaagaggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtat 240
Query: 997 agtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaa 1056
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 241 agtgaatgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaa 300
Query: 1057 agcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggc 1116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggc 360
Query: 1117 gacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggtta 1176
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gacttgtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggtta 420
Query: 1177 atcctgcagaaatgttgc 1194
||||||||| ||||||||
Sbjct: 421 atcctgcaggaatgttgc 438
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 441 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 500
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 501 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 555
>gb|BE593030.1|BE593030 WS1_93_E01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 745 bits (376), Expect = 0.0
Identities = 431/448 (96%), Gaps = 1/448 (0%)
Strand = Plus / Plus
Query: 626 caagtccgaattggggatccgttggagaaaggcaccttactgggaccactgcacactcct 685
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 caagtccgaataggggatccgttggagaagggcaccttactgggaccactgcacactcct 60
Query: 686 gcttcaaaagagaactttttgaaaggcattcagactatcaaatctcagggagggaaaatc 745
||||||||||||||||||||||||||| |||| || || |||||||||| ||||||||||
Sbjct: 61 gcttcaaaagagaactttttgaaaggcgttcaaaccattaaatctcagg-agggaaaatc 119
Query: 746 ctttttggaggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaa 805
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 120 ctttttggaggatctgccattgaatcacaaggaaacttcatgcaaccaacaattgtggaa 179
Query: 806 attacaccttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatg 865
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 180 attacaccttctgcagcagttgtgaaagaagaactctttggtgctgtcctttatgttatg 239
Query: 866 aaatttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagc 925
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaatttcagagcttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagc 299
Query: 926 agttctatatttacaaagaggccagatattatttttaagtggctcgggccccatggtagt 985
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 300 agttctatatttacaaagaggccagaaattatttttaagtggctcgggccccatggtagt 359
Query: 986 gattgtggtatagtgaatgtgaacatacctactaatggtgctgaaattggtggagcattt 1045
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 360 gattgtggtatagtgaatgtgaacatacctactaacggtgctgaaatcggtggagcattt 419
Query: 1046 ggtggagaaaaagcaactggtggtggac 1073
||||||||||| ||||||||||||||||
Sbjct: 420 ggtggagaaaaggcaactggtggtggac 447
>gb|U87982.1|SBU87982 Sorghum bicolor aldehyde dehydrogenase (Dha1) mRNA, partial cds
Length = 546
Score = 704 bits (355), Expect = 0.0
Identities = 379/387 (97%)
Strand = Plus / Plus
Query: 808 tacaccttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaa 867
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacaccttctgcagcagttgtgaaagaagaactctttggtcctgtcctttatgttatgaa 60
Query: 868 atttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcag 927
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttcagagcttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcag 120
Query: 928 ttctatatttacaaagaggccagatattatttttaagtggctcgggccccatggtagtga 987
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctatatttacaaagaggccagaaattatttttaagtggctcgggccccatggtagtga 180
Query: 988 ttgtggtatagtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttgg 1047
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 181 ttgtggtatagtgaatgtgaacatacctactaacggtgctgaaatcggtggagcatttgg 240
Query: 1048 tggagaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacat 1107
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggagaaaaggcaactggtggtggacgagaagcagggagtgattcctggaagcagtacat 300
Query: 1108 gaggagggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaa 1167
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 gaggagggcgacttgtacaatcaactatggaagcgagctacctctagcccagggaatcaa 360
Query: 1168 ttttggttaatcctgcagaaatgttgc 1194
|||||||||||||||||| ||||||||
Sbjct: 361 ttttggttaatcctgcaggaatgttgc 387
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 390 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 449
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 450 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 504
>gb|CB928754.1|CB928754 ABA1_24_A05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_A05_A012 3', mRNA sequence
Length = 592
Score = 696 bits (351), Expect = 0.0
Identities = 369/375 (98%)
Strand = Plus / Plus
Query: 822 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttga 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagagcttga 61
Query: 882 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 121
Query: 942 agaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 1001
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agaggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 181
Query: 1002 atgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaa 1061
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 182 atgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaaagcaa 241
Query: 1062 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 301
Query: 1122 gtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcct 1181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggttaatcct 361
