BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW681129.1|AW681129 WS1_9_A12.b1_A002 Water-stressed 1 (... 886 0.0
gb|BE355359.1|BE355359 DG1_114_A04.b1_A002 Dark Grown 1 (DG... 886 0.0
gb|CD224035.1|CD224035 CCC1_31_A02.g1_A007 Callus culture/c... 886 0.0
gb|AW745346.1|AW745346 WS1_33_G08.b1_A002 Water-stressed 1 ... 878 0.0
gb|CD223928.1|CD223928 CCC1_31_A02.b1_A007 Callus culture/c... 842 0.0
gb|BE355440.1|BE355440 DG1_114_A04.b2_A002 Dark Grown 1 (DG... 799 0.0
gb|BE125232.1|BE125232 DG1_16_A11.b1_A002 Dark Grown 1 (DG1... 743 0.0
gb|BE125917.1|BE125917 DG1_59_E12.b1_A002 Dark Grown 1 (DG1... 688 0.0
gb|CF759327.1|CF759327 DSAF1_43_G09.b1_A011 Drought-stresse... 678 0.0
gb|AW679953.1|AW679953 WS1_33_A07.g1_A002 Water-stressed 1 ... 599 e-169
gb|BE355521.1|BE355521 DG1_114_A04.g1_A002 Dark Grown 1 (DG... 587 e-166
gb|AW679913.1|AW679913 WS1_33_G08.g1_A002 Water-stressed 1 ... 563 e-158
gb|AW746635.1|AW746635 WS1_54_B05.b1_A002 Water-stressed 1 ... 456 e-126
gb|AW746704.1|AW746704 WS1_54_B05.g1_A002 Water-stressed 1 ... 456 e-126
gb|AW923785.1|AW923785 DG1_59_E12.g1_A002 Dark Grown 1 (DG1... 389 e-106
gb|CW075942.1|CW075942 104_363_10809839_116_31801_287 Sorgh... 377 e-102
gb|CW447470.1|CW447470 fsbb001f180j18k0 Sorghum methylation... 329 3e-088
gb|CW447469.1|CW447469 fsbb001f180j18f0 Sorghum methylation... 321 7e-086
gb|CW075941.1|CW075941 104_363_10809839_114_31800_287 Sorgh... 305 4e-081
gb|CW486870.1|CW486870 fsbb001f252g09f0 Sorghum methylation... 212 4e-053
gb|CW420516.1|CW420516 fsbb001f126n23k0 Sorghum methylation... 210 2e-052
gb|AW681134.1|AW681134 WS1_9_A12.g1_A002 Water-stressed 1 (... 200 2e-049
gb|CW190163.1|CW190163 104_611_11174356_148_36747_004 Sorgh... 176 2e-042
gb|CW486871.1|CW486871 fsbb001f252g09k0 Sorghum methylation... 52 1e-004
>gb|AW681129.1|AW681129 WS1_9_A12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 641
Score = 886 bits (447), Expect = 0.0
Identities = 512/531 (96%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 57 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 116
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 176
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 236
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 237 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 296
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 297 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 356
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 416
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 417 acctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatca 476
Query: 509 agccaatccagtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgtttta 567
||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct: 477 agccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgagtgtttta 536
Query: 568 agagagaaccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 537 agagagaattttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 586
>gb|BE355359.1|BE355359 DG1_114_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 609
Score = 886 bits (447), Expect = 0.0
Identities = 512/531 (96%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 37 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 96
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 156
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 216
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 217 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 276
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 277 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 336
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 337 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 396
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 397 acctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatca 456
Query: 509 agccaatccagtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgtttta 567
||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct: 457 agccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgagtgtttta 516
Query: 568 agagagaaccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 517 agagagaattttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 566
>gb|CD224035.1|CD224035 CCC1_31_A02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_A02_A007 5', mRNA sequence
Length = 651
Score = 886 bits (447), Expect = 0.0
Identities = 512/531 (96%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 108 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 167
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 227
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 287
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 288 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 347
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 348 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 407
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 408 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 467
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 468 acctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatca 527
