BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.4
(667 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (... 630 e-179
gb|BG412467.1|BG412467 OV2_34_E11.g1_A002 Ovary 2 (OV2) Sor... 628 e-178
gb|CW319522.1|CW319522 104_812_11474531_148_35892_046 Sorgh... 569 e-160
gb|CX621309.1|CX621309 GABR1_57_H04.b1_A002 GA- or brassino... 527 e-148
gb|CD461570.1|CD461570 SA1_33_E06.b1_A002 Salicylic acid-tr... 422 e-116
gb|CF428687.1|CF428687 PH1_17_F11.b1_A002 Phosphorous-defic... 404 e-111
gb|BF421749.1|BF421749 FM1_16_B07.g1_A003 Floral-Induced Me... 400 e-110
gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassino... 361 5e-098
gb|CX617979.1|CX617979 GABR1_37_B05.b1_A002 GA- or brassino... 351 5e-095
gb|BE919029.1|BE919029 FM1_3_B10.g1_A003 Floral-Induced Mer... 319 2e-085
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 309 2e-082
gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Me... 309 2e-082
gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle... 309 2e-082
gb|BI099615.1|BI099615 IP1_44_E03.g1_A002 Immature pannicle... 293 1e-077
gb|BF421657.1|BF421657 FM1_10_G10.g1_A003 Floral-Induced Me... 285 3e-075
gb|CF757235.1|CF757235 DSAF1_15_D07.g1_A011 Drought-stresse... 266 2e-069
gb|CW319521.1|CW319521 104_812_11474531_116_35888_046 Sorgh... 254 9e-066
gb|CD425235.1|CD425235 SA1_11_F01.b1_A002 Salicylic acid-tr... 254 9e-066
gb|CD230894.1|CD230894 SS1_20_G01.b1_A012 Salt-stressed see... 186 2e-045
gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Me... 178 4e-043
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 170 1e-040
gb|BG947178.1|BG947178 IP1_3_E01.g1_A002 Immature pannicle ... 167 2e-039
gb|BF585899.1|BF585899 FM1_25_H06.g1_A003 Floral-Induced Me... 165 6e-039
gb|AW680151.1|AW680151 WS1_4_E04.g1_A002 Water-stressed 1 (... 161 1e-037
gb|BG051468.1|BG051468 FM1_56_H02.g1_A003 Floral-Induced Me... 161 1e-037
gb|BG948207.1|BG948207 IP1_10_F08.g1_A002 Immature pannicle... 161 1e-037
gb|CF432975.1|CF432975 NIT1_20_E12.b1_A002 Nitrogen-deficie... 161 1e-037
gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stres... 153 2e-035
gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Me... 147 2e-033
gb|AW671807.1|AW671807 LG1_351_D02.g1_A002 Light Grown 1 (L... 141 9e-032
gb|BG051983.1|BG051983 RHIZ2_7_D11.g1_A003 Rhizome2 (RHIZ2)... 127 1e-027
gb|BG241543.1|BG241543 RHIZ2_51_H04.g1_A003 Rhizome2 (RHIZ2... 125 6e-027
gb|BG241497.1|BG241497 RHIZ2_50_A08.g1_A003 Rhizome2 (RHIZ2... 111 8e-023
gb|BE126049.1|BE126049 DG1_65_G07.b1_A002 Dark Grown 1 (DG1... 103 2e-020
gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seed... 88 1e-015
gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stress... 86 5e-015
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 80 3e-013
gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (L... 80 3e-013
gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced ... 80 3e-013
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 80 3e-013
gb|BM331086.1|BM331086 PIC1_69_D12.g1_A002 Pathogen-infecte... 72 7e-011
gb|BM331095.1|BM331095 PIC1_69_E12.g1_A002 Pathogen-infecte... 72 7e-011
gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient se... 72 7e-011
gb|BM331336.1|BM331336 PIC1_64_G10.g1_A002 Pathogen-infecte... 68 1e-009
gb|CN152146.1|CN152146 WOUND1_80_C12.b1_A002 Wounded leaves... 68 1e-009
gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorgh... 66 4e-009
gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorgh... 66 4e-009
gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum m... 66 4e-009
gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorgh... 66 4e-009
gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorgh... 66 4e-009
gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorgh... 66 4e-009
gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation... 66 4e-009
gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG... 66 4e-009
gb|BF420934.1|BF420934 FM1_5_B03.g1_A003 Floral-Induced Mer... 66 4e-009
gb|CD423780.1|CD423780 SA1_1_G10.b1_A002 Salicylic acid-tre... 66 4e-009
gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-defic... 66 4e-009
gb|CF433456.1|CF433456 NIT1_27_E11.b1_A002 Nitrogen-deficie... 66 4e-009
gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) So... 62 7e-008
gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle... 62 7e-008
gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient se... 62 7e-008
gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkal... 62 7e-008
gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkal... 62 7e-008
gb|BF585666.1|BF585666 FM1_24_B07.g1_A003 Floral-Induced Me... 60 3e-007
gb|BG465904.1|BG465904 RHIZ2_46_A10.g1_A003 Rhizome2 (RHIZ2... 60 3e-007
gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorgh... 54 2e-005
gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation... 54 2e-005
gb|BE917989.1|BE917989 OV1_8_E09.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BF317768.1|BF317768 OV1_9_B10.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BF655935.1|BF655935 FM1_42_G12.g1_A003 Floral-Induced Me... 54 2e-005
gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2... 54 2e-005
gb|BI074880.1|BI074880 IP1_17_A09.g1_A002 Immature pannicle... 54 2e-005
gb|CD219969.1|CD219969 CCC1_60_F06.b1_A007 Callus culture/c... 54 2e-005
gb|CD233339.1|CD233339 SS1_13_G11.b1_A012 Salt-stressed see... 54 2e-005
gb|CF433645.1|CF433645 NIT1_28_F11.b1_A002 Nitrogen-deficie... 54 2e-005
gb|CF771740.1|CF771740 DSBF1_23_E06.g1_A010 Drought-stresse... 54 2e-005
gb|CN129665.1|CN129665 RHOH1_36_E05.g1_A002 Acid- and alkal... 54 2e-005
gb|BF481629.1|BF481629 FM1_20_D08.g1_A003 Floral-Induced Me... 52 7e-005
gb|BF586500.1|BF586500 FM1_29_A05.g1_A003 Floral-Induced Me... 52 7e-005
gb|BG239994.1|BG239994 OV1_31_F08.g1_A002 Ovary 1 (OV1) Sor... 52 7e-005
gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sor... 52 7e-005
gb|CD213045.1|CD213045 HS1_28_B08.b1_A012 Heat-shocked seed... 52 7e-005
gb|CD227828.1|CD227828 CCC1_56_G02.b1_A007 Callus culture/c... 52 7e-005
gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots ... 52 7e-005
gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorgh... 50 3e-004
gb|CD227257.1|CD227257 CCC1_50_D12.b1_A007 Callus culture/c... 50 3e-004
gb|CF073545.1|CF073545 FE1_10_F02.g1_A002 Iron-deficient se... 48 0.001
gb|BE355115.1|BE355115 DG1_113_C09.g1_A002 Dark Grown 1 (DG... 46 0.004
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 46 0.004
gb|BE362694.1|BE362694 DG1_88_F12.g1_A002 Dark Grown 1 (DG1... 44 0.016
gb|BE918278.1|BE918278 OV1_1_D06.g1_A002 Ovary 1 (OV1) Sorg... 44 0.016
gb|BE918322.1|BE918322 OV1_2_A10.g1_A002 Ovary 1 (OV1) Sorg... 44 0.016
gb|BF481487.1|BF481487 FM1_19_G05.g1_A003 Floral-Induced Me... 44 0.016
gb|BG103120.1|BG103120 RHIZ2_18_D07.g1_A003 Rhizome2 (RHIZ2... 44 0.016
