BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW681129.1|AW681129 WS1_9_A12.b1_A002 Water-stressed 1 (... 856 0.0
gb|CD224035.1|CD224035 CCC1_31_A02.g1_A007 Callus culture/c... 854 0.0
gb|BE355359.1|BE355359 DG1_114_A04.b1_A002 Dark Grown 1 (DG... 841 0.0
gb|AW745346.1|AW745346 WS1_33_G08.b1_A002 Water-stressed 1 ... 831 0.0
gb|BE355440.1|BE355440 DG1_114_A04.b2_A002 Dark Grown 1 (DG... 805 0.0
gb|CD223928.1|CD223928 CCC1_31_A02.b1_A007 Callus culture/c... 775 0.0
gb|BE125232.1|BE125232 DG1_16_A11.b1_A002 Dark Grown 1 (DG1... 771 0.0
gb|BE125917.1|BE125917 DG1_59_E12.b1_A002 Dark Grown 1 (DG1... 731 0.0
gb|CF759327.1|CF759327 DSAF1_43_G09.b1_A011 Drought-stresse... 686 0.0
gb|AW679953.1|AW679953 WS1_33_A07.g1_A002 Water-stressed 1 ... 547 e-154
gb|BE355521.1|BE355521 DG1_114_A04.g1_A002 Dark Grown 1 (DG... 535 e-150
gb|AW679913.1|AW679913 WS1_33_G08.g1_A002 Water-stressed 1 ... 511 e-143
gb|AW746635.1|AW746635 WS1_54_B05.b1_A002 Water-stressed 1 ... 404 e-111
gb|AW746704.1|AW746704 WS1_54_B05.g1_A002 Water-stressed 1 ... 404 e-111
gb|CW075942.1|CW075942 104_363_10809839_116_31801_287 Sorgh... 402 e-110
gb|CW075941.1|CW075941 104_363_10809839_114_31800_287 Sorgh... 329 2e-088
gb|AW923785.1|AW923785 DG1_59_E12.g1_A002 Dark Grown 1 (DG1... 329 2e-088
gb|CW447470.1|CW447470 fsbb001f180j18k0 Sorghum methylation... 299 2e-079
gb|CW447469.1|CW447469 fsbb001f180j18f0 Sorghum methylation... 291 4e-077
gb|CW190163.1|CW190163 104_611_11174356_148_36747_004 Sorgh... 145 6e-033
gb|CW486870.1|CW486870 fsbb001f252g09f0 Sorghum methylation... 145 6e-033
gb|CW420516.1|CW420516 fsbb001f126n23k0 Sorghum methylation... 143 3e-032
gb|AW681134.1|AW681134 WS1_9_A12.g1_A002 Water-stressed 1 (... 133 2e-029
gb|CW269999.1|CW269999 104_741_11402153_116_35324_073 Sorgh... 48 0.001
gb|CW486871.1|CW486871 fsbb001f252g09k0 Sorghum methylation... 46 0.004
gb|CW325724.1|CW325724 104_820_11477841_116_35929_035 Sorgh... 44 0.017
gb|CW325725.1|CW325725 104_820_11477841_148_35928_035 Sorgh... 44 0.017
gb|CW248252.1|CW248252 104_709_11222200_116_35032_056 Sorgh... 42 0.069
gb|CW248253.1|CW248253 104_709_11222200_148_35028_056 Sorgh... 42 0.069
gb|CW304322.1|CW304322 104_789_11465721_148_35705_043 Sorgh... 42 0.069
gb|CW408435.1|CW408435 fsbb001f102f07f0 Sorghum methylation... 42 0.069
gb|CW408436.1|CW408436 fsbb001f102f07k0 Sorghum methylation... 42 0.069
gb|CW415016.1|CW415016 fsbb001f114o22f0 Sorghum methylation... 42 0.069
gb|CW500187.1|CW500187 fsbb001f295g02f0 Sorghum methylation... 42 0.069
gb|CW439495.1|CW439495 fsbb001f157k19f0 Sorghum methylation... 40 0.27
gb|BG739620.1|BG739620 EM1_73_B01.b1_A002 Embryo 1 (EM1) So... 40 0.27
gb|CD422914.1|CD422914 SA1_38_E10.g1_A002 Salicylic acid-tr... 40 0.27
>gb|AW681129.1|AW681129 WS1_9_A12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 641
Score = 856 bits (432), Expect = 0.0
Identities = 503/527 (95%), Gaps = 6/527 (1%)
Strand = Plus / Plus
Query: 17 aatctatggcggcggccggcggcgagaacagcggcgctggcgagggcgagggcgagttct 76
|||| |||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 9 aatcgatggcggcggccggcggcgagaacagcggcgc------gggcgagggggagttct 62
Query: 77 acctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagc 136
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 63 acctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagttcgagt 122
Query: 137 tccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatga 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatga 182
Query: 197 tccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatccagg 256
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 183 tccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatccagg 242
Query: 257 agtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgcc 316
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 243 agtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgcc 302
Query: 317 aggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggct 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggct 362
Query: 377 ccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactaccttg 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 363 ccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacctcg 422
Query: 437 tccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaa 496
||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct: 423 tccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaa 482