Query: 1182 gcagaaatgttgcgc 1196
|||| ||||||||||
Sbjct: 362 gcaggaatgttgcgc 376
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 377 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 436
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 437 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 491
>gb|CF757915.1|CF757915 DSAF1_24_H10.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_24_H10_A011 3', mRNA sequence
Length = 596
Score = 696 bits (351), Expect = 0.0
Identities = 369/375 (98%)
Strand = Plus / Plus
Query: 822 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttga 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagagcttga 64
Query: 882 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 124
Query: 942 agaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 1001
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agaggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 184
Query: 1002 atgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaa 1061
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 185 atgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaaagcaa 244
Query: 1062 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 304
Query: 1122 gtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcct 1181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggttaatcct 364
Query: 1182 gcagaaatgttgcgc 1196
|||| ||||||||||
Sbjct: 365 gcaggaatgttgcgc 379
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 380 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 439
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 440 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 494
>gb|CF757162.1|CF757162 DSAF1_14_E08.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_14_E08_A011 3', mRNA sequence
Length = 595
Score = 688 bits (347), Expect = 0.0
Identities = 368/375 (98%)
Strand = Plus / Plus
Query: 822 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttga 881
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 5 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgcaatttcagagcttga 64
Query: 882 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 124
Query: 942 agaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 1001
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agaggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 184
Query: 1002 atgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaa 1061
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 185 atgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaaagcaa 244
Query: 1062 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 304
Query: 1122 gtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcct 1181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggttaatcct 364
Query: 1182 gcagaaatgttgcgc 1196
|||| ||||||||||
Sbjct: 365 gcaggaatgttgcgc 379
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 380 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 439
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 440 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 494
>gb|CF073955.1|CF073955 FE1_9_H12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone
FE1_9_H12_A002 3', mRNA sequence
Length = 623
Score = 684 bits (345), Expect = 0.0
Identities = 366/373 (98%)
Strand = Plus / Plus
Query: 822 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagaccttga 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3 cagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagagcttga 62
Query: 882 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaa 122
Query: 942 agaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 1001
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agaggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtatagtga 182
Query: 1002 atgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaa 1061
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 183 atgtgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaaggcaa 242
Query: 1062 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgactt 302
Query: 1122 gtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcct 1181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggttaatcct 362
Query: 1182 gcagaaatgttgc 1194
|||| ||||||||
Sbjct: 363 gcaggaatgttgc 375
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 378 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 437
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 438 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 492
>gb|CF771685.1|CF771685 DSBF1_22_H03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_22_H03_A010 3', mRNA sequence
Length = 565
Score = 658 bits (332), Expect = 0.0
Identities = 350/356 (98%)
Strand = Plus / Plus
Query: 841 ctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaa 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctttggtcctgtcctttatgttatgaaatttcagagcttgaaggaagcaattgaaatcaa 60
Query: 901 taactctgttcctcaaggattgagcagttctatatttacaaagaggccagatattatttt 960
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 taactctgttcctcaaggattgagcagttctatatttacaaagaggccagaaattatttt 120
Query: 961 taagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaa 180
Query: 1021 tggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtggacgagaagc 1080