gb|BG103164.1|BG103164 RHIZ2_18_H12.g1_A003 Rhizome2 (RHIZ2... 44 0.016
gb|CF072531.1|CF072531 FE1_3_B12.b1_A002 Iron-deficient see... 44 0.016
gb|BF585894.1|BF585894 FM1_25_H01.g1_A003 Floral-Induced Me... 42 0.064
gb|CN129574.1|CN129574 RHOH1_36_E05.b3_A002 Acid- and alkal... 42 0.064
gb|CN132797.1|CN132797 OX1_8_F12.b1_A002 Oxidatively-stress... 42 0.064
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 42 0.064
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.064
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.064
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.25
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.25
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.25
>gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 630 bits (318), Expect = e-179
Identities = 431/463 (93%), Gaps = 8/463 (1%)
Strand = Plus / Plus
Query: 41 tttgctcctattgaacttcattggtgtggtcgctggtgtttccaatgcaatcaataatgg 100
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 1 tttgctcctattgaacttcattggtgtggttgctggtgtttccaacgcaatcaataacgg 60
Query: 101 atacgagtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtcca 160
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 atatgagtcatggggtcccctctttgggaagctcttctttgcattttgggtgattgtcca 120
Query: 161 tctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcat 220
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 121 tctgtatcccttcctcaaaggtttggttggaaggcaaaacaggacaccaacaattgtcat 180
Query: 221 cgtctggtccatcctgctggcttcaatcttctcactcctttgggttcggattgacccttt 280
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 cgtgtggtccattctgctggcttcaatcttctcactcctttgggttcggattgatccttt 240
Query: 281 ccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaactaggggat 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 ccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaacta--ggat 298
Query: 341 gtcagcacatcagctcccccaatcagcgtatgatt---gaagtatttttgccggcgtttg 397
||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||
Sbjct: 299 gtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtgtttg 358
Query: 398 tccccatatttacagtg-cccctctgtaggtaagagacaagaaatgtctcccgttccttt 456
|||||||||||||| || ||||||||||| |||||||| ||||||||| ||| ||||
Sbjct: 359 tccccatatttacaatgtcccctctgtagataagagac-cgaaatgtcttgtgtttcttt 417
Query: 457 tgatccatggt-gaacctcgacctaatatctgggatacactgg 498
||||||||||| ||||||| |||||||||||| |||| |||||
Sbjct: 418 tgatccatggtggaacctcaacctaatatctgagatatactgg 460
>gb|BG412467.1|BG412467 OV2_34_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 671
Score = 628 bits (317), Expect = e-178
Identities = 478/524 (91%), Gaps = 17/524 (3%)
Strand = Plus / Plus
Query: 137 ctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggca 196
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 ctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggaaggca 60
Query: 197 aaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcact 256
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 61 aaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttctcact 120
Query: 257 cctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtg 316
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgaggagtg 180
Query: 317 tggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatgatt- 375
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct: 181 tggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatgcttg 238
Query: 376 --gaagtatttttgccggcgtttgtccccatatttacagtg-cccctctgtaggtaagag 432
|||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 239 aagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataagag 298
Query: 433 acaagaaatgtctcccgttccttttgatccatggt-gaacctcgacctaatatctgggat 491
|| ||||||||| ||| ||||||||||||||| ||||||| |||||||||||| |||
Sbjct: 299 ac-cgaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatatctgagat 357
Query: 492 acactggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagc 551
| |||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 358 atactg--gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagc 415
Query: 552 atatgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctg 607
||||| ||||||||||||||||||||||||| |||||| ||||| |||||| ||
Sbjct: 416 atatg---gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtg 472
Query: 608 agccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
|||||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 473 agccgaacagtaaggtgttttgattctgcactgctcccgtgtac 516
>gb|CW319522.1|CW319522 104_812_11474531_148_35892_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474531, DNA
sequence
Length = 715
Score = 569 bits (287), Expect = e-160
Identities = 448/494 (90%), Gaps = 17/494 (3%)
Strand = Plus / Plus
Query: 167 tcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctg 226
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 1 tcccttcctcaaaggtttggttggaaggcaaaacaggacaccaacaattgtcatcgtgtg 60
Query: 227 gtccatcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgc 286
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gtccattctgctggcttcaatcttctcactcctttgggttcggattgatcctttccttgc 120
Query: 287 aaaggatgatggtccacttcttgaggagtgtggtttggattgcaactaggggatgtcagc 346
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 aaaggatgatggtccacttcttgaggagtgtggtttggattgcaacta--ggatgtcagc 178
Query: 347 acatcagctcccccaatcagcgtatgatt---gaagtatttttgccggcgtttgtcccca 403
||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||
Sbjct: 179 acatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtgtttgtcccca 238
Query: 404 tatttacagtg-cccctctgtaggtaagagacaagaaatgtctcccgttccttttgatcc 462
|||||||| || ||||||||||| |||||||| ||||||||| ||| ||||||||||
Sbjct: 239 tatttacaatgtcccctctgtagataagagac-cgaaatgtcttgtgtttcttttgatcc 297
Query: 463 atggt-gaacctcgacctaatatctgggatacactggagggaaaatggaggctgcggcaa 521
||||| ||||||| |||||||||||| |||| |||| |||| |||||||||||||||||
Sbjct: 298 atggtggaacctcaacctaatatctgagatatactg--gggagaatggaggctgcggcaa 355
Query: 522 tccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgtgcagcattct 581
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 356 tgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgtgcagcattct 412
Query: 582 tta----ttgggcgcaaaactgatcgtctgagccgagcagcaaggtattttgatcctgca 637
||| |||||| ||||| |||||| |||||||| ||| ||||| ||||||| |||||
Sbjct: 413 ttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgattctgca 472
Query: 638 ctgctcccgtgtac 651
||||||||||||||
Sbjct: 473 ctgctcccgtgtac 486
>gb|CX621309.1|CX621309 GABR1_57_H04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_H04_A002 3', mRNA sequence
Length = 708
Score = 527 bits (266), Expect = e-148
Identities = 424/469 (90%), Gaps = 17/469 (3%)
Strand = Plus / Plus
Query: 192 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 251
