BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.5
(733 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW384483.1|CW384483 fsbb001f067i14f0 Sorghum methylation... 837 0.0
gb|CW310303.1|CW310303 104_799_11469644_116_35746_074 Sorgh... 805 0.0
gb|AW924764.1|AW924764 WS1_72_G07.b1_A002 Water-stressed 1 ... 797 0.0
gb|CD227917.1|CD227917 CCC1_56_G05.g1_A007 Callus culture/c... 793 0.0
gb|CN124945.1|CN124945 RHOH1_7_H09.g1_A002 Acid- and alkali... 773 0.0
gb|BG412792.1|BG412792 OV2_34_H04.b1_A002 Ovary 2 (OV2) Sor... 743 0.0
gb|BG240279.1|BG240279 OV1_20_A11.b1_A002 Ovary 1 (OV1) Sor... 726 0.0
gb|CW311468.1|CW311468 104_801_11470249_148_36282_015 Sorgh... 714 0.0
gb|AW672027.1|AW672027 LG1_354_A12.b1_A002 Light Grown 1 (L... 712 0.0
gb|AW746435.1|AW746435 WS1_53_G03.b1_A002 Water-stressed 1 ... 708 0.0
gb|CW129319.1|CW129319 104_511_11114493_148_34762_091 Sorgh... 704 0.0
gb|CW454043.1|CW454043 fsbb001f198e23f0 Sorghum methylation... 694 0.0
gb|CW454044.1|CW454044 fsbb001f198e23k0 Sorghum methylation... 690 0.0
gb|BG158445.1|BG158445 FM1_60_F10.b1_A003 Floral-Induced Me... 682 0.0
gb|CW310304.1|CW310304 104_799_11469644_148_35750_074 Sorgh... 680 0.0
gb|BE356582.1|BE356582 DG1_126_E06.b1_A002 Dark Grown 1 (DG... 676 0.0
gb|BE356628.1|BE356628 DG1_126_E06.g1_A002 Dark Grown 1 (DG... 670 0.0
gb|BG051739.1|BG051739 FM1_60_F10.g1_A003 Floral-Induced Me... 660 0.0
gb|CF757933.1|CF757933 DSAF1_25_B11.g1_A011 Drought-stresse... 658 0.0
gb|CF490113.1|CF490113 POL1_62_C01.g1_A002 Pollen Sorghum b... 630 e-179
gb|CD227698.1|CD227698 CCC1_53_B08.b1_A007 Callus culture/c... 624 e-177
gb|BG049446.1|BG049446 OV1_20_A11.g1_A002 Ovary 1 (OV1) Sor... 618 e-175
gb|BG050143.1|BG050143 FM1_67_B12.b1_A003 Floral-Induced Me... 579 e-163
gb|CN124864.1|CN124864 RHOH1_7_H09.b1_A002 Acid- and alkali... 577 e-163
gb|AW565949.1|AW565949 LG1_354_A12.g1_A002 Light Grown 1 (L... 571 e-161
gb|AW925050.1|AW925050 WS1_74_G10.b1_A002 Water-stressed 1 ... 571 e-161
gb|CF490031.1|CF490031 POL1_62_C01.b1_A002 Pollen Sorghum b... 569 e-160
gb|CD226182.1|CD226182 CCC1_44_A04.b1_A007 Callus culture/c... 567 e-160
gb|CL187762.1|CL187762 104_403_10901109_114_32459_085 Sorgh... 539 e-151
gb|BF704767.1|BF704767 FM1_51_C06.b1_A003 Floral-Induced Me... 535 e-150
gb|AW747659.1|AW747659 WS1_74_G10.g1_A002 Water-stressed 1 ... 525 e-147
gb|CL187296.1|CL187296 104_402_10900781_116_32436_019 Sorgh... 513 e-144
gb|BE356499.1|BE356499 DG1_125_G10.g1_A002 Dark Grown 1 (DG... 492 e-137
gb|AW924861.1|AW924861 WS1_72_G07.g1_A002 Water-stressed 1 ... 440 e-122
gb|BQ656052.1|BQ656052 pRC0368 Sorghum halepense rhizome cD... 410 e-113
gb|CW375799.1|CW375799 fsbb001f053f11f0 Sorghum methylation... 400 e-110
gb|CL165793.1|CL165793 104_361_10808905_114_31820_121 Sorgh... 387 e-105
gb|BF656536.1|BF656536 FM1_51_C06.g1_A003 Floral-Induced Me... 385 e-105
gb|CW311467.1|CW311467 104_801_11470249_116_36281_015 Sorgh... 367 e-099
gb|CF772218.1|CF772218 DSBF1_30_H03.g1_A010 Drought-stresse... 305 3e-081
gb|BE366223.1|BE366223 PI1_31_A07.b2_A002 Pathogen induced ... 228 6e-058
gb|AI724349.1|AI724349 RHIZ1_33_B10.y2_A001 Rhizome1 (RHIZ1... 168 5e-040
gb|BE356498.1|BE356498 DG1_125_G11.g1_A002 Dark Grown 1 (DG... 127 2e-027
gb|BE356434.1|BE356434 DG1_125_G10.b1_A002 Dark Grown 1 (DG... 121 1e-025
gb|AW746508.1|AW746508 WS1_53_G03.g1_A002 Water-stressed 1 ... 117 1e-024
gb|AI724932.1|AI724932 RHIZ1_31_E03.y3_A001 Rhizome1 (RHIZ1... 96 5e-018
gb|AI724732.1|AI724732 RHIZ1_26_D06.y2_A001 Rhizome1 (RHIZ1... 94 2e-017
gb|BZ332746.1|BZ332746 hx30d05.b1 WGS-SbicolorF (JM107 adap... 88 1e-015
gb|BE366283.1|BE366283 PI1_31_A07.g1_A002 Pathogen induced ... 86 5e-015
gb|CN124944.1|CN124944 RHOH1_7_H08.g1_A002 Acid- and alkali... 86 5e-015
gb|BZ337354.1|BZ337354 ia86g12.b1 WGS-SbicolorF (JM107 adap... 76 5e-012
gb|BZ337355.1|BZ337355 ia86g12.g1 WGS-SbicolorF (JM107 adap... 76 5e-012
gb|BZ338614.1|BZ338614 ia96f09.g1 WGS-SbicolorF (JM107 adap... 76 5e-012
gb|CD220239.1|CD220239 CCC1_66_H04.b1_A007 Callus culture/c... 76 5e-012
gb|AW671110.1|AW671110 LG1_329_E02.b1_A002 Light Grown 1 (L... 60 3e-007
gb|AW565819.1|AW565819 LG1_352_B02.g1_A002 Light Grown 1 (L... 52 7e-005
gb|CW264806.1|CW264806 104_733_11231508_116_35256_036 Sorgh... 44 0.018
gb|CW381806.1|CW381806 fsbb001f063g03k0 Sorghum methylation... 44 0.018
gb|CF486083.1|CF486083 POL1_35_C12.g1_A002 Pollen Sorghum b... 44 0.018
gb|CW127980.1|CW127980 104_509_11113736_116_34745_026 Sorgh... 42 0.071
gb|CW159616.1|CW159616 104_565_11149452_116_36406_034 Sorgh... 42 0.071
gb|CW205677.1|CW205677 104_634_11187191_116_36951_094 Sorgh... 42 0.071
gb|CW218662.1|CW218662 104_652_11196309_116_37528_089 Sorgh... 42 0.071
gb|CW225910.1|CW225910 104_663_11204609_116_37207_067 Sorgh... 42 0.071
gb|CW228135.1|CW228135 104_667_11206197_116_37239_081 Sorgh... 42 0.071
gb|CW450499.1|CW450499 fsbb001f189c16f0 Sorghum methylation... 42 0.071
gb|BE592948.1|BE592948 WS1_92_D08.b1_A002 Water-stressed 1 ... 42 0.071
gb|CF489817.1|CF489817 POL1_59_F12.g1_A002 Pollen Sorghum b... 42 0.071
gb|CL162048.1|CL162048 104_354_10806144_114_31830_048 Sorgh... 40 0.28
gb|CL170550.1|CL170550 104_371_10813901_148_31790_221 Sorgh... 40 0.28
gb|CW042041.1|CW042041 104_275_10506902_114_30284 Sorghum m... 40 0.28
gb|CW119437.1|CW119437 104_496_11108768_148_34635_026 Sorgh... 40 0.28
gb|CW150897.1|CW150897 104_551_11143655_116_36307_088 Sorgh... 40 0.28
gb|CW191706.1|CW191706 104_613_11178637_116_36935_049 Sorgh... 40 0.28
gb|CW191707.1|CW191707 104_613_11178637_148_36936_049 Sorgh... 40 0.28
gb|CW259247.1|CW259247 104_725_11228319_116_35182_056 Sorgh... 40 0.28
gb|CW336952.1|CW336952 104_836_11483875_116_36110_072 Sorgh... 40 0.28
gb|CW422972.1|CW422972 fsbb001f132i22f0 Sorghum methylation... 40 0.28
gb|BM323062.1|BM323062 PIC1_12_A08.b1_A002 Pathogen-infecte... 40 0.28
gb|CD236094.1|CD236094 SS1_25_G07.g1_A012 Salt-stressed see... 40 0.28
gb|CD430758.1|CD430758 ETH1_20_H03.g1_A002 Ethylene-treated... 40 0.28
gb|CD431862.1|CD431862 ETH1_11_A05.g1_A002 Ethylene-treated... 40 0.28
gb|CD462626.1|CD462626 ETH1_38_H10.g1_A002 Ethylene-treated... 40 0.28
gb|CF428338.1|CF428338 PH1_14_D07.g1_A002 Phosphorous-defic... 40 0.28
gb|CN123906.1|CN123906 RHOH1_1_A10.g1_A002 Acid- and alkali... 40 0.28
gb|CN124918.1|CN124918 RHOH1_7_E12.g1_A002 Acid- and alkali... 40 0.28
gb|CN128083.1|CN128083 RHOH1_26_H08.g1_A002 Acid- and alkal... 40 0.28
gb|CN128498.1|CN128498 RHOH1_29_H11.g1_A002 Acid- and alkal... 40 0.28
gb|CN128800.1|CN128800 RHOH1_31_D12.g1_A002 Acid- and alkal... 40 0.28
gb|CN132827.1|CN132827 OX1_8_A12.g1_A002 Oxidatively-stress... 40 0.28
gb|CN136541.1|CN136541 OX1_43_G06.g1_A002 Oxidatively-stres... 40 0.28
gb|CN141048.1|CN141048 OX1_49_B07.b1_A002 Oxidatively-stres... 40 0.28
gb|CN141133.1|CN141133 OX1_49_B07.g1_A002 Oxidatively-stres... 40 0.28
gb|CX608256.1|CX608256 ANR1_37_C04.g1_A002 Anaerobic roots ... 40 0.28
>gb|CW384483.1|CW384483 fsbb001f067i14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067i14, DNA
sequence
Length = 660
Score = 837 bits (422), Expect = 0.0
Identities = 485/506 (95%)
Strand = Plus / Plus
Query: 218 cttcaagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttgggg 277
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36 cttcaagcggatgggatctcgacctcgccgtcatcaatctcctgttgcaggtccttgggg 95
Query: 278 tccttgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtg 337
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tccttgccgtctacggtgcatccgacgctgacgcaggtgccgaggatctccttgacggtg 155
Query: 338 ccggccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcg 397
||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 156 ccggccatctccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcg 215
Query: 398 tcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggc 457
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 216 tcgaggctgatgttgccgctgtgcttaatgttcttgaccttcttcctgtccctctcgggc 275
Query: 458 tccttgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctgg 517