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cggtgctgaaatcggtggagcatttggtggagaaaaagcaactggtggtggacgagaagc 240
Query: 1081 agggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaactatgggag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 agggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaactatggaag 300
Query: 1141 cgagctacctctagcccagggaatcaattttggttaatcctgcagaaatgttgcgc 1196
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 cgagctacctctagcccagggaatcaattttggttaatcctgcaggaatgttgcgc 356
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 357 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 416
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 417 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 471
>gb|CF758500.1|CF758500 DSAF1_32_F11.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_32_F11_A011 3', mRNA sequence
Length = 552
Score = 636 bits (321), Expect = e-180
Identities = 339/345 (98%)
Strand = Plus / Plus
Query: 852 tcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttc 911
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctttatgttatgaaatttcagagcttgaaggaagcaattgaaatcaataactctgttc 60
Query: 912 ctcaaggattgagcagttctatatttacaaagaggccagatattatttttaagtggctcg 971
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 ctcaaggattgagcagttctatatttacaaagaggccagaaattatttttaagtggctcg 120
Query: 972 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaa 1031
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaacggtgctgaaa 180
Query: 1032 ttggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgatt 1091
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgatt 240
Query: 1092 cctggaagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagctacctc 1151
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 cctggaagcagtacatgaggagggcgacttgtacaatcaactatggaagcgagctacctc 300
Query: 1152 tagcccagggaatcaattttggttaatcctgcagaaatgttgcgc 1196
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 tagcccagggaatcaattttggttaatcctgcaggaatgttgcgc 345
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 346 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 405
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 406 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 460
>gb|BG412563.1|BG412563 OV2_36_A01.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 515
Score = 632 bits (319), Expect = e-179
Identities = 340/347 (97%)
Strand = Plus / Plus
Query: 848 cctgtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactct 907
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 cctgtcctttatgttatgaaatttcagagcttgaaggaagcaattgaaatcaataactct 60
Query: 908 gttcctcaaggattgagcagttctatatttacaaagaggccagatattatttttaagtgg 967
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 gttcctcaaggattgagcagttctatatttacaaagaggccagaaattatttttaagtgg 120
Query: 968 ctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgct 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 ctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaacggtgct 180
Query: 1028 gaaattggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagt 1087
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 gaaatcggtggagcatttggtggagaaaaggcaactggtggtggacgagaagcagggagt 240
Query: 1088 gattcctggaagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagcta 1147
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 gattcctggaagcagtacatgaggagggcgacttgtacaatcaactatggaagcgagcta 300
Query: 1148 cctctagcccagggaatcaattttggttaatcctgcagaaatgttgc 1194
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 301 cctctagcccagggaatcaattttggttaatcctgcaggaatgttgc 347
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 350 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 409
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 410 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 464
>gb|CB928232.1|CB928232 ABA1_37_F11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_37_F11_A012 3', mRNA sequence
Length = 536
Score = 573 bits (289), Expect = e-161
Identities = 328/341 (96%)
Strand = Plus / Plus
Query: 856 ttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttcctca 915
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatgttatgaaatttcagagcttgaaggaagcaattgaaatcaataactctgttcctca 60
Query: 916 aggattgagcagttctatatttacaaagaggccagatattatttttaagtggctcgggcc 975
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 aggattgagcagttctatatttacaaagaggccagaaattatttttaagtggctcgggcc 120
Query: 976 ccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaattgg 1035
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 121 ccatggtagtgattgtggtatagtgaatgtgaacatacttactaacggtgctgaaatcgg 180
Query: 1036 tggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgattcctg 1095
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 181 tggagcatttggtggagaaaaagctactggtggtggacgagaaccagggagtgattcctg 240
Query: 1096 gaagcagtacatgaggagggcgacttgtacaatcaactatgggagcgagctacctctagc 1155
||||||||||||||||||||||||||||||||||| ||| || |||||| ||| ||||||
Sbjct: 241 gaagcagtacatgaggagggcgacttgtacaatcacctagggaagcgagttacttctagc 300
Query: 1156 ccagggaatcaattttggttaatcctgcagaaatgttgcgc 1196
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 ccagggaatcaattttggttaatcctgcaggaatgttgcgc 341
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
|||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 342 tgcaaccgcatttgagatctttgcatagactcgagcagtgtttatgggcgtcagtcgtca 401