Query: 497 tccagtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
||||||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 483 tccagtcttgagctccatcccaagccttcgtgtaactgttttatgag 529
>gb|CD224035.1|CD224035 CCC1_31_A02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_A02_A007 5', mRNA sequence
Length = 651
Score = 854 bits (431), Expect = 0.0
Identities = 505/530 (95%), Gaps = 6/530 (1%)
Strand = Plus / Plus
Query: 14 ggaaatctatggcggcggccggcggcgagaacagcggcgctggcgagggcgagggcgagt 73
||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct: 57 ggaaatcgatggcggcggccggcggcgtgaacagcggcgc------gggcgagggggagt 110
Query: 74 tctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcg 133
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 111 tctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagttcg 170
Query: 134 agctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 193
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 agttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 230
Query: 194 tgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatcc 253
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 231 tgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatcc 290
Query: 254 aggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggcc 313
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 291 aggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggcc 350
Query: 314 gccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcg 410
Query: 374 gctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacc 470
Query: 434 ttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagc 493
| |||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||
Sbjct: 471 tcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagc 530
Query: 494 caatccagtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
|||||||||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 531 caatccagtcttgagctccatcccaagccttcgtgtaactgttttatgag 580
>gb|BE355359.1|BE355359 DG1_114_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 609
Score = 841 bits (424), Expect = 0.0
Identities = 492/515 (95%), Gaps = 6/515 (1%)
Strand = Plus / Plus
Query: 29 cggccggcggcgagaacagcggcgctggcgagggcgagggcgagttctacctgcgctact 88
||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 1 cggccggcggcgagaacagcggcgc------gggcgagggggagttctacctgcggtact 54
Query: 89 acgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgccccgacg 148
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 55 acgtgggtcacaagggcaagttcgggcacgagttcctcgagttcgagttccgccccgacg 114
Query: 149 gcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggagg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggagg 174
Query: 209 tcttcgtctcgccctccgtcctccgcgaggccaggaggatcatccaggagtccgacatca 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 175 tcttcgtctccccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatca 234
Query: 269 tgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgaga 328
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 235 tgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccaggagctcgaga 294
Query: 329 tcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatg 354
Query: 389 tccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctga 448
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 355 tccagtccagcaaggacccggagggcctccggatcttctactacctcgtccaggatctga 414
Query: 449 agtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatccagtcttgag 508
||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 agtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttgag 474
Query: 509 ctccatcccaagccttcatgtagctggtttgtgag 543
||||||||||||||||| |||| ||| ||| ||||
Sbjct: 475 ctccatcccaagccttcgtgtaactgttttatgag 509
>gb|AW745346.1|AW745346 WS1_33_G08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 601
Score = 831 bits (419), Expect = 0.0
Identities = 490/514 (95%), Gaps = 6/514 (1%)
Strand = Plus / Plus
Query: 30 ggccggcggcgagaacagcggcgctggcgagggcgagggcgagttctacctgcgctacta 89
|||||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct: 9 ggccggcggcgagaacagcggcgc------gggcgagggggagttctacctgcggtacta 62
Query: 90 cgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgccccgacgg 149
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 63 cgtgggtcacaagggcaagttcgggcacgagttcctcgagttcgagttccgccccgacgg 122
Query: 150 caagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 caagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 182