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 276 tccttgagcgccttgatgacgagcgcggcggcggagggcacgacggagaccttggcctgc 335
Query: 518 cggttctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctcc 577
| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 336 ctgttctgtaccgtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcc 395
Query: 578 ttggcgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgcc 637
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 396 ttggcgatgtcctcgccgatcttcttcggggagaggccgagcgggccgatcttgggcgcc 455
Query: 638 agggacgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgc 697
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 456 agggacgacgccgcgcccacctccccgcccgtcacgcggacgaagacctccaccacctgc 515
Query: 698 gacgggtcgagcttgggcggcatggc 723
|||||||||||||| |||||||||||
Sbjct: 516 gacgggtcgagcttcggcggcatggc 541
>gb|CW310303.1|CW310303 104_799_11469644_116_35746_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469644, DNA
sequence
Length = 645
Score = 805 bits (406), Expect = 0.0
Identities = 478/502 (95%)
Strand = Plus / Plus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 172
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 173 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 232
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 233 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 292
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 293 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 352
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 353 tgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggt 412
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 413 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 472
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 473 cgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcg 532
Query: 642 acgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacg 701
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 533 acgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacg 592
Query: 702 ggtcgagcttgggcggcatggc 723
||||||||||||||||||||||
Sbjct: 593 ggtcgagcttgggcggcatggc 614
>gb|AW924764.1|AW924764 WS1_72_G07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 797 bits (402), Expect = 0.0
Identities = 477/502 (95%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 506
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 505 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 446
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 445 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 386
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 326
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 325 tgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggt 266
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tctggacggtgagcttgacggtgacgcgggggcccttccagtccttggccgtctccttgg 206
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 205 cgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcg 146
Query: 642 acgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacg 701
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 145 acgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacg 86
Query: 702 ggtcgagcttgggcggcatggc 723
||||||||||||||||||||||
Sbjct: 85 ggtcgagcttgggcggcatggc 64
>gb|CD227917.1|CD227917 CCC1_56_G05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_G05_A007 5', mRNA sequence
Length = 637
Score = 793 bits (400), Expect = 0.0
Identities = 476/502 (94%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 565 aagcggacggtatctccacctngccgtcgtcaatctcctgctgcaggtccttggggtcct 506
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 505 ngccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 446
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 445 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 386
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 326
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 325 tgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggt 266
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 206
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 205 cgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcg 146
Query: 642 acgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacg 701
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 145 acgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacg 86
Query: 702 ggtcgagcttgggcggcatggc 723
||||||||||||||||||||||
Sbjct: 85 ggtcgagcttgggcggcatggc 64
>gb|CN124945.1|CN124945 RHOH1_7_H09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H09_A002 5', mRNA sequence
Length = 792
Score = 773 bits (390), Expect = 0.0
Identities = 474/502 (94%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 722 aagcggacggtatctccacctcgctgtcgtcaatctcctgctgcaggtccttggggtcct 663
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 662 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 603
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 602 ccatttcgttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 543
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 542 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 483
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct: 482 tgagcgccttgatgacgagcgccgcggcggagggaccgacggagaccttggcctgtcggt 423
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 422 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctcctcgg 363
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 362 cgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcg 303
Query: 642 acgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacg 701
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 302 acgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacg 243
Query: 702 ggtcgagcttgggcggcatggc 723
||||||||||||||||||||||
Sbjct: 242 ggtcgagcttgggcggcatggc 221
>gb|BG412792.1|BG412792 OV2_34_H04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 743 bits (375), Expect = 0.0
Identities = 438/459 (95%)
Strand = Plus / Minus
Query: 265 caggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtgccgaggat 324
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 510 caggtccttggggtccttgccgtcgacggtgcatccgacactgacgcaggtgccgagaat 451
Query: 325 ctccttgacggtgccggccaactccttggccatggacctgttcctcatggtcctggcgat 384
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct: 450 ctccttgacggtgccggccatttccttggccatggacctgggcctcatggtcttggcgat 391
Query: 385 ctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttccg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 ctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttgcg 331
Query: 445 gtccctctcgggctccttgagcgccttgatgacgagcgcggcggcggaggggacgacgga 504
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 330 gtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggaacgacgga 271
Query: 505 gaccttggcctggcggttctggacggtgagcttgacggtgacgcgcaggcccttccagtc 564
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 270 gaccttggcctgtcggttctggacggtgagcttgacggtgacgcggaggcccttccagtc 211
Query: 565 cttggccgtctccttggcgatgtcctcgccgatcttcttcggggagagcccgagcgggcc 624
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 210 cttggccgtctccttggcgatgtcctctccgatcttcttgggggagagaccgagcgggcc 151
Query: 625 gatcttgggcgccagggacgacgccgcgccgacctcgccgcccgtcacccggacgaagac 684
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 150 gatcttgggggccagcgacgacgccgcgccgacctcgccgccggtcacgcggacgaacac 91
Query: 685 ctccaccacctgcgacgggtcgagcttgggcggcatggc 723
|||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ctccaccacctgcgacgggtcgagcttgggcggcatggc 52
>gb|BG240279.1|BG240279 OV1_20_A11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 726 bits (366), Expect = 0.0
Identities = 462/494 (93%)
Strand = Plus / Minus
Query: 230 gggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtccttgccgtcg 289
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 544 gggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtccttgccatca 485