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
|||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 402 aacttaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 456
>gb|BE593352.1|BE593352 WS1_100_G02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 567 bits (286), Expect = e-159
Identities = 304/310 (98%)
Strand = Plus / Plus
Query: 885 aagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaaga 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatttacaaaga 65
Query: 945 ggccagatattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatg 1004
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ggccagaaattatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatg 125
Query: 1005 tgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactg 1064
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 126 tgaacatacctactaacggtgctgaaatcggtggagcatttggtggagaaaaggcaactg 185
Query: 1065 gtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgta 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgta 245
Query: 1125 caatcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcctgca 1184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 caatcaactatggaagcgagctacctctagcccagggaatcaattttggttaatcctgca 305
Query: 1185 gaaatgttgc 1194
| ||||||||
Sbjct: 306 ggaatgttgc 315
Score = 58.0 bits (29), Expect = 2e-006
Identities = 97/117 (82%), Gaps = 7/117 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 318 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 377
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtg 1361
||| |||| |||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct: 378 aacataaattgcaggggcat-gtgtac----ataaaataagatgtttgttgatcgtg 429
>gb|CN137379.1|CN137379 OX1_56_H06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_H06_A002 5', mRNA sequence
Length = 748
Score = 547 bits (276), Expect = e-153
Identities = 312/324 (96%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 484
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 544
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 545 gggtgttataacggcatttaattttccttgcgctgtgcttggttggaatgcttgcattgc 604
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct: 605 tttggtctgtggaaactgtgttgtctggaaaggtgccccaacgactccactgatcactat 664
Query: 244 tgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgcaatttt 303
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 665 tgcaatgactaaaatagtggctagcgtattggagaagaacaatttgccaggcgcaatttt 724
Query: 304 tacatctttttgtgggggcactga 327
||||| |||||||| ||||||||
Sbjct: 725 cacatccttttgtggtggcactga 748
>gb|BE592339.1|BE592339 WS1_93_E01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 220
Score = 373 bits (188), Expect = e-101
Identities = 209/216 (96%)
Strand = Plus / Plus
Query: 791 ccaacaattgtggaaattacaccttctgcaccagttgtgaaagaagaactctttggtcct 850
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ccaacaattgtggaaattacaccttctgcagcagttgtgaaagaagaactctttggtcct 60
Query: 851 gtcctttatgttatgaaatttcagaccttgaaggaagcaattgaaatcaataactctgtt 910
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcctttatgttatgaaatttcagagcttgaaggaagcaattgaaatcaataactctgtt 120
Query: 911 cctcaaggattgagcagttctatatttacaaagaggccagatattatttttaagtggctc 970
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct: 121 cctcaaggattgagcagttctatattcacaaagaggccagtaattatttttaagtggatc 180
Query: 971 gggccccatggtagtgattgtggtatagtgaatgtg 1006
||||||||||||||||| ||||||||||||||||||
Sbjct: 181 gggccccatggtagtgagtgtggtatagtgaatgtg 216
>gb|CD230033.1|CD230033 SS1_40_C09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_C09_A012 5', mRNA sequence
Length = 652
Score = 357 bits (180), Expect = 2e-096
Identities = 186/188 (98%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 465 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatcgat 524
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 584
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 585 gggtgttataacggcatttaattttccttgtgctgtgcttggttggaatgcttgcattgc 644
Query: 184 tttggtct 191
||||||||
Sbjct: 645 tttggtct 652
>gb|BM326340.1|BM326340 PIC1_55_H01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 209
Score = 287 bits (145), Expect = 1e-075
Identities = 187/201 (93%)
Strand = Plus / Plus
Query: 179 attgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatc 238
|||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 9 attgctttggtctgaggaaactgtgttgtctggaaaggtgccccaacgactccgctgatc 68
Query: 239 actattgcaatgacaaaaatagtggctagtgtattggagaagaacaacttgccaggcgca 298
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 69 actattgcaatgactaaaatagtggctagcgtattggagaagaacaatttgccaggcgca 128
Query: 299 atttttacatctttttgtgggggcactgaaattggtcaagcaattgcccttgacattagg 358
||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 129 attttcacatccttttgtggtggcactgaaattggtcaagcaattgccgttgacactagg 188
Query: 359 atacctttggtttcattcact 379
|||||||||||||||||||||
Sbjct: 189 atacctttggtttcattcact 209
>gb|CL164749.1|CL164749 104_359_10808120_114_31816_104 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808120, DNA
sequence
Length = 694
Score = 276 bits (139), Expect = 5e-072
Identities = 148/151 (98%)
Strand = Plus / Plus
Query: 972 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaa 1031
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaacggtgctgaaa 378
Query: 1032 ttggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgatt 1091