Query: 509 agccaatccagtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgtttta 567
||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct: 528 agccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgagtgtttta 587
Query: 568 agagagaaccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 588 agagagaattttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 637
>gb|AW745346.1|AW745346 WS1_33_G08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 601
Score = 878 bits (443), Expect = 0.0
Identities = 511/531 (96%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 44 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 103
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 163
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 164 ccatgatccgcaaggaggtcttcggctccccctccgtcctccgcgaggccaggaggatca 223
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 224 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 283
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 284 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 343
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 344 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 403
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 404 acctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatca 463
Query: 509 agccaatccagtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgtttta 567
||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct: 464 agccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgagtgtttta 523
Query: 568 agagagaaccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 524 agagagaattttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 573
>gb|CD223928.1|CD223928 CCC1_31_A02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_A02_A007 3', mRNA sequence
Length = 608
Score = 842 bits (425), Expect = 0.0
Identities = 487/505 (96%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 115 cacaagggcaagttcgggcacgagttcctcgagttcgagttccgccccgacggcaagctc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cacaagggcaagttcgggcacgagttcctcgagttcgagttccgccccgacggcaagctc 61
Query: 175 cgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtc 121
Query: 235 tccccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tccccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggag 181
Query: 295 gacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatg 354
||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 182 gacgatagcaactggcccgaacccgaccgcatcggccgccaggagctcgagatcgtcatg 241
Query: 355 ggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtcc 414
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtcc 301
Query: 415 agcaaggacccggagggactccggatcttctactacctcgtccaggatctgaagtgcttc 474
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 302 agcaaggacccggagggcctccggatcttctactacctcgtccaggatctgaagtgtttt 361
Query: 475 gtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatct 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcc 421
Query: 535 caagccttcatgcgactgtttt-ggagtgttttaagagagaaccttgtaccatgttaaga 593
||||||||| || |||||||| |||||||||||||||||| |||||||||| |||||
Sbjct: 422 caagccttcgtgtaactgttttatgagtgttttaagagagaattttgtaccatg-taaga 480
Query: 594 tgatgttgagcttgtgacgatgcgc 618
|| ||||||||||||||||||||||
Sbjct: 481 tgctgttgagcttgtgacgatgcgc 505
>gb|BE355440.1|BE355440 DG1_114_A04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 475
Score = 799 bits (403), Expect = 0.0
Identities = 430/439 (97%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 37 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 96
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 156
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 216
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 217 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 276
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 277 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 336
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 337 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 396
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatca 508
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 397 acctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatca 456
Query: 509 agccaatccagtcttgagc 527
|||||||||||||||||||
Sbjct: 457 agccaatccagtcttgagc 475
>gb|BE125232.1|BE125232 DG1_16_A11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 743 bits (375), Expect = 0.0
Identities = 402/411 (97%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 93 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 152
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 212
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 272
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 273 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 332
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 333 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 392
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 393 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 452
Query: 449 acctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccact 499