Query: 210 cttcgtctcgccctccgtcctccgcgaggccaggaggatcatccaggagtccgacatcat 269
||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 183 cttcggctccccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcat 242
Query: 270 gaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgagat 329
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 243 gaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccaggagctcgagat 302
Query: 330 cgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgt 362
Query: 390 ccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctgaa 449
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 ccagtccagcaaggacccggagggcctccggatcttctactacctcgtccaggatctgaa 422
Query: 450 gtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatccagtcttgagc 509
|||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 423 gtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagc 482
Query: 510 tccatcccaagccttcatgtagctggtttgtgag 543
|||||||||||||||| |||| ||| ||| ||||
Sbjct: 483 tccatcccaagccttcgtgtaactgttttatgag 516
>gb|BE355440.1|BE355440 DG1_114_A04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 475
Score = 805 bits (406), Expect = 0.0
Identities = 462/481 (96%), Gaps = 6/481 (1%)
Strand = Plus / Plus
Query: 29 cggccggcggcgagaacagcggcgctggcgagggcgagggcgagttctacctgcgctact 88
||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct: 1 cggccggcggcgagaacagcggcgc------gggcgagggggagttctacctgcggtact 54
Query: 89 acgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgccccgacg 148
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 55 acgtgggtcacaagggcaagttcgggcacgagttcctcgagttcgagttccgccccgacg 114
Query: 149 gcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggagg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggagg 174
Query: 209 tcttcgtctcgccctccgtcctccgcgaggccaggaggatcatccaggagtccgacatca 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 175 tcttcgtctccccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatca 234
Query: 269 tgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgaga 328
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 235 tgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccaggagctcgaga 294
Query: 329 tcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatg 354
Query: 389 tccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctga 448
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 355 tccagtccagcaaggacccggagggcctccggatcttctactacctcgtccaggatctga 414
Query: 449 agtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatccagtcttgag 508
||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 agtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttgag 474
Query: 509 c 509
|
Sbjct: 475 c 475
>gb|CD223928.1|CD223928 CCC1_31_A02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_A02_A007 3', mRNA sequence
Length = 608
Score = 775 bits (391), Expect = 0.0
Identities = 433/447 (96%)
Strand = Plus / Plus
Query: 97 cacaagggcaagttcgggcacgagttcctcgagttcgagctccgccccgacggcaagctc 156
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 cacaagggcaagttcgggcacgagttcctcgagttcgagttccgccccgacggcaagctc 61
Query: 157 cgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggtcttcgtc 121
Query: 217 tcgccctccgtcctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggag 276
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 122 tccccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggag 181
Query: 277 gacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatg 336
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gacgatagcaactggcccgaacccgaccgcatcggccgccaggagctcgagatcgtcatg 241
Query: 337 ggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtcc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtcc 301
Query: 397 agcaaggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttc 456
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 302 agcaaggacccggagggcctccggatcttctactacctcgtccaggatctgaagtgtttt 361
Query: 457 gtgttctcgctcatcaaccttcacttcaagatcaagccaatccagtcttgagctccatcc 516
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtgttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcc 421
Query: 517 caagccttcatgtagctggtttgtgag 543
||||||||| |||| ||| ||| ||||
Sbjct: 422 caagccttcgtgtaactgttttatgag 448
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 543 tttgcatttggattgtgcaaactgctgagtagcagtga 580