Query: 290 acggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccggccaactcc 349
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 484 acggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccggccatctcc 425
Query: 350 ttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcgaggctgatg 409
||||||||||||||| || ||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 424 ttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatg 365
Query: 410 ttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgcc 469
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 364 ttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgcc 305
Query: 470 ttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacg 529
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 304 ttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacg 245
Query: 530 gtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcc 589
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 244 gtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcc 185
Query: 590 tcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgcc 649
|| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 184 tcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgcc 125
Query: 650 gcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagc 709
|||||||||||||| |||||||| ||||||||||||||||||||||| || ||||| | |
Sbjct: 124 gcgccgacctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaac 65
Query: 710 ttgggcggcatggc 723
||||||||||||||
Sbjct: 64 ttgggcggcatggc 51
>gb|CW311468.1|CW311468 104_801_11470249_148_36282_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470249, DNA
sequence
Length = 694
Score = 714 bits (360), Expect = 0.0
Identities = 453/484 (93%)
Strand = Plus / Plus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 206 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 265
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 325
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 326 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 385
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 445
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 446 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 505
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 506 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 565
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 566 cgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcg 625
Query: 642 acgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacg 701
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |
Sbjct: 626 acgacgccgcgccgacctcgcctcccgtcacgcggacgaagacctccaccacctgagatg 685
Query: 702 ggtc 705
||||
Sbjct: 686 ggtc 689
>gb|AW672027.1|AW672027 LG1_354_A12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 712 bits (359), Expect = 0.0
Identities = 455/487 (93%)
Strand = Plus / Minus
Query: 237 cgacctcgccgtcatcaatctcctgctgcaggtccttggggtccttgccgtcgacggtgc 296
||||||| || ||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 558 cgacctcaccatcatcgatctcctgctgcaggtccttggggtccttgccatcaacggtgc 499
Query: 297 acccgacgctgacgcaggtgccgaggatctccttgacggtgccggccaactccttggcca 356
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 498 acccaacgctgacgcaggtcccgaggatctccttgacggtgccggccatctccttggcca 439
Query: 357 tggacctgttcctcatggtcctggcgatctcgacgacgtcgtcgaggctgatgttgccgc 416
|||||||| || ||||||| ||||||||||||| | ||||||||||||||||||||| |
Sbjct: 438 tggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatgttgccac 379
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 tgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgccttgatga 319
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 318 cgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacggtgagct 259
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 258 tgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccga 199
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 198 tcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccga 139
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
||||||| |||||||| ||||||||||||||||||||||| || ||||| | ||||||||
Sbjct: 138 cctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaacttgggcg 79
Query: 717 gcatggc 723
|||||||
Sbjct: 78 gcatggc 72
>gb|AW746435.1|AW746435 WS1_53_G03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 498
Score = 708 bits (357), Expect = 0.0
Identities = 420/441 (95%)
Strand = Plus / Minus
Query: 283 gccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccggc 342
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 gccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggc 439
Query: 343 caactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcgag 402
|| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 438 catttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgag 379
Query: 403 gctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcctt 462
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 378 gctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcctt 319
Query: 463 gagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggtt 522
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 318 gagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggtt 259
Query: 523 ctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttggc 582
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 258 ctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggc 199
Query: 583 gatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggga 642
||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct: 198 gatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcga 139
Query: 643 cgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgg 702
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 138 cgacgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgg 79
Query: 703 gtcgagcttgggcggcatggc 723
|||||||||||||||||||||
Sbjct: 78 gtcgagcttgggcggcatggc 58
>gb|CW129319.1|CW129319 104_511_11114493_148_34762_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114493, DNA
sequence
Length = 665
Score = 704 bits (355), Expect = 0.0
Identities = 418/439 (95%)
Strand = Plus / Plus
Query: 285 cgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccggcca 344
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggcca 60
Query: 345 actccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcgaggc 404
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 61 tttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggc 120
Query: 405 tgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctccttga 464
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 tgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttga 180
Query: 465 gcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggttct 524
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct: 181 gcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttct 240
Query: 525 ggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttggcga 584
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 ggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcga 300
Query: 585 tgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccagggacg 644
||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 301 tgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacg 360
Query: 645 acgccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggt 704
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct: 361 acgccgcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgggt 420
Query: 705 cgagcttgggcggcatggc 723
|||||||||||||||||||
Sbjct: 421 cgagcttgggcggcatggc 439
>gb|CW454043.1|CW454043 fsbb001f198e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e23, DNA
sequence
Length = 718
Score = 694 bits (350), Expect = 0.0
Identities = 413/434 (95%)
Strand = Plus / Minus
Query: 290 acggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccggccaactcc 349
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 718 acggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccggccatttcc 659