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 379 tcggtggagcatttggtggagaaaaggcaactggtggtggacgagaagcagggagtgatt 438
Query: 1092 cctggaagcagtacatgaggagggcgacttg 1122
|||||||||||||||||||||||||||||||
Sbjct: 439 cctggaagcagtacatgaggagggcgacttg 469
>gb|CW299583.1|CW299583 104_782_11463196_148_35687_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463196, DNA
sequence
Length = 703
Score = 276 bits (139), Expect = 5e-072
Identities = 148/151 (98%)
Strand = Plus / Minus
Query: 972 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaa 1031
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaacggtgctgaaa 383
Query: 1032 ttggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgatt 1091
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 tcggtggagcatttggtggagaaaaggcaactggtggtggacgagaagcagggagtgatt 323
Query: 1092 cctggaagcagtacatgaggagggcgacttg 1122
|||||||||||||||||||||||||||||||
Sbjct: 322 cctggaagcagtacatgaggagggcgacttg 292
>gb|BG412872.1|BG412872 OV2_36_A01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 311
Score = 274 bits (138), Expect = 2e-071
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 233
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 293
Query: 124 gggtgttataacggcatt 141
||||||||||||||||||
Sbjct: 294 gggtgttataacggcatt 311
>gb|CF757462.1|CF757462 DSAF1_18_B11.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_18_B11_A011 3', mRNA sequence
Length = 353
Score = 272 bits (137), Expect = 9e-071
Identities = 143/145 (98%)
Strand = Plus / Plus
Query: 1052 gaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgagg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgagg 60
Query: 1112 agggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaatttt 1171
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 agggcgacttgtacaatcaactatggaagcgagctacctctagcccagggaatcaatttt 120
Query: 1172 ggttaatcctgcagaaatgttgcgc 1196
|||||||||||||| ||||||||||
Sbjct: 121 ggttaatcctgcaggaatgttgcgc 145
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 146 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 205
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 206 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 260
>gb|CF761921.1|CF761921 DSAF1_83_D11.b1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_83_D11_A011 5', mRNA sequence
Length = 368
Score = 272 bits (137), Expect = 9e-071
Identities = 143/145 (98%)
Strand = Plus / Plus
Query: 1052 gaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgagg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgagg 60
Query: 1112 agggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaatttt 1171
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 agggcgacttgtacaatcaactatggaagcgagctacctctagcccagggaatcaatttt 120
Query: 1172 ggttaatcctgcagaaatgttgcgc 1196
|||||||||||||| ||||||||||
Sbjct: 121 ggttaatcctgcaggaatgttgcgc 145
Score = 79.8 bits (40), Expect = 7e-013
Identities = 102/120 (85%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||||| ||||||||| || |
Sbjct: 146 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttatcggcgtcagtcgtca 205
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 206 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 260
>gb|CW180913.1|CW180913 104_595_11163209_116_36641_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163209, DNA
sequence
Length = 633
Score = 270 bits (136), Expect = 3e-070
Identities = 145/148 (97%)
Strand = Plus / Minus
Query: 972 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaa 1031
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 148 ggccccatggtagtgattgtggtatagtgaatgtgaacatacctactaacggtgctgaaa 89
Query: 1032 ttggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgatt 1091
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 88 tcggtggagcatttggtggagaaaaggcaactggtggtggacgagaagcagggagtgatt 29
Query: 1092 cctggaagcagtacatgaggagggcgac 1119
||||||||||||||||||||||||||||
Sbjct: 28 cctggaagcagtacatgaggagggcgac 1
>gb|BE359150.1|BE359150 DG1_39_C11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 240 bits (121), Expect = 3e-061
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 496
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 556
Query: 124 g 124
|
Sbjct: 557 g 557
>gb|BG159218.1|BG159218 RHIZ2_27_H02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 299
Score = 240 bits (121), Expect = 3e-061
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 5 gaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccatt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 171 gaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatcgatt 230
Query: 65 ataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 231 ataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggtgttgtg 290
Query: 125 ggtgttata 133
|||||||||
Sbjct: 291 ggtgttata 299
>gb|CW180914.1|CW180914 104_595_11163209_148_36645_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163209, DNA
sequence
Length = 670
Score = 238 bits (120), Expect = 1e-060
Identities = 126/128 (98%)
Strand = Plus / Plus
Query: 747 tttttggaggatctgccattgaatcagaaggaaactttgtgcaaccaacaattgtggaaa 806
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tttttggaggatctgccattgaatcagaaggaaacttcgtgcaaccaacaattgtggaaa 60
Query: 807 ttacaccttctgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatga 866