>gb|BE125232.1|BE125232 DG1_16_A11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 771 bits (389), Expect = 0.0
Identities = 448/468 (95%), Gaps = 6/468 (1%)
Strand = Plus / Plus
Query: 14 ggaaatctatggcggcggccggcggcgagaacagcggcgctggcgagggcgagggcgagt 73
||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 42 ggaaatcgatggcggcggccggcggcgagaacagcggcgc------gggcgagggggagt 95
Query: 74 tctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcg 133
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 96 tctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagttcg 155
Query: 134 agctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 193
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 agttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 215
Query: 194 tgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatcc 253
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 216 tgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatcc 275
Query: 254 aggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggcc 313
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 276 aggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggcc 335
Query: 314 gccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcg 395
Query: 374 gctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacc 455
Query: 434 ttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcact 481
| |||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct: 456 tcgtccaggatctgaagtgttttgtgttttcactcatcaacctccact 503
>gb|BE125917.1|BE125917 DG1_59_E12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 731 bits (369), Expect = 0.0
Identities = 416/432 (96%), Gaps = 6/432 (1%)
Strand = Plus / Plus
Query: 14 ggaaatctatggcggcggccggcggcgagaacagcggcgctggcgagggcgagggcgagt 73
||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 67 ggaaatcgatggcggcggccggcggcgagaacagcggcgc------gggcgagggggagt 120
Query: 74 tctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcg 133
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagttcg 180
Query: 134 agctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 193
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 240
Query: 194 tgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatcc 253
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatcc 300
Query: 254 aggagtccgacatcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggcc 313
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 301 aggagtccgatatcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggcc 360
Query: 314 gccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcg 420
Query: 374 gctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacc 480
Query: 434 ttgtccaggatc 445
| ||||||||||
Sbjct: 481 tcgtccaggatc 492
>gb|CF759327.1|CF759327 DSAF1_43_G09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_43_G09_A011 5', mRNA sequence
Length = 388
Score = 686 bits (346), Expect = 0.0
Identities = 376/386 (97%)
Strand = Plus / Plus
Query: 55 ggcgagggcgagggcgagttctacctgcgctactacgtgggacacaagggcaagttcggg 114
|||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 3 ggcgcgggcgagggggagttctacctgcggtactacgtgggtcacaagggcaagttcggg 62
Query: 115 cacgagttcctcgagttcgagctccgccccgacggcaagctccgctacgccaacaactcc 174
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cacgagttcctcgagttcgagttccgccccgacggcaagctccgctacgccaacaactcc 122
Query: 175 aactacaagaacgacaccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgc 234
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 123 aactacaagaacgacaccatgatccgcaaggaggtcttcgtctccccctccgtcctccgc 182
Query: 235 gaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagcaactggccc 294
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 183 gaggccaggaggatcatccaggagtccgatatcatgaaggaggacgatagcaactggccc 242
Query: 295 gagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttca 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaacccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttca 302
Query: 355 ttcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggc 362
Query: 415 ctccggatcttctactaccttgtcca 440
|||||||||||||||||||| |||||
Sbjct: 363 ctccggatcttctactacctcgtcca 388
>gb|AW679953.1|AW679953 WS1_33_A07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 612
Score = 547 bits (276), Expect = e-154
Identities = 312/324 (96%)
Strand = Plus / Plus
Query: 220 ccctccgtcctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggac 279