Query: 350 ttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcgaggctgatg 409
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 658 ttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatg 599
Query: 410 ttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgcc 469
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598 ttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgcc 539
Query: 470 ttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacg 529
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 538 ttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacg 479
Query: 530 gtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcc 589
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcc 419
Query: 590 tcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgcc 649
|| ||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 418 tctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgcc 359
Query: 650 gcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagc 709
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 358 gcgccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgggtcgagc 299
Query: 710 ttgggcggcatggc 723
||||||||||||||
Sbjct: 298 ttgggcggcatggc 285
>gb|CW454044.1|CW454044 fsbb001f198e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e23, DNA
sequence
Length = 737
Score = 690 bits (348), Expect = 0.0
Identities = 411/432 (95%)
Strand = Plus / Plus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 306 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 365
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 366 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 425
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 426 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 485
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 486 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 545
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 546 tgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggt 605
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 606 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 665
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 666 cgatgtcctctccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcg 725
Query: 642 acgacgccgcgc 653
||||||||||||
Sbjct: 726 acgacgccgcgc 737
>gb|BG158445.1|BG158445 FM1_60_F10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 511
Score = 682 bits (344), Expect = 0.0
Identities = 431/460 (93%)
Strand = Plus / Minus
Query: 264 gcaggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtgccgagga 323
|||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct: 511 gcaggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgagga 452
Query: 324 tctccttgacggtgccggccaactccttggccatggacctgttcctcatggtcctggcga 383
||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||||
Sbjct: 451 tctccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcga 392
Query: 384 tctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttcc 443
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 391 tctcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcc 332
Query: 444 ggtccctctcgggctccttgagcgccttgatgacgagcgcggcggcggaggggacgacgg 503
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 331 tgtccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacgg 272
Query: 504 agaccttggcctggcggttctggacggtgagcttgacggtgacgcgcaggcccttccagt 563
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 271 agaccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagt 212
Query: 564 ccttggccgtctccttggcgatgtcctcgccgatcttcttcggggagagcccgagcgggc 623
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 211 ccttggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggc 152
Query: 624 cgatcttgggcgccagggacgacgccgcgccgacctcgccgcccgtcacccggacgaaga 683
|||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 151 cgatcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcggacgaaga 92
Query: 684 cctccaccacctgcgacgggtcgagcttgggcggcatggc 723
||||||||||||| || ||||| | |||||||||||||||
Sbjct: 91 cctccaccacctgagatgggtccaacttgggcggcatggc 52
>gb|CW310304.1|CW310304 104_799_11469644_148_35750_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469644, DNA
sequence
Length = 608
Score = 680 bits (343), Expect = 0.0
Identities = 400/419 (95%)
Strand = Plus / Minus
Query: 305 ctgacgcaggtgccgaggatctccttgacggtgccggccaactccttggccatggacctg 364
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 606 ctgacgcaggtgccgagaatctccttgacggtgccggccatttccttggccatggacctg 547
Query: 365 ttcctcatggtcctggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttg 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggcctcatggtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttg 487
Query: 425 atgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatgacgagcgcg 484
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atgttcttgaccttcttgcggtccctctcgggctccttgagcgccttgatgacgagcgcc 427
Query: 485 gcggcggaggggacgacggagaccttggcctggcggttctggacggtgagcttgacggtg 544
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 gcggcggagggaacgacggagaccttggcctgtcggttctggacggtgagcttgacggtg 367
Query: 545 acgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccgatcttcttc 604
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 acgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttg 307
Query: 605 ggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccgacctcgccg 664
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 306 ggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgccg 247
Query: 665 cccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcggcatggc 723
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccggtcacgcggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggc 188
>gb|BE356582.1|BE356582 DG1_126_E06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 676 bits (341), Expect = 0.0
Identities = 428/457 (93%)
Strand = Plus / Minus
Query: 267 ggtccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatct 326
||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||
Sbjct: 526 ggtccttggggtccttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatct 467
Query: 327 ccttgacggtgccggccaactccttggccatggacctgttcctcatggtcctggcgatct 386
|||||||||||||||||| ||||||||||||||||||| || ||||||| |||||||||
Sbjct: 466 ccttgacggtgccggccatctccttggccatggacctgggccgcatggtcttggcgatct 407
Query: 387 cgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgttcttgaccttcttccggt 446
|||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 406 cgacaatgtcgtcgaggctgatgttgccactgtgcttgatgttcttgaccttcttcctgt 347
Query: 447 ccctctcgggctccttgagcgccttgatgacgagcgcggcggcggaggggacgacggaga 506
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 346 ccctctcgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggaga 287
Query: 507 ccttggcctggcggttctggacggtgagcttgacggtgacgcgcaggcccttccagtcct 566
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 286 ccttggcctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtcct 227
Query: 567 tggccgtctccttggcgatgtcctcgccgatcttcttcggggagagcccgagcgggccga 626
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 226 tggcggtctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccga 167
Query: 627 tcttgggcgccagggacgacgccgcgccgacctcgccgcccgtcacccggacgaagacct 686
||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 166 tcttgggtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcggacgaagacct 107
Query: 687 ccaccacctgcgacgggtcgagcttgggcggcatggc 723
|||||||||| || ||||| | |||||||||||||||
Sbjct: 106 ccaccacctgagatgggtccaacttgggcggcatggc 70
>gb|BE356628.1|BE356628 DG1_126_E06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 633
Score = 670 bits (338), Expect = 0.0
Identities = 422/450 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 450 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 391
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 390 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 331