|||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 453 acctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccact 503
>gb|BE125917.1|BE125917 DG1_59_E12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 688 bits (347), Expect = 0.0
Identities = 368/375 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 118 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 177
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 237
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 297
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 298 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 357
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 358 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 417
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 418 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 477
Query: 449 acctcgtccaggatc 463
|||||||||||||||
Sbjct: 478 acctcgtccaggatc 492
>gb|CF759327.1|CF759327 DSAF1_43_G09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_43_G09_A011 5', mRNA sequence
Length = 388
Score = 678 bits (342), Expect = 0.0
Identities = 363/370 (98%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 19 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 78
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 138
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 198
Query: 269 tccaggagtccgatatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcg 328
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 199 tccaggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcg 258
Query: 329 gccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccacttccaaga 388
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 259 gccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaaga 318
Query: 389 tcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatcttctact 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 tcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctact 378
Query: 449 acctcgtcca 458
||||||||||
Sbjct: 379 acctcgtcca 388
>gb|AW679953.1|AW679953 WS1_33_A07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 612
Score = 599 bits (302), Expect = e-169
Identities = 364/382 (95%), Gaps = 2/382 (0%)
Strand = Plus / Plus
Query: 238 ccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggac 60
Query: 298 gacagcaactggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggc 357
|| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 gatagcaactggcccgaacccgaccgcatcggccgccaggagctcgagatcgtcatgggc 120
Query: 358 aacgaacacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagc 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagc 180
Query: 418 aaggacccggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtg 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 181 aaggacccggagggcctccggatcttctactacctcgtccaggatctgaagtgttttgtg 240
Query: 478 ttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatctcaa 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 ttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcccaa 300
Query: 538 gccttcatgcgactgtttt-ggagtgttttaagagagaaccttgtaccatgttaagatga 596
|||||| || |||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct: 301 gccttcgtgtaactgttttatgagtgttttaagagagaattttgtaccatg-taagatgc 359
Query: 597 tgttgagcttgtgacgatgcgc 618
||||||||||||||||||||||
Sbjct: 360 tgttgagcttgtgacgatgcgc 381
Score = 46.1 bits (23), Expect = 0.006
Identities = 71/85 (83%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacggcacactagtattcttct 760
|||||||| ||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 479 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg---cacta---ttcttct 529
Query: 761 ctgttatcagcgctctgttgaagga 785
|||||||||| |||| | |||||||
Sbjct: 530 ctgttatcagtgctccgctgaagga 554
>gb|BE355521.1|BE355521 DG1_114_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 587 bits (296), Expect = e-166
Identities = 358/376 (95%), Gaps = 2/376 (0%)
Strand = Plus / Plus
Query: 244 gtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgacagc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 gtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgatagc 60
Query: 304 aactggcctgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggcaacgaa 363
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 aactggcccgaacccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgag 120
Query: 364 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 180
Query: 424 ccggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtgttttca 483
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 181 ccggagggcctccggatcttctactacctcgtccaggatctgaagtgttttgtgttttca 240
Query: 484 ctcatcaacctccacttcaagatcaagccaatccagtcttgagctccatctcaagccttc 543
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 ctcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcccaagccttc 300
Query: 544 atgcgactgtttt-ggagtgttttaagagagaaccttgtaccatgttaagatgatgttga 602
|| |||||||| |||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 301 gtgtaactgttttatgagtgttttaagagagaattttgtaccatg-taagatgctgttga 359