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 2 aggcaaaacaggacaccaacaattgtcatcgtgtggtccattctgctggcttcaatcttc 61
Query: 252 tcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgag 311
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcactcctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgag 121
Query: 312 gagtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtat 371
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 122 gagtgtggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatat 179
Query: 372 gatt---gaagtatttttgccggcgtttgtccccatatttacagtg-cccctctgtaggt 427
| || |||||||||||||||| ||||||||||||||||||| || ||||||||||| |
Sbjct: 180 gcttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagat 239
Query: 428 aagagacaagaaatgtctcccgttccttttgatccatggt-gaacctcgacctaatatct 486
||||||| ||||||||| ||| ||||||||||||||| ||||||| |||||||||||
Sbjct: 240 aagagac-cgaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatatct 298
Query: 487 gggatacactggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaat 546
| |||| |||| |||| |||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 299 gagatatactg--gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaat 356
Query: 547 acagcatatgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatc 602
|||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct: 357 acagcatatg---gtgtttgattgtgcagcattctttattacttgggcacaaaattgatc 413
Query: 603 gtctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
| |||||||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 414 gggtgagccgaacagtaaggtgttttgattctgcactgctcccgtgtac 462
>gb|CD461570.1|CD461570 SA1_33_E06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_33_E06_A002 3', mRNA sequence
Length = 622
Score = 422 bits (213), Expect = e-116
Identities = 365/408 (89%), Gaps = 17/408 (4%)
Strand = Plus / Plus
Query: 253 cactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgagg 312
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactcctttgggttcggattgatcctttccttgcaaaggatgatggtccacttcttgagg 60
Query: 313 agtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatg 372
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 61 agtgtggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatg 118
Query: 373 att---gaagtatttttgccggcgtttgtccccatatttacagtg-cccctctgtaggta 428
|| |||||||||||||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct: 119 cttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagata 178
Query: 429 agagacaagaaatgtctcccgttccttttgatccatggt-gaacctcgacctaatatctg 487
|||||| ||||||||| ||| ||||||||||||||| ||||||| ||||||||||||
Sbjct: 179 agagac-cgaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatatctg 237
Query: 488 ggatacactggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaata 547
|||| |||| |||| |||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 238 agatatactg--gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaata 295
Query: 548 cagcatatgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcg 603
||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct: 296 cagcatatg---gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcg 352
Query: 604 tctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
|||||||| ||| ||||| ||||||| ||||||||||||||||||
Sbjct: 353 ggtgagccgaacagtaaggtgttttgattttgcactgctcccgtgtac 400
>gb|CF428687.1|CF428687 PH1_17_F11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_17_F11_A002 3', mRNA sequence
Length = 617
Score = 404 bits (204), Expect = e-111
Identities = 359/403 (89%), Gaps = 17/403 (4%)
Strand = Plus / Plus
Query: 258 ctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgt 317
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgggttcgggttgatcctttccttgcaaaggatgatggtccacttcttgaggagtgt 60
Query: 318 ggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgtatgatt-- 375
||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct: 61 ggtttggattgcaacta--ggatgtcagcacatcagctcccccaatcagcatatgcttga 118
Query: 376 -gaagtatttttgccggcgtttgtccccatatttacagt-gcccctctgtaggtaagaga 433
|||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 119 agaagtatttttgccggtgtttgtccccatatttacaatatcccctctgtagataagaga 178
Query: 434 caagaaatgtctcccgttccttttgatccatggt-gaacctcgacctaatatctgggata 492
| ||||||||| ||| ||||||||||||||| ||||||| |||||||||||| ||||
Sbjct: 179 c-cgaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatatctgagata 237
Query: 493 cactggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagca 552
|||| |||| |||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 238 tactg--gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagca 295
Query: 553 tatgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctga 608
|||| ||||||||||||||||||||||||| |||||| ||||| |||||| |||
Sbjct: 296 tatg---gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtga 352
Query: 609 gccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
||||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 353 gccgaacagtaaggtgttttgattctgcactgctcccgtgtac 395
>gb|BF421749.1|BF421749 FM1_16_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 495
Score = 400 bits (202), Expect = e-110
Identities = 351/393 (89%), Gaps = 17/393 (4%)
Strand = Plus / Plus
Query: 268 ggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggatt 327
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattgatcctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggatt 60
Query: 328 gcaactaggggatgtcagcacatcagctcccccaatcagcgtatgatt---gaagtattt 384
||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 61 gcaacta--ggatgtcagcacatcagctcccccaatcagcatatgcttgaagaagtattt 118
Query: 385 ttgccggcgtttgtccccatatttacagtg-cccctctgtaggtaagagacaagaaatgt 443
||||||| ||||||||||||||||||| || | ||||||||| |||||||| |||||||
Sbjct: 119 ttgccggtgtttgtccccatatttacaatgtcgcctctgtagataagagac-cgaaatgt 177
Query: 444 ctcccgttccttttgatccatggt-gaacctcgacctaatatctgggatacactggaggg 502
|| |||| ||||||||||||||| ||||||| |||||||||||| |||| |||| |||
Sbjct: 178 cttgcgtttcttttgatccatggtggaacctcaacctaatatctgagatatactg--ggg 235
Query: 503 aaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtg 562
| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct: 236 agaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtg 292
Query: 563 tttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagcagc 618
|||||||||||||||||||||| |||||| ||||| |||||| |||||||| |||
Sbjct: 293 tttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaacagt 352
Query: 619 aaggtattttgatcctgcactgctcccgtgtac 651
||||| ||||||| |||||||||||||||||||
Sbjct: 353 aaggtgttttgattctgcactgctcccgtgtac 385
>gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 5', mRNA sequence
Length = 728
Score = 361 bits (182), Expect = 5e-098
Identities = 209/218 (95%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acattcaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 570