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 330 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 271
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 270 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 211
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 210 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 151
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 150 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 91
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 90 cgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcg 31
Query: 642 acgacgccgcgccgacctcgccgcccgtca 671
|||||||||||||||||||||| |||||||
Sbjct: 30 acgacgccgcgccgacctcgcctcccgtca 1
>gb|BG051739.1|BG051739 FM1_60_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 576
Score = 660 bits (333), Expect = 0.0
Identities = 420/449 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 449 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 390
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 330
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||| ||||
Sbjct: 329 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcctcga 270
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 269 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 210
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 209 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 150
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 149 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 90
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 89 cgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcg 30
Query: 642 acgacgccgcgccgacctcgccgcccgtc 670
|||||||||||||||||||||| ||||||
Sbjct: 29 acgacgccgcgccgacctcgcctcccgtc 1
>gb|CF757933.1|CF757933 DSAF1_25_B11.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_B11_A011 3', mRNA sequence
Length = 580
Score = 658 bits (332), Expect = 0.0
Identities = 413/440 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 440 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 381
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 321
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 320 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 261
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 201
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 200 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 141
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 140 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 81
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccaggg 641
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 80 cgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcg 21
Query: 642 acgacgccgcgccgacctcg 661
||||||||||||||||||||
Sbjct: 20 acgacgccgcgccgacctcg 1
>gb|CF490113.1|CF490113 POL1_62_C01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_C01_A002 5', mRNA sequence
Length = 715
Score = 630 bits (318), Expect = e-179
Identities = 469/511 (91%), Gaps = 9/511 (1%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcg-ccgtcatcaatctcctgctgcaggtccttggggtcc 280
||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 576 aagcggaggggatctcgacctcnaccatcatcgatctcctgctgcaggtccttggggtcc 517
Query: 281 ttgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccg 340
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 ttgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccg 457
Query: 341 gccaactccttggccatggacc-tgttcct-catggtcctggcgatctcgacgacgt-cg 397
|||| ||||||||||||||||| || || ||||||| ||||||||||||| | || ||
Sbjct: 456 gccatctccttggccatggaccctgggccggcatggtcttggcgatctcgacaatgttcg 397
Query: 398 tcgagg--ctga-tgttgccgc--tgtgcttgatgttcttgaccttcttccggtccctct 452
|||||| |||| ||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct: 396 tcgaggggctgaatgttgccccactgtgcttgatgttcttgaccttcttcctgtccctct 337
Query: 453 cgggctccttgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttgg 512
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 336 cgggctccttgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttgg 277
Query: 513 cctggcggttctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccg 572
|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 276 cctgccggttctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcgg 217
Query: 573 tctccttggcgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttgg 632
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 216 tctccttggcgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttgg 157
Query: 633 gcgccagggacgacgccgcgccgacctcgccgcccgtcacccggacgaagacctccacca 692
| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 156 gtgccagcgacgacgccgcgccgacctcgcctcccgtcacgcggacgaagacctccacca 97
Query: 693 cctgcgacgggtcgagcttgggcggcatggc 723
|||| || ||||| | |||||||||||||||
Sbjct: 96 cctgagatgggtccaacttgggcggcatggc 66
>gb|CD227698.1|CD227698 CCC1_53_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_B08_A007 3', mRNA sequence
Length = 592
Score = 624 bits (315), Expect = e-177
Identities = 369/387 (95%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 387 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 328
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 327 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 268
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 267 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 208
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 207 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 148
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 147 tgagcgccttgatgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggt 88
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 87 tctggacggtgagcttgacggtgacgcggaggcccttccagtccttggccgtctccttgg 28
Query: 582 cgatgtcctcgccgatcttcttcgggg 608
|||||||||| ||||||||||| ||||
Sbjct: 27 cgatgtcctctccgatcttcttggggg 1
>gb|BG049446.1|BG049446 OV1_20_A11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 618 bits (312), Expect = e-175
Identities = 387/412 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 414 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 355
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 354 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 295
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 294 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 235
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 234 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 175
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 174 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 115
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 114 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 55
Query: 582 cgatgtcctcgccgatcttcttcggggagagcccgagcgggccgatcttggg 633
|||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 54 cgatgtcctcaccgatcttcttcggggagagaccgagcgggccgatcttggg 3
>gb|BG050143.1|BG050143 FM1_67_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 394
Score = 579 bits (292), Expect = e-163
Identities = 339/355 (95%)
Strand = Plus / Minus
Query: 369 tcatggtcctggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgt 428
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 394 tcatggtcttggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttaatgt 335
Query: 429 tcttgaccttcttccggtccctctcgggctccttgagcgccttgatgacgagcgcggcgg 488
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcttgaccttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgcggcgg 275
Query: 489 cggaggggacgacggagaccttggcctggcggttctggacggtgagcttgacggtgacgc 548
||||||| |||||||||||||||||||| | |||||| || |||||||||||||||||||
Sbjct: 274 cggagggcacgacggagaccttggcctgcctgttctgtaccgtgagcttgacggtgacgc 215
Query: 549 gcaggcccttccagtccttggccgtctccttggcgatgtcctcgccgatcttcttcgggg 608
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaggcccttccagtccttcgccgtctccttggcgatgtcctcgccgatcttcttcgggg 155
Query: 609 agagcccgagcgggccgatcttgggcgccagggacgacgccgcgccgacctcgccgcccg 668