Query: 603 gcttgtgacgatgcgc 618
||||||||||||||||
Sbjct: 360 gcttgtgacgatgcgc 375
Score = 40.1 bits (20), Expect = 0.37
Identities = 37/42 (88%), Gaps = 3/42 (7%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacg 742
|||||||| ||||||||||||| ||||||||||||||||
Sbjct: 473 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg 511
>gb|AW679913.1|AW679913 WS1_33_G08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 563 bits (284), Expect = e-158
Identities = 349/368 (94%), Gaps = 2/368 (0%)
Strand = Plus / Plus
Query: 252 cgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgacagcaactggcc 311
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 cgaggccaggaggatcatccaggagtccgatatcatgaaggaggtcgatagcaactggcc 60
Query: 312 tgagcccgaccgcatcggccgacaggagctcgagatcgtcatgggcaacgaacacatttc 371
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 cgaacccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttc 120
Query: 372 attcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggacccggaggg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggacccggaggg 180
Query: 432 actccggatcttctactacctcgtccaggatctgaagtgcttcgtgttttcactcatcaa 491
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 181 cctccggatcttctactacctcgtccaggatctgaagtgttttgtgttttcactcatcaa 240
Query: 492 cctccacttcaagatcaagccaatccagtcttgagctccatctcaagccttcatgcgact 551
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct: 241 cctccacttcaagatcaagccaatccagtcttgagctccatcccaagccttcgtgtaact 300
Query: 552 gtttt-ggagtgttttaagagagaaccttgtaccatgttaagatgatgttgagcttgtga 610
||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct: 301 gttttatgagtgttttaagagagaattttgtaccatg-taagatgctgttgagcttgtga 359
Query: 611 cgatgcgc 618
||||||||
Sbjct: 360 cgatgcgc 367
Score = 46.1 bits (23), Expect = 0.006
Identities = 71/85 (83%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacggcacactagtattcttct 760
|||||||| ||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 465 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg---cacta---ttcttct 515
Query: 761 ctgttatcagcgctctgttgaagga 785
|||||||||| |||| | |||||||
Sbjct: 516 ctgttatcagtgctccgctgaagga 540
>gb|AW746635.1|AW746635 WS1_54_B05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 456 bits (230), Expect = e-126
Identities = 283/298 (94%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 322 cgcatcggccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccact 381
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 cgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccact 60
Query: 382 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatc 441
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatc 120
Query: 442 ttctactacctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttc 501
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 121 ttctactacctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttc 180
Query: 502 aagatcaagccaatccagtcttgagctccatctcaagccttcatgcgactgtttt-ggag 560
|||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||
Sbjct: 181 aagatcaagccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgag 240
Query: 561 tgttttaagagagaaccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 241 tgttttaagagagaattttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 297
Score = 40.1 bits (20), Expect = 0.37
Identities = 37/42 (88%), Gaps = 3/42 (7%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacg 742
|||||||| ||||||||||||| ||||||||||||||||
Sbjct: 395 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg 433
>gb|AW746704.1|AW746704 WS1_54_B05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 456 bits (230), Expect = e-126
Identities = 283/298 (94%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 322 cgcatcggccgacaggagctcgagatcgtcatgggcaacgaacacatttcattcaccact 381
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 cgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccact 60
Query: 382 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggactccggatc 441
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatc 120
Query: 442 ttctactacctcgtccaggatctgaagtgcttcgtgttttcactcatcaacctccacttc 501
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 121 ttctactacctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttc 180
Query: 502 aagatcaagccaatccagtcttgagctccatctcaagccttcatgcgactgtttt-ggag 560
|||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||
Sbjct: 181 aagatcaagccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgag 240
Query: 561 tgttttaagagagaaccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 241 tgttttaagagagaattttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 297
Score = 46.1 bits (23), Expect = 0.006
Identities = 71/85 (83%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacggcacactagtattcttct 760
|||||||| ||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 395 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg---cacta---ttcttct 445
Query: 761 ctgttatcagcgctctgttgaagga 785
|||||||||| |||| | |||||||
Sbjct: 446 ctgttatcagtgctccgctgaagga 470
>gb|AW923785.1|AW923785 DG1_59_E12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 350