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 571 ggtgtggttgctggtgtttccaacgcaatcaataacggatatgagtcatggggtcccctc 630
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tttgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 690
Query: 183 ttggttgggaggcaaaacaggacaccgacaattgtcat 220
|||||||| ||||||||||||||||| |||||||||||
Sbjct: 691 ttggttggaaggcaaaacaggacaccaacaattgtcat 728
>gb|CX617979.1|CX617979 GABR1_37_B05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 3', mRNA sequence
Length = 606
Score = 351 bits (177), Expect = 5e-095
Identities = 338/384 (88%), Gaps = 17/384 (4%)
Strand = Plus / Plus
Query: 277 ctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaactagg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 ctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaatta-- 58
Query: 337 ggatgtcagcacatcagctcccccaatcagcgtatgatt---gaagtatttttgccggcg 393
||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |
Sbjct: 59 ggatgtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtg 118
Query: 394 tttgtccccatatttacagtg-cccctctgtaggtaagagacaagaaatgtctcccgttc 452
|||||||||||||||||| || ||||||||||| |||||||| ||||||||| |||
Sbjct: 119 tttgtccccatatttacaatgtcccctctgtagataagagac-cgaaatgtcttgtgttt 177
Query: 453 cttttgatcca-tggtgaacctcgacctaatatctgggatacactggagggaaaatggag 511
||||||||||| || ||||||| ||||||||| || |||| |||| |||| |||||||
Sbjct: 178 cttttgatccaggggggaacctcaacctaatatttgagatatactg--gggagaatggag 235
Query: 512 gctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgt 571
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 236 gctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgt 292
Query: 572 gcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagcagcaaggtattt 627
||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||| |||
Sbjct: 293 gcagcattctttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttt 352
Query: 628 tgatcctgcactgctcccgtgtac 651
|||| ||||||||||||||||||
Sbjct: 353 tgattttgcactgctcccgtgtac 376
>gb|BE919029.1|BE919029 FM1_3_B10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 643
Score = 319 bits (161), Expect = 2e-085
Identities = 309/351 (88%), Gaps = 17/351 (4%)
Strand = Plus / Plus
Query: 310 aggagtgtggtttggattgcaactaggggatgtcagcacatcagctcccccaatcagcgt 369
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 1 aggagtgtggtttggattgcaantagg--atgtcagcacatcagctcccccaatcagcat 58
Query: 370 atgattgaag---tatttttgccggcgtttgtccccatatttacagtg-cccctctgtag 425
||| |||||| |||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct: 59 atgcttgaagaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtag 118
Query: 426 gtaagagacaagaaatgtctcccgttccttttgatccatggtg-aacctcgacctaatat 484
|||||||| ||||||||| ||| |||||||||||||||| |||||| |||||||||
Sbjct: 119 ataagagacc-gaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatat 177
Query: 485 ctgggatacactggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtgga 544
||| |||| ||||| ||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct: 178 ctgagatatactgg--ggagaatggaggctgcggcaatgcttgtgcagttgggccgtgga 235
Query: 545 atacagcatatgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactga 600
|||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 236 atacagcatatg---gtgtttgattgtgcagcattctttattacttgggcacaaaattga 292
Query: 601 tcgtctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
||| |||||||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 293 tcgggtgagccgaacagtaaggtgttttgattctgcactgctcccgtgtac 343
>gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 721
Score = 309 bits (156), Expect = 2e-082
Identities = 291/336 (86%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 262 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 321
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
|||| || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||
Sbjct: 322 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 381
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
| ||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 382 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaagg 441
Query: 181 gtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctgg 240
|| ||||||||||||| ||||| || || ||||||||||| |||||||||||||| |||
Sbjct: 442 gtctggttgggaggcagaacagaacgccaacaattgtcattgtctggtccatcctcttgg 501
Query: 241 cttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtc 300
||||||||||||| || || ||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 502 cttcaatcttctcgctgctctgggtccggatagatcctttccttgcgaaggatgatggtc 561
Query: 301 cacttcttgaggagtgtggtttggattgcaactagg 336
| || | ||||| || |||||||||||||||||||
Sbjct: 562 ccctgttggaggaatgcggtttggattgcaactagg 597
>gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 412
Score = 309 bits (156), Expect = 2e-082
Identities = 291/336 (86%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 59 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 118
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
|||| || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||
Sbjct: 119 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 178
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
| ||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 179 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaagg 238
Query: 181 gtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctgg 240
|| ||||||||||||| ||||| || || ||||||||||| |||||||||||||| |||
Sbjct: 239 gtctggttgggaggcagaacagaacgccaacaattgtcattgtctggtccatcctcttgg 298
Query: 241 cttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtc 300
||||||||||||| || || ||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 299 cttcaatcttctcgctgctctgggtccggatagatcctttccttgcgaaggatgatggtc 358
Query: 301 cacttcttgaggagtgtggtttggattgcaactagg 336
| || | ||||| || |||||||||||||||||||
Sbjct: 359 ccctgttggaggaatgcggtttggattgcaactagg 394
>gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 309 bits (156), Expect = 2e-082
Identities = 291/336 (86%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 47 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 106
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
|||| || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||
Sbjct: 107 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 166
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
| ||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 167 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaagg 226
Query: 181 gtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctgg 240
|| ||||||||||||| ||||| || || ||||||||||| |||||||||||||| |||
Sbjct: 227 gtctggttgggaggcagaacagaacgccaacaattgtcattgtctggtccatcctcttgg 286
Query: 241 cttcaatcttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtc 300
||||||||||||| || || ||||| ||||| || ||||||||||| |||||||||||||
Sbjct: 287 cttcaatcttctcgctgctctgggtccggatagatcctttccttgcgaaggatgatggtc 346