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 154 agaggccgagcgggccgatcttgggcgccagggangacgccgcgcccacctccccgcccg 95
Query: 669 tcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcggcatggc 723
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 94 tcacgcggacgaagacctccaccacctgcgacgggtcgagcttcggcggcatggc 40
>gb|CN124864.1|CN124864 RHOH1_7_H09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H09_A002 3', mRNA sequence
Length = 598
Score = 577 bits (291), Expect = e-163
Identities = 366/391 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 395 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 336
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 335 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 276
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||| |
Sbjct: 275 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacctcgtcaa 216
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 215 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 156
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||
Sbjct: 155 tgagcgccttgatgacaagcgccccggcggagggaacgacggaaaccttggcctgtcggt 96
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 95 tctggacggtgagcttgacggtgacccggaggcccttccagtccttggccgtctccttgg 36
Query: 582 cgatgtcctcgccgatcttcttcggggagag 612
|||||||||| || |||||||| ||||||||
Sbjct: 35 cgatgtcctctccaatcttcttgggggagag 5
>gb|AW565949.1|AW565949 LG1_354_A12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 571 bits (288), Expect = e-161
Identities = 360/384 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 384 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 325
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 265
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 264 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 205
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 145
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 144 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 85
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 84 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 25
Query: 582 cgatgtcctcgccgatcttcttcg 605
|||||||||| |||||||||||||
Sbjct: 24 cgatgtcctcaccgatcttcttcg 1
>gb|AW925050.1|AW925050 WS1_74_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 571 bits (288), Expect = e-161
Identities = 360/384 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 392 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 333
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 273
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 272 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 213
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 212 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 153
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 152 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 93
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 92 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 33
Query: 582 cgatgtcctcgccgatcttcttcg 605
|||||||||| |||||||||||||
Sbjct: 32 cgatgtcctcaccgatcttcttcg 9
>gb|CF490031.1|CF490031 POL1_62_C01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_C01_A002 3', mRNA sequence
Length = 585
Score = 569 bits (287), Expect = e-160
Identities = 362/387 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 387 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 328
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 268
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | |||||| |
Sbjct: 267 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcca 208
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 148
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 147 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 88
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 87 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 28
Query: 582 cgatgtcctcgccgatcttcttcgggg 608
|||||||||| ||||||||||||||||
Sbjct: 27 cgatgtcctcaccgatcttcttcgggg 1
>gb|CD226182.1|CD226182 CCC1_44_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_A04_A007 3', mRNA sequence
Length = 623
Score = 567 bits (286), Expect = e-160
Identities = 358/382 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 382 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 323
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 263
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 262 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 203
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 202 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 143
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 142 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 83
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttgg 581
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 82 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttgg 23
Query: 582 cgatgtcctcgccgatcttctt 603
|||||||||| |||||||||||
Sbjct: 22 cgatgtcctcaccgatcttctt 1
>gb|CL187762.1|CL187762 104_403_10901109_114_32459_085 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901109, DNA
sequence
Length = 582
Score = 539 bits (272), Expect = e-151
Identities = 344/368 (93%)
Strand = Plus / Plus
Query: 356 atggacctgttcctcatggtcctggcgatctcgacgacgtcgtcgaggctgatgttgccg 415
||||||||| || ||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 1 atggacctgggccgcatggtcttggcgatctcgacaatgtcgtcgaggctgatgttgcca 60
Query: 416 ctgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatg 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 ctgtgcttgatgttcttgaccttcttcctgtccctctcgggctccttgagcgccttgatg 120
Query: 476 acgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagc 535
|||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 121 acgagcgccgcggcggagggcacgacggagaccttggcctgccggttctgcacggtgagc 180
Query: 536 ttgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccg 595
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 181 ttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccg 240
Query: 596 atcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccg 655
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 241 atcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccg 300
Query: 656 acctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggc 715
|||||||| |||||||| ||||||||||||||||||||||| || ||||| | |||||||
Sbjct: 301 acctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaacttgggc 360
Query: 716 ggcatggc 723
||||||||
Sbjct: 361 ggcatggc 368
>gb|BF704767.1|BF704767 FM1_51_C06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 409
Score = 535 bits (270), Expect = e-150
Identities = 333/354 (94%)
Strand = Plus / Minus
Query: 370 catggtcctggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgcttgatgtt 429
||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct: 405 catggtcttggcgatctcgacaatgtcgtcgaggctgatgttgccactgtgcttgatgtt 346
Query: 430 cttgaccttcttccggtccctctcgggctccttgagcgccttgatgacgagcgcggcggc 489
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 345 cttgaccttcttcctgtccctctcgggctccttgagcgccttgatgacgagcgccgcggc 286
Query: 490 ggaggggacgacggagaccttggcctggcggttctggacggtgagcttgacggtgacgcg 549
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 285 ggagggcacgacggagaccttggcctgccggttctgcacggtgagcttgacggtgacgcg 226
Query: 550 caggcccttccagtccttggccgtctccttggcgatgtcctcgccgatcttcttcgggga 609
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 225 gaggcccttccagtccttggcggtctccttggcgatgtcctcaccgatcttcttcgggga 166
Query: 610 gagcccgagcgggccgatcttgggcgccagggacgacgccgcgccgacctcgccgcccgt 669
||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 165 gagaccgagcgggccgatcttgggtgccagcgacgacgccgcgccgacctcgcctcccgt 106
Query: 670 cacccggacgaagacctccaccacctgcgacgggtcgagcttgggcggcatggc 723
||| ||||||||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 105 cacgcggacgaagacctccaccacctgagatgggtccaacttgggcggcatggc 52
>gb|AW747659.1|AW747659 WS1_74_G10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 555