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ccctccgtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggac 60
Query: 280 gacagcaactggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggc 339
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatagcaactggcccgaacccgaccgcatcggccgccaggagctcgagatcgtcatgggc 120
Query: 340 aacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagc 180
Query: 400 aaggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtg 459
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 181 aaggacccggagggcctccggatcttctactacctcgtccaggatctgaagtgttttgtg 240
Query: 460 ttctcgctcatcaaccttcacttcaagatcaagccaatccagtcttgagctccatcccaa 519
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcccaa 300
Query: 520 gccttcatgtagctggtttgtgag 543
|||||| |||| ||| ||| ||||
Sbjct: 301 gccttcgtgtaactgttttatgag 324
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 419 tttgcatttggattgtgcaaactgctgagtagcagtga 456
>gb|BE355521.1|BE355521 DG1_114_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 535 bits (270), Expect = e-150
Identities = 306/318 (96%)
Strand = Plus / Plus
Query: 226 gtcctccgcgaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagc 285
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1 gtcctccgcgaggccaggaggatcatccaggagtccgatatcatgaaggaggacgatagc 60
Query: 286 aactggcccgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgag 345
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactggcccgaacccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgag 120
Query: 346 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggac 180
Query: 406 ccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcg 465
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 181 ccggagggcctccggatcttctactacctcgtccaggatctgaagtgttttgtgttttca 240
Query: 466 ctcatcaaccttcacttcaagatcaagccaatccagtcttgagctccatcccaagccttc 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcccaagccttc 300
Query: 526 atgtagctggtttgtgag 543
|||| ||| ||| ||||
Sbjct: 301 gtgtaactgttttatgag 318
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 413 tttgcatttggattgtgcaaactgctgagtagcagtga 450
>gb|AW679913.1|AW679913 WS1_33_G08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 511 bits (258), Expect = e-143
Identities = 297/310 (95%)
Strand = Plus / Plus
Query: 234 cgaggccaggaggatcatccaggagtccgacatcatgaaggaggacgacagcaactggcc 293
|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1 cgaggccaggaggatcatccaggagtccgatatcatgaaggaggtcgatagcaactggcc 60
Query: 294 cgagcccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttc 353
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaacccgaccgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttc 120
Query: 354 attcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggacccggaggg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcaccacttccaagatcggctccctcgtcgatgtccagtccagcaaggacccggaggg 180
Query: 414 cctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaa 473
||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||
Sbjct: 181 cctccggatcttctactacctcgtccaggatctgaagtgttttgtgttttcactcatcaa 240
Query: 474 ccttcacttcaagatcaagccaatccagtcttgagctccatcccaagccttcatgtagct 533
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 241 cctccacttcaagatcaagccaatccagtcttgagctccatcccaagccttcgtgtaact 300
Query: 534 ggtttgtgag 543
| ||| ||||
Sbjct: 301 gttttatgag 310
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 405 tttgcatttggattgtgcaaactgctgagtagcagtga 442
>gb|AW746635.1|AW746635 WS1_54_B05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 404 bits (204), Expect = e-111
Identities = 231/240 (96%)
Strand = Plus / Plus
Query: 304 cgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccact 60
Query: 364 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatc 120
Query: 424 ttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttc 483
||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||
Sbjct: 121 ttctactacctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttc 180
Query: 484 aagatcaagccaatccagtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 181 aagatcaagccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgag 240
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 335 tttgcatttggattgtgcaaactgctgagtagcagtga 372
>gb|AW746704.1|AW746704 WS1_54_B05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 404 bits (204), Expect = e-111
Identities = 231/240 (96%)