Query: 301 cacttcttgaggagtgtggtttggattgcaactagg 336
| || | ||||| || |||||||||||||||||||
Sbjct: 347 ccctgttggaggaatgcggtttggattgcaactagg 382
>gb|BI099615.1|BI099615 IP1_44_E03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 293 bits (148), Expect = 1e-077
Identities = 285/324 (87%), Gaps = 15/324 (4%)
Strand = Plus / Plus
Query: 337 ggatgtcagcacatcagctcccccaatcagcgtatgattgaag---tatttttgccggcg 393
||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |
Sbjct: 3 ggatgtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtg 62
Query: 394 tttgtccccatatttacagtg-cccctctgtaggtaagagacaagaaatgtctcccgttc 452
|||||||||||||||||| || ||||||||||| |||||||| ||||||||| |||
Sbjct: 63 tttgtccccatatttacaatgtcccctctgtagataagagacc-gaaatgtcttgtgttt 121
Query: 453 cttttgatccatggtg-aacctcgacctaatatctgggatacactggagggaaaatggag 511
|||||||||||||||| |||||| |||||||||||| |||| ||||| ||| |||||||
Sbjct: 122 cttttgatccatggtggaacctcaacctaatatctgagatatactgg--ggagaatggag 179
Query: 512 gctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgt 571
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 180 gctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgt 236
Query: 572 gcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagcagcaaggtattt 627
||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||| |||
Sbjct: 237 gcagcattctttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttt 296
Query: 628 tgatcctgcactgctcccgtgtac 651
|||| |||||||||||||||||||
Sbjct: 297 tgattctgcactgctcccgtgtac 320
>gb|BF421657.1|BF421657 FM1_10_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 597
Score = 285 bits (144), Expect = 3e-075
Identities = 281/320 (87%), Gaps = 15/320 (4%)
Strand = Plus / Plus
Query: 341 gtcagcacatcagctcccccaatcagcgtatgattgaag---tatttttgccggcgtttg 397
||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||
Sbjct: 1 gtcagcacatcagctcccccaatcagcatatgcttgaagaagtatttttgccggtgtttg 60
Query: 398 tccccatatttacagtgcc-cctctgtaggtaagagacaagaaatgtctcccgttccttt 456
|||||||||||||| || | ||||||||| |||||||| ||||||||| |||| ||||
Sbjct: 61 tccccatatttacaatgtcgcctctgtagataagagacc-gaaatgtcttgcgtttcttt 119
Query: 457 tgatccatggtg-aacctcgacctaatatctgggatacactggagggaaaatggaggctg 515
|||||||||||| |||||| |||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 120 tgatccatggtggaacctcaacctaatatctgagatatactgg--ggagaatggaggctg 177
Query: 516 cggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgtgcag 575
||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 178 cggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgtgcag 234
Query: 576 cattcttta----ttgggcgcaaaactgatcgtctgagccgagcagcaaggtattttgat 631
||||||||| |||||| ||||| |||||| |||||||| ||| ||||| |||||||
Sbjct: 235 cattctttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttttgat 294
Query: 632 cctgcactgctcccgtgtac 651
|||||||||||||||||||
Sbjct: 295 tctgcactgctcccgtgtac 314
>gb|CF757235.1|CF757235 DSAF1_15_D07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_15_D07_A011 3', mRNA sequence
Length = 393
Score = 266 bits (134), Expect = 2e-069
Identities = 227/258 (87%)
Strand = Plus / Plus
Query: 79 tttccaatgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttct 138
|||||||||||||||| |||||||| || |||||||||||||| ||||||||||| || |
Sbjct: 1 tttccaatgcaatcaacaatggatatgaatcatggggccccctgttcgggaagctttttt 60
Query: 139 ttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaa 198
||||||||||||||||||||||||| || || |||||||| ||||||||||||||||| |
Sbjct: 61 ttgcattttgggtgattgtccatctttacccattcctcaagggtttggttgggaggcaga 120
Query: 199 acaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcc 258
|||| || || ||||||||||| |||||||||||||| ||||||||||||| || || |
Sbjct: 121 acagaacgccaacaattgtcattgtctggtccatcctcttggcttcaatcttttcgctgc 180
Query: 259 tttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtg 318
||||||| ||||| || |||||||||| |||||||||||||| || | ||||| || |
Sbjct: 181 tttgggtccggatagatcctttccttgggaaggatgatggtcccctgttggaggaatgcg 240
Query: 319 gtttggattgcaactagg 336
||||||||||||||||||
Sbjct: 241 gtttggattgcaactagg 258
>gb|CW319521.1|CW319521 104_812_11474531_116_35888_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474531, DNA
sequence
Length = 671
Score = 254 bits (128), Expect = 9e-066
Identities = 248/282 (87%), Gaps = 12/282 (4%)
Strand = Plus / Minus
Query: 376 gaagtatttttgccggcgtttgtccccatatttacagtg-cccctctgtaggtaagagac 434
|||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 655 gaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataagagac 596
Query: 435 aagaaatgtctcccgttccttttgatccatggtg-aacctcgacctaatatctgggatac 493
||||||||| ||| |||||||||||||||| |||||| |||||||||||| ||||
Sbjct: 595 c-gaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatatctgagatat 537
Query: 494 actggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcat 553
||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 536 actgg--ggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcat 479
Query: 554 atgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgag 609
||| ||||||||||||||||||||||||| |||||| ||||| |||||| ||||
Sbjct: 478 atg---gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgag 422
Query: 610 ccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
|||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 421 ccgaacagtaaggtgttttgattctgcactgctcccgtgtac 380
>gb|CD425235.1|CD425235 SA1_11_F01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_F01_A002 3', mRNA sequence
Length = 510
Score = 254 bits (128), Expect = 9e-066
Identities = 248/282 (87%), Gaps = 12/282 (4%)
Strand = Plus / Plus
Query: 376 gaagtatttttgccggcgtttgtccccatatttacagtg-cccctctgtaggtaagagac 434
|||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 17 gaagtatttttgccggtgtttgtccccatatttacaatgtcccctctgtagataagagac 76
Query: 435 aagaaatgtctcccgttccttttgatccatggtg-aacctcgacctaatatctgggatac 493
||||||||| ||| |||||||||||||||| |||||| |||||||||||| ||||
Sbjct: 77 c-gaaatgtcttgtgtttcttttgatccatggtggaacctcaacctaatatctgagatat 135
Query: 494 actggagggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcat 553
||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 136 actgg--ggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcat 193
Query: 554 atgcaagtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgag 609
||| ||||||||||||||||||||||||| |||||| ||||| |||||| ||||
Sbjct: 194 atg---gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgag 250
Query: 610 ccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
|||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 251 ccgaacagtaaggtgttttgattctgcactgctcccgtgtac 292
>gb|CD230894.1|CD230894 SS1_20_G01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_20_G01_A012 3', mRNA sequence
Length = 489
Score = 186 bits (94), Expect = 2e-045
Identities = 179/204 (87%), Gaps = 10/204 (4%)
Strand = Plus / Plus