Score = 525 bits (265), Expect = e-147
Identities = 334/357 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 357 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 298
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 297 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 238
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 237 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 178
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 177 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 118
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggt 521
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 117 tgagcgccttgatgacgagcgccgcggcggagggcacgacggagaccttggcctgccggt 58
Query: 522 tctggacggtgagcttgacggtgacgcgcaggcccttccagtccttggccgtctcct 578
|||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 57 tctgcacggtgagcttgacggtgacgcggaggcccttccagtccttggcggtctcct 1
>gb|CL187296.1|CL187296 104_402_10900781_116_32436_019 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900781, DNA
sequence
Length = 648
Score = 513 bits (259), Expect = e-144
Identities = 298/311 (95%)
Strand = Plus / Plus
Query: 413 ccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttg 472
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctccttgagcgccttg 60
Query: 473 atgacgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtg 532
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 61 atgacgagcgccgcggcggagggaacgacggagaccttggcctgtcggttctggacggtg 120
Query: 533 agcttgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcg 592
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcttgacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctct 180
Query: 593 ccgatcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcg 652
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 181 ccgatcttcttgggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcg 240
Query: 653 ccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttg 712
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 ccgacctcgccgccggtcacgcggacgaacacctccaccacctgcgacgggtcgagcttg 300
Query: 713 ggcggcatggc 723
|||||||||||
Sbjct: 301 ggcggcatggc 311
>gb|BE356499.1|BE356499 DG1_125_G10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 330
Score = 492 bits (248), Expect = e-137
Identities = 303/320 (94%), Gaps = 1/320 (0%)
Strand = Plus / Minus
Query: 163 atgcagaacaa-caacacttcagcagcaccaatggaagtccccttcgatgtctagtcttc 221
||||||||||| || ||||||| |||||||||||| |||| ||||||||| |||||||||
Sbjct: 320 atgcagaacaaacaccacttcatcagcaccaatggtagtctccttcgatgcctagtcttc 261
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 aagcggatgggatctcgacctcgccgtcatcaatctcctgttgcaggtccttggggtcct 201
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgccgtctacggtgcatccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 141
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 140 ccatctccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 81
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct: 80 ggctgatgttgccgctgtgcttaatgttcttgaccttcttactgtccctctcgggctcct 21
Query: 462 tgagcgccttgatgacgagc 481
||||||||||||||||||||
Sbjct: 20 tgagcgccttgatgacgagc 1
>gb|AW924861.1|AW924861 WS1_72_G07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 440 bits (222), Expect = e-122
Identities = 261/274 (95%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 276 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 217
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 216 tgccgtcgacggtgcatccgacactgacgcaggtgccgagaatctccttgacggtgccgg 157
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 156 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcga 97
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 96 ggctgatgttgccgctgtgcttgatgttcttgaccttcttgcggtccctctcgggctcct 37
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggg 495
|||||||||||||||||||||| |||||||||||
Sbjct: 36 tgagcgccttgatgacgagcgccgcggcggaggg 3
>gb|BQ656052.1|BQ656052 pRC0368 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0368, mRNA sequence
Length = 461
Score = 410 bits (207), Expect = e-113
Identities = 270/291 (92%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 291 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 232
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 231 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 172
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 171 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 112
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 111 ggctgatattgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 52
Query: 462 tgagcgccttgatgacgagcgcggcggcggaggggacgacggagaccttgg 512
||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 51 tgagcgctttgatgacgagcgccgcggcggagggcacgacggagaccttgg 1
>gb|CW375799.1|CW375799 fsbb001f053f11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053f11, DNA
sequence
Length = 459
Score = 400 bits (202), Expect = e-110
Identities = 235/246 (95%)
Strand = Plus / Plus
Query: 478 gagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagctt 537
|||||||||||||||||| |||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1 gagcgcggcggcggagggcacgacggagaccttggcctgcctgttctgtaccgtgagctt 60
Query: 538 gacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccgat 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacggtgacgcggaggcccttccagtccttggccgtctccttggcgatgtcctcgccgat 120
Query: 598 cttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccgac 657
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 cttcttcggggagaggccgagcgggccgatcttgggcgccagggacgacgccgcgcccac 180
Query: 658 ctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcgg 717
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 ctccccgcccgtcacgcggacgaagacctccaccacctgcgacgggtcgagcttcggcgg 240
Query: 718 catggc 723
||||||
Sbjct: 241 catggc 246
>gb|CL165793.1|CL165793 104_361_10808905_114_31820_121 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808905, DNA
sequence
Length = 720
Score = 387 bits (195), Expect = e-105
Identities = 228/239 (95%)
Strand = Plus / Plus
Query: 485 gcggcggaggggacgacggagaccttggcctggcggttctggacggtgagcttgacggtg 544
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5 gcggcggagggaacgacggagaccttggcctgtcggttctggacggtgagcttgacggtg 64
Query: 545 acgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccgatcttcttc 604
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 65 acgcggaggcccttccagtccttggccgtctccttggcgatgtcctctccgatcttcttg 124
Query: 605 ggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccgacctcgccg 664
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 125 ggggagagaccgagcgggccgatcttgggggccagcgacgacgccgcgccgacctcgccg 184
Query: 665 cccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcggcatggc 723
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccggtcacgcggacgaacacctccaccacctgcgacgggtcgagcttgggcggcatggc 243
>gb|BF656536.1|BF656536 FM1_51_C06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 460
Score = 385 bits (194), Expect = e-105
Identities = 245/262 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 262 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 203
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 202 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgccgg 143
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| ||||||||||||||||||| || ||||||| ||||||||||||| | ||||||||
Sbjct: 142 ccatctccttggccatggacctgggccgcatggtcttggcgatctcgacaatgtcgtcga 83
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgaccttcttccggtccctctcgggctcct 461
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 82 ggctgatgttgccactgtgcttgatgttcttgaccttcttcctgtccctctcgggctcct 23
Query: 462 tgagcgccttgatgacgagcgc 483
||||||||||||||||||||||
Sbjct: 22 tgagcgccttgatgacgagcgc 1
>gb|CW311467.1|CW311467 104_801_11470249_116_36281_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470249, DNA
sequence
Length = 702
Score = 367 bits (185), Expect = e-099
Identities = 236/253 (93%)
Strand = Plus / Minus