Score = 389 bits (196), Expect = e-106
Identities = 243/256 (94%), Gaps = 2/256 (0%)
Strand = Plus / Plus
Query: 364 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 65
Query: 424 ccggagggactccggatcttctactacctcgtccaggatctgaagtgcttcgtgttttca 483
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 66 ccggagggcctccggatcttctactacctcgtccaggatctgaagtgttttgtgttttca 125
Query: 484 ctcatcaacctccacttcaagatcaagccaatccagtcttgagctccatctcaagccttc 543
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 126 ctcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcccaagccttc 185
Query: 544 atgcgactgtttt-ggagtgttttaagagagaaccttgtaccatgttaagatgatgttga 602
|| |||||||| |||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 186 gtgtaactgttttatgagtgttttaagagagaattttgtaccatg-taagatgctgttga 244
Query: 603 gcttgtgacgatgcgc 618
||||||||||||||||
Sbjct: 245 gcttgtgacgatgcgc 260
>gb|CW075942.1|CW075942 104_363_10809839_116_31801_287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809839, DNA
sequence
Length = 681
Score = 377 bits (190), Expect = e-102
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 285 agttctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagt 344
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 404
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 464
Query: 269 tccaggagtccgat 282
||||||||||||||
Sbjct: 465 tccaggagtccgat 478
Score = 81.8 bits (41), Expect = 1e-013
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 281 atatcatgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacagg 337
||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||
Sbjct: 625 atatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccagg 681
>gb|CW447470.1|CW447470 fsbb001f180j18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180j18, DNA
sequence
Length = 715
Score = 329 bits (166), Expect = 3e-088
Identities = 187/194 (96%)
Strand = Plus / Plus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 306 agttctacctgcggtattacgtggggcacaagggcaagttcggccacgagttcctcgagt 365
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 425
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||
Sbjct: 426 ccatgatccgcaaggaggtgttcgtctcccgctccgccctccgcgaggcgaggaggatca 485
Query: 269 tccaggagtccgat 282
||||| ||||||||
Sbjct: 486 tccagcagtccgat 499
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||| |||||| ||||| |||||||| |||||| || ||| ||| | |||||||||||
Sbjct: 640 atgagggaggatgacagaaactggcccgagcccaactacattggcaggcaggagctcgaa 699
Query: 346 atcgtcatgggcaa 359
||||| ||||||||
Sbjct: 700 atcgttatgggcaa 713
>gb|CW447469.1|CW447469 fsbb001f180j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180j18, DNA
sequence
Length = 714
Score = 321 bits (162), Expect = 7e-086
Identities = 186/194 (95%)
Strand = Plus / Minus
Query: 89 agttctacctgcggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagt 148
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 675 agttctacctgcggtattacgtggggcacaagggcaagttcggccacgagttcctcgagt 616
Query: 149 tcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgaca 208
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 615 tcgagttccgccccgacggcaagctccggtacgccaacaactccaactacaagaacgaca 556
Query: 209 ccatgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatca 268
||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||
Sbjct: 555 ccatgatccgcaaggaggtgttcgtctcccgctccgccctccgcgaggcgaggaggatca 496
Query: 269 tccaggagtccgat 282
||||| ||||||||
Sbjct: 495 tccagcagtccgat 482
Score = 91.7 bits (46), Expect = 1e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||| |||||| ||||| |||||||| |||||| || ||| ||| | |||||||||||
Sbjct: 341 atgagggaggatgacagaaactggcccgagcccaactacattggcaggcaggagctcgaa 282
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
||||| |||||||| || ||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct: 281 atcgttatgggcaatgagcacatctcattcaccacctccaagattggatcccttgtcgat 222
Query: 406 gt 407
||
Sbjct: 221 gt 220
>gb|CW075941.1|CW075941 104_363_10809839_114_31800_287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809839, DNA
sequence
Length = 705
Score = 305 bits (154), Expect = 4e-081
Identities = 172/178 (96%)
Strand = Plus / Minus
Query: 283 atcatgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctc 342
||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 438 atcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccaggagctc 379
Query: 343 gagatcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtc 402
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtc 319
Query: 403 gatgtccagtccagcaaggacccggagggactccggatcttctactacctcgtccagg 460
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 318 gatgtccagtccagcaaggacccggagggcctccggatcttctactacctcgtccagg 261
Score = 236 bits (119), Expect = 3e-060
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 164 acggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaagg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaagg 646
Query: 224 aggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatccaggagtccgat 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatccaggagtccgat 587