Query: 453 cttttgatccatggtgaacc-tcgacctaatatctgggatacactggagggaaaatggag 511
|||||||||||||||| ||| || |||||||||||| |||| ||||| ||| |||||||
Sbjct: 31 cttttgatccatggtggaccctcaacctaatatctgagatatactgg--ggagaatggag 88
Query: 512 gctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgt 571
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 89 gctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgt 145
Query: 572 gcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagcagcaaggtattt 627
||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||| |||
Sbjct: 146 gcagcattctttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttt 205
Query: 628 tgatcctgcactgctcccgtgtac 651
|||| |||||||||||||||||||
Sbjct: 206 tgattctgcactgctcccgtgtac 229
>gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 362
Score = 178 bits (90), Expect = 4e-043
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||| | |||||||||| ||||| |||| ||| |||| ||||
Sbjct: 180 acacattcaaatggacaacccttctgatacctccgaccaccctgcttctactgaatttca 239
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
|||| || || ||||| ||||||||||||||||| |||||||| || |||||||| ||||
Sbjct: 240 ttggagtagtagctggcgtttccaatgcaatcaacaatggatatgaatcatgggggcccc 299
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 300 tgttcgggaagctcttctttgcattttgggtgattgtccatctttacccattcctcaaag 359
Query: 181 gt 182
||
Sbjct: 360 gt 361
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 170 bits (86), Expect = 1e-040
Identities = 266/326 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||| | ||||||||||| ||||| | ||||| | |||||||| || ||
Sbjct: 226 aaatggaccaccctgttgatacctcccaccacgcttctcctgctcaacttcatcggggtc 285
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctcttcggg 128
|| ||||| | || || || ||||| || || |||||||||||||| || |||||||||
Sbjct: 286 gtggctggaatctcgaacgcgatcaacaacgggtacgagtcatggggtcctctcttcggg 345
Query: 129 aagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggtt 188
||||||||||| || || |||||||| |||||||||| || |||||||| ||| ||||
Sbjct: 346 aagctcttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtg 405
Query: 189 gggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatc 248
|| |||| ||| |||| ||||| || || ||||||||||||||||||||||| || |||
Sbjct: 406 ggacggcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatc 465
Query: 249 ttctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttctt 308
||||| ||||| ||||| || || ||||| |||||||| ||| ||||| || |||||
Sbjct: 466 ttctcgctcctgtgggtccgcatcgacccattccttgccaagagcgatggacctcttctg 525
Query: 309 gaggagtgtggtttggattgcaacta 334
|||||||||||| |||| ||||||||
Sbjct: 526 gaggagtgtggtctggactgcaacta 551
>gb|BG947178.1|BG947178 IP1_3_E01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 167 bits (84), Expect = 2e-039
Identities = 156/178 (87%), Gaps = 9/178 (5%)
Strand = Plus / Plus
Query: 478 ctaatatctgggatacactggagggaaaatggaggctgcggcaatccttgtgcagatggg 537
|||||||||| |||| ||||| ||| |||||||||||||||||| ||||||||| ||||
Sbjct: 1 ctaatatctgagatatactgg--ggagaatggaggctgcggcaatgcttgtgcagttggg 58
Query: 538 ccgtggaatacagcatatgcaagtgtttgattgtgcagcattcttta----ttgggcgca 593
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct: 59 ccgtggaatacagcatatg---gtgtttgattgtgcagcattctttattacttgggcaca 115
Query: 594 aaactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
||| |||||| |||||||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 116 aaattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctcccgtgtac 173
>gb|BF585899.1|BF585899 FM1_25_H06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 486
Score = 165 bits (83), Expect = 6e-039
Identities = 155/177 (87%), Gaps = 9/177 (5%)
Strand = Plus / Plus
Query: 479 taatatctgggatacactggagggaaaatggaggctgcggcaatccttgtgcagatgggc 538
||||||||| |||| ||||| ||| |||||||||||||||||| ||||||||| |||||
Sbjct: 1 taatatctgagatatactgg--ggagaatggaggctgcggcaatgcttgtgcagttgggc 58
Query: 539 cgtggaatacagcatatgcaagtgtttgattgtgcagcattcttta----ttgggcgcaa 594
|||||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct: 59 cgtggaatacagcatatg---gtgtttgattgtgcagcattctttattacttgggcacaa 115
Query: 595 aactgatcgtctgagccgagcagcaaggtattttgatcctgcactgctcccgtgtac 651
|| |||||| |||||||| ||| ||||| ||||||| |||||||||||||||||||
Sbjct: 116 aattgatcgggtgagccgaacagtaaggtgttttgattctgcactgctcccgtgtac 172
>gb|AW680151.1|AW680151 WS1_4_E04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 483
Score = 161 bits (81), Expect = 1e-037
Identities = 138/156 (88%), Gaps = 7/156 (4%)
Strand = Plus / Plus
Query: 500 gggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaa 559
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 18 gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg--- 74
Query: 560 gtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagc 615
||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| |
Sbjct: 75 gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaac 134
Query: 616 agcaaggtattttgatcctgcactgctcccgtgtac 651
|| ||||| ||||||| |||||||||||||||||||
Sbjct: 135 agtaaggtgttttgattctgcactgctcccgtgtac 170
>gb|BG051468.1|BG051468 FM1_56_H02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 440
Score = 161 bits (81), Expect = 1e-037
Identities = 138/156 (88%), Gaps = 7/156 (4%)
Strand = Plus / Plus
Query: 500 gggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaa 559
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 2 gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg--- 58
Query: 560 gtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagc 615
||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| |
Sbjct: 59 gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaac 118
Query: 616 agcaaggtattttgatcctgcactgctcccgtgtac 651
|| ||||| ||||||| |||||||||||||||||||
Sbjct: 119 agtaaggtgttttgattctgcactgctcccgtgtac 154
>gb|BG948207.1|BG948207 IP1_10_F08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 161 bits (81), Expect = 1e-037
Identities = 138/156 (88%), Gaps = 7/156 (4%)
Strand = Plus / Plus
Query: 500 gggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaa 559
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 11 gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg--- 67
Query: 560 gtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagc 615
||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| |
Sbjct: 68 gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaac 127
Query: 616 agcaaggtattttgatcctgcactgctcccgtgtac 651
|| ||||| ||||||| |||||||||||||||||||
Sbjct: 128 agtaaggtgttttgattctgcactgctcccgtgtac 163
>gb|CF432975.1|CF432975 NIT1_20_E12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_E12_A002 3', mRNA sequence
Length = 532
Score = 161 bits (81), Expect = 1e-037
Identities = 138/156 (88%), Gaps = 7/156 (4%)
Strand = Plus / Plus
Query: 500 gggaaaatggaggctgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaa 559