Query: 471 tgatgacgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacgg 530
||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||
Sbjct: 696 tgatgacgagcgccgcggcggagggcacgacgtagaccttggcctgccggttctgcacgg 637
Query: 531 tgagcttgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcct 590
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 636 tgagcttgacggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcct 577
Query: 591 cgccgatcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccg 650
| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 576 caccgatcttcttcggggagagaccgagcgggccgatcttgggtgccagcgacgacgccg 517
Query: 651 cgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagct 710
||||||||||||| |||||||| ||||||||||||||||||||||| || ||||| | ||
Sbjct: 516 cgccgacctcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtccaact 457
Query: 711 tgggcggcatggc 723
|||||||||||||
Sbjct: 456 tgggcggcatggc 444
>gb|CF772218.1|CF772218 DSBF1_30_H03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_30_H03_A010 3', mRNA sequence
Length = 421
Score = 305 bits (154), Expect = 3e-081
Identities = 199/214 (92%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 214 aagcggacggtatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtcct 155
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
|||||||||||| ||| ||||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 154 tgccgtcgacggggcatccgacactgacgcaggtgccgaaaatctccttgacggggccgg 95
Query: 342 ccaactccttggccatggacctgttcctcatggtcctggcgatctcgacgacgtcgtcga 401
||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| |
Sbjct: 94 ccatttccttggccatggacctgggcctcatggtcttggcgatctcgacgacgtcgtcaa 35
Query: 402 ggctgatgttgccgctgtgcttgatgttcttgac 435
||||||||||||||||||||||||||||||||||
Sbjct: 34 ggctgatgttgccgctgtgcttgatgttcttgac 1
>gb|BE366223.1|BE366223 PI1_31_A07.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 174
Score = 228 bits (115), Expect = 6e-058
Identities = 154/167 (92%)
Strand = Plus / Minus
Query: 539 acggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccgatc 598
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 174 acggtgacgcggaggcccttccagtccttggcggtctccttggcgatgtcctcaccgatc 115
Query: 599 ttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccgacc 658
|| || |||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct: 114 ttatttggggagagaccgagcgggccgatcttgggtgccagcgacgacgccgcgcagacc 55
Query: 659 tcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtc 705
||||| |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 54 tcgcctcccgtcacgcggacgaagacctccaccacctgagatgggtc 8
>gb|AI724349.1|AI724349 RHIZ1_33_B10.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 335
Score = 168 bits (85), Expect = 5e-040
Identities = 109/117 (93%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 117 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtcct 58
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgc 338
|||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 57 tgccatcaacggtgcacccaacgctgacgcaggtcccgaggatctccttgacggtgc 1
>gb|BE356498.1|BE356498 DG1_125_G11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 104
Score = 127 bits (64), Expect = 2e-027
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 319 gaggatctccttgacggtgccggccaactccttggccatggacctgttcctcatggtcct 378
||||||||||||||||| |||||||| |||||||||||||||||| |||||||| | |
Sbjct: 104 gaggatctccttgacggagccggccatgtccttggccatggacctgagcctcatggactt 45
Query: 379 ggcgatctcgacgacgtcgtcgaggctgatgttgccgctgtgct 422
||||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 44 ggcgatctcaacgacatcctcgaggctgatgttgccgctgtgct 1
>gb|BE356434.1|BE356434 DG1_125_G10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 144
Score = 121 bits (61), Expect = 1e-025
Identities = 73/77 (94%)
Strand = Plus / Minus
Query: 647 gccgcgccgacctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcg 706
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138 gccgcgcccacctccccgcccgtcacgcggacgaagacctccaccacctgcgacgggtcg 79
Query: 707 agcttgggcggcatggc 723
||||| |||||||||||
Sbjct: 78 agcttcggcggcatggc 62
>gb|AW746508.1|AW746508 WS1_53_G03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 279
Score = 117 bits (59), Expect = 1e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 225 cggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtccttgc 284
||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 80 cggacgggatctccacctcgccgtcgtcaatctcctgctgcaagtccttggggtccttgc 21
Query: 285 cgtcgacggtgcacccgac 303
||||||||| ||| |||||
Sbjct: 20 cgtcgacggggcatccgac 2
>gb|AI724932.1|AI724932 RHIZ1_31_E03.y3_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 228
Score = 95.6 bits (48), Expect = 5e-018
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 163 atgcagaacaa-caacacttcagcagcaccaatggaagtccccttcgatgtctagtcttc 221
||||||||||| || |||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct: 80 atgcagaacaaacaccacttcagcagcaccaatggtagtctccttcgatgcctagtcttc 21
Query: 222 aagcggacgggatctcgacc 241
|||| || ||||||||||||
Sbjct: 20 aagctgatgggatctcgacc 1
Score = 75.8 bits (38), Expect = 5e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 59 acaaagatacggtggtaacattgaggtctctcacaagatatcactaacatagctagac 116
|||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 182 acaaagatgtggtagtaaaattgaggtctctcacaagataacactaacatagctagac 125
>gb|AI724732.1|AI724732 RHIZ1_26_D06.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 233
Score = 93.7 bits (47), Expect = 2e-017
Identities = 125/149 (83%), Gaps = 4/149 (2%)
Strand = Plus / Minus
Query: 73 gtaacattgaggtctctcacaagatatcactaacatagctagacnnnnnnntagatggaa 132
|||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 154 gtaaaattgaggtctctcacaagataacactaacatagctagac--aaaaatagatggaa 97
Query: 133 -cacgttgcttgaaaaaggtacatcgacggcatgcagaac-aacaacacttcagcagcac 190
||| |||||| |||||||||| | | ||||||||| |||| ||||||||||||||
Sbjct: 96 tcacattgctttggcaaggtacatcagcagaatgcagaacaaacaccacttcagcagcac 37
Query: 191 caatggaagtccccttcgatgtctagtct 219
|||||| |||| ||||||||| |||||||
Sbjct: 36 caatggtagtctccttcgatgcctagtct 8
>gb|BZ332746.1|BZ332746 hx30d05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx30d05 5', DNA sequence
Length = 458
Score = 87.7 bits (44), Expect = 1e-015
Identities = 108/128 (84%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccaggga-cgacgccgcgccg 655
||||||||||| | || || |||||||| |||||||| |||||||| | |||||| |||
Sbjct: 1 tcttcttcgggaaaaggccaagcgggccaatcttgggggccagggaacaacgccgggccc 60
Query: 656 acctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggc 715
|| || |||||||| || ||||| || ||||||||||||||| ||||||| ||||| |||
Sbjct: 61 acttccccgcccgtaacgcggacaaaaacctccaccacctgcaacgggtcaagcttcggc 120
Query: 716 ggcatggc 723
|| |||||
Sbjct: 121 ggaatggc 128
>gb|BE366283.1|BE366283 PI1_31_A07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 124
Score = 85.7 bits (43), Expect = 5e-015
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||| ||
Sbjct: 63 aagcggaggggatctcgacctcaccatcatcgatctcctgctgcaggtccttggggtact 4
Query: 282 tgc 284
|||
Sbjct: 3 tgc 1
>gb|CN124944.1|CN124944 RHOH1_7_H08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_H08_A002 5', mRNA sequence
Length = 256
Score = 85.7 bits (43), Expect = 5e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 669 tcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcggcatggc 723
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcacgcggacgaacccctccaccacctgcgacgggtcgagcttgggcggcatggc 202
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 377,347
Number of Sequences: 832831
Number of extensions: 377347
Number of successful extensions: 147559
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147360
Number of HSP's gapped (non-prelim): 195
length of query: 733
length of database: 491,359,669
effective HSP length: 20
effective length of query: 713
effective length of database: 474,703,049
effective search space: 338463273937
effective search space used: 338463273937
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)