Strand = Plus / Plus
Query: 304 cgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcatcggccgccaggagctcgagatcgtcatgggcaacgagcacatttcattcaccact 60
Query: 364 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccaagatcggctccctcgtcgatgtccagtccagcaaggacccggagggcctccggatc 120
Query: 424 ttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatcaaccttcacttc 483
||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||
Sbjct: 121 ttctactacctcgtccaggatctgaagtgttttgtgttttcactcatcaacctccacttc 180
Query: 484 aagatcaagccaatccagtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 181 aagatcaagccaatccagtcttgagctccatcccaagccttcgtgtaactgttttatgag 240
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 335 tttgcatttggattgtgcaaactgctgagtagcagtga 372
>gb|CW075942.1|CW075942 104_363_10809839_116_31801_287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809839, DNA
sequence
Length = 681
Score = 402 bits (203), Expect = e-110
Identities = 238/250 (95%), Gaps = 6/250 (2%)
Strand = Plus / Plus
Query: 14 ggaaatctatggcggcggccggcggcgagaacagcggcgctggcgagggcgagggcgagt 73
||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 234 ggaaatcgatggcggcggccggcggcgagaacagcggcgc------gggcgagggggagt 287
Query: 74 tctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcg 133
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 288 tctacctgcggtactacgtgggtcacaagggcaagttcgggcacgagttcctcgagttcg 347
Query: 134 agctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 193
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacgacacca 407
Query: 194 tgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatcc 253
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 408 tgatccgcaaggaggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatcc 467
Query: 254 aggagtccga 263
||||||||||
Sbjct: 468 aggagtccga 477
Score = 93.7 bits (47), Expect = 2e-017
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 265 atcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccagg 319
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 627 atcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccagg 681
>gb|CW075941.1|CW075941 104_363_10809839_114_31800_287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809839, DNA
sequence
Length = 705
Score = 329 bits (166), Expect = 2e-088
Identities = 175/178 (98%)
Strand = Plus / Minus
Query: 265 atcatgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctc 324
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 438 atcatgaaggaggacgatagcaactggcccgaacccgaccgcatcggccgccaggagctc 379
Query: 325 gagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtc 319
Query: 385 gatgtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccagg 442
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 318 gatgtccagtccagcaaggacccggagggcctccggatcttctactacctcgtccagg 261
Score = 226 bits (114), Expect = 2e-057
Identities = 117/118 (99%)
Strand = Plus / Minus
Query: 146 acggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaagg 646
Query: 206 aggtcttcgtctcgccctccgtcctccgcgaggccaggaggatcatccaggagtccga 263
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aggtcttcgtctccccctccgtcctccgcgaggccaggaggatcatccaggagtccga 588
>gb|AW923785.1|AW923785 DG1_59_E12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 350
Score = 329 bits (166), Expect = 2e-088
Identities = 193/202 (95%)
Strand = Plus / Plus
Query: 342 cgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccagtccagcaa 61
Query: 402 ggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgtt 461
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 62 ggacccggagggcctccggatcttctactacctcgtccaggatctgaagtgttttgtgtt 121
Query: 462 ctcgctcatcaaccttcacttcaagatcaagccaatccagtcttgagctccatcccaagc 521
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttcactcatcaacctccacttcaagatcaagccaatccagtcttgagctccatcccaagc 181
Query: 522 cttcatgtagctggtttgtgag 543
|||| |||| ||| ||| ||||
Sbjct: 182 cttcgtgtaactgttttatgag 203
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 298 tttgcatttggattgtgcaaactgctgagtagcagtga 335
>gb|CW447470.1|CW447470 fsbb001f180j18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180j18, DNA
sequence
Length = 715
Score = 299 bits (151), Expect = 2e-079
Identities = 184/195 (94%)
Strand = Plus / Plus
Query: 69 cgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcga 128
||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 304 cgagttctacctgcggtattacgtggggcacaagggcaagttcggccacgagttcctcga 363