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 12 gggagaatggaggctgcggcaatgcttgtgcagttgggccgtggaatacagcatatg--- 68
Query: 560 gtgtttgattgtgcagcattcttta----ttgggcgcaaaactgatcgtctgagccgagc 615
||||||||||||||||||||||||| |||||| ||||| |||||| |||||||| |
Sbjct: 69 gtgtttgattgtgcagcattctttattacttgggcacaaaattgatcgggtgagccgaac 128
Query: 616 agcaaggtattttgatcctgcactgctcccgtgtac 651
|| ||||| ||||||| |||||||||||||||||||
Sbjct: 129 agtaaggtgttttgattctgcactgctcccgtgtac 164
>gb|CN134554.1|CN134554 OX1_27_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C06_A002 3', mRNA sequence
Length = 677
Score = 153 bits (77), Expect = 2e-035
Identities = 194/233 (83%)
Strand = Plus / Plus
Query: 102 tacgagtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccat 161
|||||||||||||| || || ||||||||||||||||| || || |||||||| |||||
Sbjct: 33 tacgagtcatggggtcctcttttcgggaagctcttcttcgcgttctgggtgatcatccat 92
Query: 162 ctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatc 221
||||| || |||||||| ||| |||| || |||| ||| |||| ||||| || || |||
Sbjct: 93 ctgtacccgttcctcaagggtctggtgggacggcagaaccggacgccgacgatcgtgatc 152
Query: 222 gtctggtccatcctgctggcttcaatcttctcactcctttgggttcggattgaccctttc 281
|||||||||||||||||||| || |||||||| ||||| ||||| || || ||||| |||
Sbjct: 153 gtctggtccatcctgctggcctccatcttctcgctcctgtgggtccgcatcgacccgttc 212
Query: 282 cttgcaaaggatgatggtccacttcttgaggagtgtggtttggattgcaacta 334
||||| ||| ||||| || |||| |||||||||||| |||| ||||||||
Sbjct: 213 cttgccaagagcgatggaccttttctggaggagtgtggtctggactgcaacta 265
>gb|BG051682.1|BG051682 FM1_60_A04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 542
Score = 147 bits (74), Expect = 2e-033
Identities = 143/166 (86%)
Strand = Plus / Plus
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| ||||||||||||| ||||| || || ||||||||||| || ||||||
Sbjct: 12 ttcctcaagggtctggttgggaggcagaacagaacgccaacaattgtcattgtgtggtcc 71
Query: 231 atcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaag 290
||||| |||||||||||||||| || || ||||| ||||| || ||||||||||| |||
Sbjct: 72 atcctcttggcttcaatcttctcgctgctctgggtccggatagatcctttccttgcgaag 131
Query: 291 gatgatggtccacttcttgaggagtgtggtttggattgcaactagg 336
||||||||||| || | ||||| || |||||||||||||||||||
Sbjct: 132 gatgatggtcccctgttggaggaatgcggtttggattgcaactagg 177
>gb|AW671807.1|AW671807 LG1_351_D02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 141 bits (71), Expect = 9e-032
Identities = 125/142 (88%), Gaps = 7/142 (4%)
Strand = Plus / Plus
Query: 514 tgcggcaatccttgtgcagatgggccgtggaatacagcatatgcaagtgtttgattgtgc 573
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcggcaatgcttgtgcagttgggccgtggaatacagcatatg---gtgtttgattgtgc 57
Query: 574 agcattctttatt----gggcgcaaaactgatcgtctgagccgagcagcaaggtattttg 629
||||||||||||| |||| ||||| |||||| |||||||| ||| ||||| |||||
Sbjct: 58 agcattctttattacttgggcacaaaattgatcgggtgagccgaacagtaaggtgttttg 117
Query: 630 atcctgcactgctcccgtgtac 651
|| |||||||||||||||||||
Sbjct: 118 attctgcactgctcccgtgtac 139
>gb|BG051983.1|BG051983 RHIZ2_7_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 558
Score = 127 bits (64), Expect = 1e-027
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 131 gctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgg 190
||||||||| || || |||||||| |||||||||| || |||||||| ||| |||| ||
Sbjct: 1 gctcttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtggg 60
Query: 191 gaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatctt 250
|||| ||| |||| ||||| || || ||||||||||||||||||||||| || |||||
Sbjct: 61 acggcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatctt 120
Query: 251 ctcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttga 310
||| ||||| ||||| || || ||||| |||||||| ||| ||||| || ||||| ||
Sbjct: 121 ctcgctcctgtgggtccgcatcgacccattccttgccaagagcgatggacctcttctgga 180
Query: 311 ggagtgtggtttggattgcaacta 334
|||||||||| |||| ||||||||
Sbjct: 181 ggagtgtggtctggactgcaacta 204
>gb|BG241543.1|BG241543 RHIZ2_51_H04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 476
Score = 125 bits (63), Expect = 6e-027
Identities = 168/203 (82%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggg 191
|||||||| || || |||||||| |||||||||| || |||||||| ||| |||| ||
Sbjct: 1 ctcttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggtggga 60
Query: 192 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 251
|||| ||| |||| ||||| || || ||||||||||||||||||||||| || ||||||
Sbjct: 61 cggcagaaccggacgccgacgatcgtgatcgtctggtccatcctgctggcctccatcttc 120
Query: 252 tcactcctttgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgag 311
|| ||||| ||||| || || ||||| |||||||| ||| ||||| || ||||| |||
Sbjct: 121 tcgctcctgtgggtccgcatcgacccattccttgccaagagcgatggacctcttctggag 180
Query: 312 gagtgtggtttggattgcaacta 334
||||||||| |||| ||||||||
Sbjct: 181 gagtgtggtctggactgcaacta 203
>gb|BG241497.1|BG241497 RHIZ2_50_A08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 111 bits (56), Expect = 8e-023
Identities = 155/188 (82%)
Strand = Plus / Plus
Query: 147 tgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggaca 206
|||||||| |||||||||| || |||||||| ||| |||| || |||| ||| ||||
Sbjct: 6 tgggtgatcatccatctgtacccgttcctcaagggtctggtgggacggcagaaccggacg 65
Query: 207 ccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggtt 266
||||| || || |||||||||||| |||||||||| || |||||||| ||||| |||||
Sbjct: 66 ccgacgatcgtgatcgtctggtccctcctgctggcctccatcttctcgctcctgtgggtc 125
Query: 267 cggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggat 326
|| || ||||| |||||||| ||| ||||| || ||||| |||||||||||| ||||
Sbjct: 126 cgcatcgacccattccttgccaagagcgatggacctcttctggaggagtgtggtctggac 185
Query: 327 tgcaacta 334
||||||||
Sbjct: 186 tgcaacta 193
>gb|BE126049.1|BE126049 DG1_65_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 381
Score = 103 bits (52), Expect = 2e-020
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| |||| || |||| ||| |||| ||||| || || ||||||||||||
Sbjct: 2 ttcctcaagggtctggtgggacggcagaaccggacgccgacgatcgtgatcgtctggtcc 61
Query: 231 atcctgctggcttcaatcttctcactcctttgggttcggattgaccctttccttgcaaag 290
||||||||||| || |||||||| ||||| ||||| || || ||||| |||||||| |||
Sbjct: 62 atcctgctggcctccatcttctcgctcctgtgggtccgcatcgacccgttccttgccaag 121
Query: 291 gatgatggtccacttcttgaggagtgtggtttggattgcaacta 334
||||| || ||||| |||||||||||| |||| ||||||||
Sbjct: 122 agcgatggacctcttctggaggagtgtggtctggactgcaacta 165
>gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_67_A05_A012 3', mRNA sequence
Length = 539
Score = 87.7 bits (44), Expect = 1e-015
Identities = 98/116 (84%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| |||| |||| ||||||| ||| ||| |||||||||| || ||
Sbjct: 91 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 150
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
|| |||||||||||||| || ||||||||||||||||| |||| |||||||||||
Sbjct: 151 tttgggaagctcttcttcgcgttttgggtgattgtccacttgtaccccttcctcaa 206
>gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_F12_A002 5', mRNA sequence