>gb|CW486870.1|CW486870 fsbb001f252g09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252g09, DNA
sequence
Length = 661
Score = 212 bits (107), Expect = 4e-053
Identities = 151/163 (92%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatc 411
Query: 517 cagtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgttttaagagagaa 575
||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||
Sbjct: 412 cagtcttgagctccatcccaagccttcgtgtaactgttttatgagtgttttaagagagaa 471
Query: 576 ccttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 472 ttttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 513
Score = 40.1 bits (20), Expect = 0.37
Identities = 37/42 (88%), Gaps = 3/42 (7%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacg 742
|||||||| ||||||||||||| ||||||||||||||||
Sbjct: 611 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg 649
>gb|CW420516.1|CW420516 fsbb001f126n23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f126n23, DNA
sequence
Length = 796
Score = 210 bits (106), Expect = 2e-052
Identities = 150/162 (92%), Gaps = 2/162 (1%)
Strand = Plus / Minus
Query: 458 aggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatcc 517
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatcc 737
Query: 518 agtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgttttaagagagaac 576
|||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||
Sbjct: 736 agtcttgagctccatcccaagccttcgtgtaactgttttatgagtgttttaagagagaat 677
Query: 577 cttgtaccatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 676 tttgtaccatg-taagatgctgttgagcttgtgacgatgcgc 636
Score = 46.1 bits (23), Expect = 0.006
Identities = 71/85 (83%), Gaps = 9/85 (10%)
Strand = Plus / Minus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacggcacactagtattcttct 760
|||||||| ||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 538 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg---cacta---ttcttct 488
Query: 761 ctgttatcagcgctctgttgaagga 785
|||||||||| |||| | |||||||
Sbjct: 487 ctgttatcagtgctccgctgaagga 463
>gb|AW681134.1|AW681134 WS1_9_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 371
Score = 200 bits (101), Expect = 2e-049
Identities = 145/157 (92%), Gaps = 2/157 (1%)
Strand = Plus / Plus
Query: 463 ctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatccagtct 522
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatccagtct 60
Query: 523 tgagctccatctcaagccttcatgcgactgtttt-ggagtgttttaagagagaaccttgt 581
||||||||||| ||||||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 61 tgagctccatcccaagccttcgtgtaactgttttatgagtgttttaagagagaattttgt 120
Query: 582 accatgttaagatgatgttgagcttgtgacgatgcgc 618
|||||| ||||||| ||||||||||||||||||||||
Sbjct: 121 accatg-taagatgctgttgagcttgtgacgatgcgc 156
Score = 46.1 bits (23), Expect = 0.006
Identities = 71/85 (83%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacggcacactagtattcttct 760
|||||||| ||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 254 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg---cacta---ttcttct 304
Query: 761 ctgttatcagcgctctgttgaagga 785
|||||||||| |||| | |||||||
Sbjct: 305 ctgttatcagtgctccgctgaagga 329
>gb|CW190163.1|CW190163 104_611_11174356_148_36747_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174356, DNA
sequence
Length = 724
Score = 176 bits (89), Expect = 2e-042
Identities = 123/133 (92%), Gaps = 1/133 (0%)
Strand = Plus / Minus
Query: 457 caggatctgaagtgcttcgtgttttcactcatcaacctccacttcaagatcaagccaatc 516
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 caggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatc 77
Query: 517 cagtcttgagctccatctcaagccttcatgcgactgtttt-ggagtgttttaagagagaa 575
||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||
Sbjct: 76 cagtcttgagctccatcccaagccttcgtgtaactgttttatgagtgttttaagagagaa 17
Query: 576 ccttgtaccatgt 588
|||||||||||
Sbjct: 16 ttttgtaccatgt 4
>gb|CW486871.1|CW486871 fsbb001f252g09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252g09, DNA
sequence
Length = 724
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 589 taagatgatgttgagcttgtgacgatgcgc 618
||||||| ||||||||||||||||||||||
Sbjct: 723 taagatgctgttgagcttgtgacgatgcgc 694
Score = 46.1 bits (23), Expect = 0.006
Identities = 71/85 (83%), Gaps = 9/85 (10%)
Strand = Plus / Minus
Query: 701 ttcagtttcctgttgggtggagtgttcttgtcgtttggcacggcacactagtattcttct 760
|||||||| ||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 596 ttcagttttgtgttgggtggagt---cttgtcgtttggcacg---cacta---ttcttct 546
Query: 761 ctgttatcagcgctctgttgaagga 785
|||||||||| |||| | |||||||
Sbjct: 545 ctgttatcagtgctccgctgaagga 521
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,765
Number of Sequences: 832831
Number of extensions: 204765
Number of successful extensions: 57361
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57262
Number of HSP's gapped (non-prelim): 61
length of query: 964
length of database: 491,359,669
effective HSP length: 20
effective length of query: 944
effective length of database: 474,703,049
effective search space: 448119678256
effective search space used: 448119678256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)