Query: 129 gttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacga 188
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaacga 423
Query: 189 caccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggat 248
||||||||||||||||||||| |||||||| | ||||| |||||||||||| ||||||||
Sbjct: 424 caccatgatccgcaaggaggtgttcgtctcccgctccgccctccgcgaggcgaggaggat 483
Query: 249 catccaggagtccga 263
||||||| |||||||
Sbjct: 484 catccagcagtccga 498
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||| |||||| ||||| ||||||||||||||| || ||| ||| | |||||||||||
Sbjct: 640 atgagggaggatgacagaaactggcccgagcccaactacattggcaggcaggagctcgaa 699
Query: 328 atcgtcatgggcaa 341
||||| ||||||||
Sbjct: 700 atcgttatgggcaa 713
>gb|CW447469.1|CW447469 fsbb001f180j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180j18, DNA
sequence
Length = 714
Score = 291 bits (147), Expect = 4e-077
Identities = 183/195 (93%)
Strand = Plus / Minus
Query: 69 cgagttctacctgcgctactacgtgggacacaagggcaagttcgggcacgagttcctcga 128
||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 677 cgagttctacctgcggtattacgtggggcacaagggcaagttcggccacgagttcctcga 618
Query: 129 gttcgagctccgccccgacggcaagctccgctacgccaacaactccaactacaagaacga 188
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 gttcgagttccgccccgacggcaagctccggtacgccaacaactccaactacaagaacga 558
Query: 189 caccatgatccgcaaggaggtcttcgtctcgccctccgtcctccgcgaggccaggaggat 248
||||||||||||||||||||| |||||||| | ||||| |||||||||||| ||||||||
Sbjct: 557 caccatgatccgcaaggaggtgttcgtctcccgctccgccctccgcgaggcgaggaggat 498
Query: 249 catccaggagtccga 263
||||||| |||||||
Sbjct: 497 catccagcagtccga 483
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||| |||||| ||||| ||||||||||||||| || ||| ||| | |||||||||||
Sbjct: 341 atgagggaggatgacagaaactggcccgagcccaactacattggcaggcaggagctcgaa 282
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
||||| |||||||| |||||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct: 281 atcgttatgggcaatgagcacatctcattcaccacctccaagattggatcccttgtcgat 222
Query: 388 gt 389
||
Sbjct: 221 gt 220
>gb|CW190163.1|CW190163 104_611_11174356_148_36747_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174356, DNA
sequence
Length = 724
Score = 145 bits (73), Expect = 6e-033
Identities = 97/105 (92%)
Strand = Plus / Minus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 136 caggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatc 77
Query: 499 cagtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
||||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 76 cagtcttgagctccatcccaagccttcgtgtaactgttttatgag 32
>gb|CW486870.1|CW486870 fsbb001f252g09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252g09, DNA
sequence
Length = 661
Score = 145 bits (73), Expect = 6e-033
Identities = 97/105 (92%)
Strand = Plus / Plus
Query: 439 caggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatc 498
||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||
Sbjct: 352 caggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatc 411
Query: 499 cagtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
||||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 412 cagtcttgagctccatcccaagccttcgtgtaactgttttatgag 456
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 551 tttgcatttggattgtgcaaactgctgagtagcagtga 588
>gb|CW420516.1|CW420516 fsbb001f126n23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f126n23, DNA
sequence
Length = 796
Score = 143 bits (72), Expect = 3e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 440 aggatctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatcc 499
|||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 796 aggatctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatcc 737
Query: 500 agtcttgagctccatcccaagccttcatgtagctggtttgtgag 543
|||||||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 736 agtcttgagctccatcccaagccttcgtgtaactgttttatgag 693
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 598 tttgcatttggattgtgcaaactgctgagtagcagtga 561
>gb|AW681134.1|AW681134 WS1_9_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 371
Score = 133 bits (67), Expect = 2e-029
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 445 ctgaagtgtttcgtgttctcgctcatcaaccttcacttcaagatcaagccaatccagtct 504
||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctgaagtgttttgtgttttcactcatcaacctccacttcaagatcaagccaatccagtct 60
Query: 505 tgagctccatcccaagccttcatgtagctggtttgtgag 543