Length = 704
Score = 85.7 bits (43), Expect = 5e-015
Identities = 145/179 (81%)
Strand = Plus / Plus
Query: 9 aaatggactaccttattgatacctcctaccactttgctcctattgaacttcattggtgtg 68
|||||||| ||| | ||||| ||||| ||||| | ||||| |||||||||| || ||
Sbjct: 509 aaatggaccaccctgttgatccctccaaccacgcttctcctgctgaacttcatcggggtc 568
Query: 69 gtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctcttcggg 128
|| ||||| | || || || ||||| || || |||||||||||||| || |||||||||
Sbjct: 569 gtggctggaatctcgaacgcgatcaacaacgggtacgagtcatggggtcctctcttcggg 628
Query: 129 aagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggt 187
||||||||||| || || |||||||| |||||||||| || |||||||| ||| ||||
Sbjct: 629 aagctcttcttcgcgttctgggtgatcatccatctgtacccgttcctcaagggtctggt 687
>gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 621
Score = 79.8 bits (40), Expect = 3e-013
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| |||| |||| ||||||| ||| ||| |||||||||| || ||
Sbjct: 301 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 242
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||||||| |||| |||||||||||
Sbjct: 241 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 186
>gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 79.8 bits (40), Expect = 3e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| |||| |||| ||||||| ||| ||| |||||||||| || ||
Sbjct: 91 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 150
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||||||| |||| |||||||||||
Sbjct: 151 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 206
>gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 79.8 bits (40), Expect = 3e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| |||| |||| ||||||| ||| ||| |||||||||| || ||
Sbjct: 141 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 200
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||||||| |||| |||||||||||
Sbjct: 201 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 256
>gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G12_A002 3', mRNA sequence
Length = 743
Score = 79.8 bits (40), Expect = 3e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| |||| |||| ||||||| ||| ||| |||||||||| || ||
Sbjct: 297 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 356
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
|| |||||||||||||| || || |||||||||||||| |||| |||||||||||
Sbjct: 357 tttgggaagctcttcttcgcgttctgggtgattgtccacttgtaccccttcctcaa 412
>gb|BM331086.1|BM331086 PIC1_69_D12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 598
Score = 71.9 bits (36), Expect = 7e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 261 tgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggt 320
||||| ||||| || ||||||||||| |||||||||||||| || | ||||| || |||
Sbjct: 6 tgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggt 65
Query: 321 ttggattgcaactagg 336
||||||||||||||||
Sbjct: 66 ttggattgcaactagg 81
>gb|BM331095.1|BM331095 PIC1_69_E12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 595
Score = 71.9 bits (36), Expect = 7e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 261 tgggttcggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggt 320
||||| ||||| || ||||||||||| |||||||||||||| || | ||||| || |||
Sbjct: 2 tgggtccggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggt 61
Query: 321 ttggattgcaactagg 336
||||||||||||||||
Sbjct: 62 ttggattgcaactagg 77
>gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_C10_A002 3', mRNA sequence
Length = 666
Score = 71.9 bits (36), Expect = 7e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| |||| |||| ||||||| ||| ||| |||||||||| || ||
Sbjct: 223 ggtgtggttgctggcacttcctatgcgatcaatagtggttaccagtcatgggggcctctt 282
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
|| |||||||||||||| || || ||||||| |||||| |||| |||||||||||
Sbjct: 283 tttgggaagctcttcttcgcgttctgggtgactgtccacttgtaccccttcctcaa 338
>gb|BM331336.1|BM331336 PIC1_64_G10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 449
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 267 cggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggat 326
||||| || ||||||||||| |||||||||||||| || | ||||| || |||||||||
Sbjct: 5 cggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggtttggat 64
Query: 327 tgcaactagg 336
||||||||||
Sbjct: 65 tgcaactagg 74
>gb|CN152146.1|CN152146 WOUND1_80_C12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_80_C12_A002 3', mRNA sequence
Length = 750
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 267 cggattgaccctttccttgcaaaggatgatggtccacttcttgaggagtgtggtttggat 326
||||| || ||||||||||| |||||||||||||| || | ||||| || |||||||||
Sbjct: 1 cggatagatcctttccttgcgaaggatgatggtcccctgttggaggaatgcggtttggat 60
Query: 327 tgcaactagg 336
||||||||||
Sbjct: 61 tgcaactagg 70
>gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 777
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||| || |
Sbjct: 390 agtcatggggcccgctcttcggcaagctcttcttcgcattctgggtcatcgtccacctct 449
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 450 acccgttcctcaa 462
>gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 638
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||| || |
Sbjct: 579 agtcatggggcccgctcttcggcaagctcttcttcgcattctgggtcatcgtccacctct 520
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 519 acccgttcctcaa 507
>gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500738, DNA
sequence
Length = 854
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||| || |
Sbjct: 347 agtcatggggcccgctcttcggcaagctcttcttcgcattctgggtcatcgtccacctct 288
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 287 acccgttcctcaa 275
>gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 601
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||| || |
Sbjct: 266 agtcatggggcccgctcttcggcaagctcttcttcgcattctgggtcatcgtccacctct 207
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 206 acccgttcctcaa 194
>gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 686
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||| || |
Sbjct: 596 agtcatggggcccgctcttcggcaagctcttcttcgcattctgggtcatcgtccacctct 655
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 656 acccgttcctcaa 668
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,481
Number of Sequences: 832831
Number of extensions: 156481
Number of successful extensions: 42003
Number of sequences better than 0.5: 106
Number of HSP's better than 0.5 without gapping: 105
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41774
Number of HSP's gapped (non-prelim): 119
length of query: 667
length of database: 491,359,669
effective HSP length: 19
effective length of query: 648
effective length of database: 475,535,880
effective search space: 308147250240
effective search space used: 308147250240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)