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttacaccttctgcagcagttgtgaaagaagaactctttggtcctgtcctttatgttatga 120
Query: 867 aatttcag 874
||||||||
Sbjct: 121 aatttcag 128
Score = 186 bits (94), Expect = 4e-045
Identities = 100/102 (98%)
Strand = Plus / Plus
Query: 872 cagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttct 931
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cagagcttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttct 294
Query: 932 atatttacaaagaggccagatattatttttaagtggctcggg 973
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 295 atatttacaaagaggccagaaattatttttaagtggctcggg 336
>gb|BE593274.1|BE593274 WS1_99_G04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 296
Score = 192 bits (97), Expect = 6e-047
Identities = 115/121 (95%)
Strand = Plus / Plus
Query: 1074 gagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaact 1133
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 5 gagaagcagggagtgatttctggaagcagtacatgaggaggttgacttgtacaatcaact 64
Query: 1134 atgggagcgagctacctctagcccagggaatcaattttggttaatcctgcagaaatgttg 1193
|||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 65 atggaagcgagctacctttagcccagggaatcaattttggttaatcctgcaggaatgttg 124
Query: 1194 c 1194
|
Sbjct: 125 c 125
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Plus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 128 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 187
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 188 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 242
>gb|CW299582.1|CW299582 104_782_11463196_116_35690_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463196, DNA
sequence
Length = 646
Score = 186 bits (94), Expect = 4e-045
Identities = 100/102 (98%)
Strand = Plus / Plus
Query: 872 cagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttct 931
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 cagagcttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttct 86
Query: 932 atatttacaaagaggccagatattatttttaagtggctcggg 973
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 87 atatttacaaagaggccagaaattatttttaagtggctcggg 128
>gb|CW288778.1|CW288778 104_767_11412131_116_35543_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412131, DNA
sequence
Length = 666
Score = 129 bits (65), Expect = 8e-028
Identities = 71/73 (97%)
Strand = Plus / Minus
Query: 1122 gtacaatcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcct 1181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtacaatcaactatggaagcgagctacctctagcccagggaatcaattttggttaatcct 521
Query: 1182 gcagaaatgttgc 1194
|||| ||||||||
Sbjct: 520 gcaggaatgttgc 508
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Minus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 505 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 446
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 445 aacgtaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 391
>gb|BG052659.1|BG052659 RHIZ2_27_H02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 120
Score = 97.6 bits (49), Expect = 3e-018
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1128 tcaactatgggagcgagctacctctagcccagggaatcaattttggttaatcctgcagaa 1187
|||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| |
Sbjct: 1 tcaactatggaagcgagatacctatagcccagggaatcaattttggttaatcttgcagga 60
Query: 1188 atgttgcgc 1196
|||||||||
Sbjct: 61 atgttgcgc 69
>gb|CW132884.1|CW132884 104_516_11116455_148_34802_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116455, DNA
sequence
Length = 693
Score = 71.9 bits (36), Expect = 2e-010
Identities = 53/56 (94%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 1139 agcgagctacctctagcccagggaatcaattttggttaatcctgcagaaatgttgc 1194
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 669 agcgagctacctctagccca-ggaatcaatttt-gttaatcctgcaggaatgttgc 616
Score = 71.9 bits (36), Expect = 2e-010
Identities = 101/120 (84%), Gaps = 7/120 (5%)
Strand = Plus / Minus
Query: 1247 tgcaaccgcatttgagatctcagc--agacttgagcagcatttattggcgtcagttgtga 1304
||||||||||||||||||||| || ||||| |||||| ||| | ||||||||| || |
Sbjct: 613 tgcaaccgcatttgagatctctgcatagactcgagcagtgtttgtcggcgtcagtcgtca 554
Query: 1305 aacttaaactgcaggagcatcttgtacataaataaaataagatgtttgttgctcgtgggc 1364
||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct: 553 aacctaaattgcaggggcat-gtgtac----ataaaataagatgtttgttgctcgtgggc 499
>gb|CL153153.1|CL153153 104_337_10780514_116_31368_146 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780514, DNA
sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 156 ctgtgcttggttggaatgctt 176
|||||||||||||||||||||
Sbjct: 331 ctgtgcttggttggaatgctt 351
>gb|CW496656.1|CW496656 fsbb001f289a05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289a05, DNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 156 ctgtgcttggttggaatgctt 176
|||||||||||||||||||||
Sbjct: 54 ctgtgcttggttggaatgctt 34
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 401,150
Number of Sequences: 832831
Number of extensions: 401150
Number of successful extensions: 110545
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110455
Number of HSP's gapped (non-prelim): 85
length of query: 1462
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1442
effective length of database: 474,703,049
effective search space: 684521796658
effective search space used: 684521796658
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)