||||||||||||||||||||| |||| ||| ||| ||||
Sbjct: 61 tgagctccatcccaagccttcgtgtaactgttttatgag 99
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 655 tttgcatttgttttgtgcaaactgctgagtagtagtga 692
|||||||||| |||||||||||||||||||| |||||
Sbjct: 194 tttgcatttggattgtgcaaactgctgagtagcagtga 231
>gb|CW269999.1|CW269999 104_741_11402153_116_35324_073 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11402153, DNA sequence
Length = 702
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 ggaaatctatggcggcggccggcggcga 41
||||||| ||||||||||||||||||||
Sbjct: 28 ggaaatcgatggcggcggccggcggcga 1
>gb|CW486871.1|CW486871 fsbb001f252g09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252g09, DNA
sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 655 tttgcatttgttttgtgcaaactgctgagta 685
|||||||||| |||||||||||||||||||
Sbjct: 656 tttgcatttggattgtgcaaactgctgagta 626
>gb|CW325724.1|CW325724 104_820_11477841_116_35929_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477841, DNA
sequence
Length = 607
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 499 atggcggcggccggcggcgaga 478
>gb|CW325725.1|CW325725 104_820_11477841_148_35928_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477841, DNA
sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 atggcggcggccggcggcgaga 43
||||||||||||||||||||||
Sbjct: 387 atggcggcggccggcggcgaga 408
>gb|CW248252.1|CW248252 104_709_11222200_116_35032_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222200, DNA
sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgagaa 44
|||||||||||||||||||||
Sbjct: 582 ggcggcggccggcggcgagaa 602
>gb|CW248253.1|CW248253 104_709_11222200_148_35028_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222200, DNA
sequence
Length = 723
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 ggcggcggccggcggcgagaa 44
|||||||||||||||||||||
Sbjct: 276 ggcggcggccggcggcgagaa 256
>gb|CW304322.1|CW304322 104_789_11465721_148_35705_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465721, DNA
sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgag 42
|||||||||||||||||||||
Sbjct: 553 atggcggcggccggcggcgag 533
>gb|CW408435.1|CW408435 fsbb001f102f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102f07, DNA
sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 48 cggcgctggcgagggcgagggcgag 72
|||||| ||||||||||||||||||
Sbjct: 298 cggcgccggcgagggcgagggcgag 274
>gb|CW408436.1|CW408436 fsbb001f102f07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102f07, DNA
sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 cggcgctggcgagggcgagggcgag 72
|||||| ||||||||||||||||||
Sbjct: 571 cggcgccggcgagggcgagggcgag 595
>gb|CW415016.1|CW415016 fsbb001f114o22f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f114o22, DNA
sequence
Length = 547
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 atggcggcggccggcggcgag 42
|||||||||||||||||||||
Sbjct: 16 atggcggcggccggcggcgag 36
>gb|CW500187.1|CW500187 fsbb001f295g02f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f295g02, DNA
sequence
Length = 179
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 atggcggcggccggcggcgag 42
|||||||||||||||||||||
Sbjct: 28 atggcggcggccggcggcgag 8
>gb|CW439495.1|CW439495 fsbb001f157k19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157k19, DNA
sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tatggcggcggccggcggcg 40
||||||||||||||||||||
Sbjct: 166 tatggcggcggccggcggcg 185
>gb|BG739620.1|BG739620 EM1_73_B01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 380
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 gcggcgctggcgagggcgagggcg 70
|||||| |||||||||||||||||
Sbjct: 141 gcggcgatggcgagggcgagggcg 164
>gb|CD422914.1|CD422914 SA1_38_E10.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_38_E10_A002 5', mRNA sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ggcggcggccggcggcgaga 43
||||||||||||||||||||
Sbjct: 303 ggcggcggccggcggcgaga 322
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,236
Number of Sequences: 832831
Number of extensions: 228236
Number of successful extensions: 70516
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70431
Number of HSP's gapped (non-prelim): 83
length of query: 712
length of database: 491,359,669
effective HSP length: 20
effective length of query: 692
effective length of database: 474,703,049
effective search space: 328494509908
effective search space used: 328494509908
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)