BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127628.1|CN127628 RHOH1_24_C12.b1_A002 Acid- and alkal... 668 0.0
gb|CN124070.1|CN124070 RHOH1_2_A09.g1_A002 Acid- and alkali... 640 0.0
gb|BG049317.1|BG049317 OV1_18_D10.g1_A002 Ovary 1 (OV1) Sor... 599 e-169
gb|CN129227.1|CN129227 RHOH1_34_E11.b3_A002 Acid- and alkal... 589 e-166
gb|CN123998.1|CN123998 RHOH1_2_A09.b1_A002 Acid- and alkali... 567 e-160
gb|BG932995.1|BG932995 DG1_69_H05.g1_A002 Dark Grown 1 (DG1... 440 e-121
gb|CD231994.1|CD231994 SS1_31_E11.b1_A012 Salt-stressed see... 424 e-117
gb|CD233911.1|CD233911 SS1_5_B11.b1_A012 Salt-stressed seed... 355 6e-096
gb|BE361086.1|BE361086 DG1_69_H05.b1_A002 Dark Grown 1 (DG1... 313 2e-083
gb|CW390257.1|CW390257 fsbb001f075n12f0 Sorghum methylation... 305 5e-081
gb|CN129314.1|CN129314 RHOH1_34_E11.g1_A002 Acid- and alkal... 264 2e-068
gb|CN127707.1|CN127707 RHOH1_24_C12.g3_A002 Acid- and alkal... 230 2e-058
gb|CW038580.1|CW038580 104_270_10505004_115_30386 Sorghum m... 228 9e-058
gb|CW029341.1|CW029341 104_256_10499619_114_30399 Sorghum m... 224 1e-056
gb|CW458790.1|CW458790 fsbb001f205d22f0 Sorghum methylation... 224 1e-056
gb|CW165207.1|CW165207 104_573_11152383_148_36473_056 Sorgh... 208 8e-052
gb|CW342347.1|CW342347 104_844_11486824_116_36180_062 Sorgh... 184 1e-044
gb|CW342348.1|CW342348 104_844_11486824_148_36179_062 Sorgh... 184 1e-044
gb|CW110613.1|CW110613 104_483_11103812_148_34522_072 Sorgh... 167 3e-039
gb|BZ628246.1|BZ628246 ih58g10.g1 WGS-SbicolorF (DH5a methy... 141 2e-031
gb|CW029342.1|CW029342 104_256_10499619_116_30400 Sorghum m... 141 2e-031
gb|CW458791.1|CW458791 fsbb001f205d22k0 Sorghum methylation... 141 2e-031
gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorgh... 52 1e-004
gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorgh... 52 1e-004
gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation... 52 1e-004
gb|CW204789.1|CW204789 104_632_11186735_116_37060_082 Sorgh... 50 4e-004
gb|BZ628245.1|BZ628245 ih58g10.b1 WGS-SbicolorF (DH5a methy... 48 0.002
gb|CW038579.1|CW038579 104_270_10505004_114_30385 Sorghum m... 48 0.002
gb|CW108645.1|CW108645 104_480_11097636_116_34496_042 Sorgh... 48 0.002
gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Me... 48 0.002
gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) So... 48 0.002
gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed see... 48 0.002
gb|CF431462.1|CF431462 NIT1_7_A03.g1_A002 Nitrogen-deficien... 48 0.002
gb|BG052581.1|BG052581 RHIZ2_25_C09.g1_A003 Rhizome2 (RHIZ2... 46 0.007
gb|CB924610.1|CB924610 ABA1_1_C01.b1_A012 Abscisic acid-tre... 46 0.007
gb|CD208086.1|CD208086 HS1_31_E06.b1_A012 Heat-shocked seed... 46 0.007
gb|CD230338.1|CD230338 SS1_43_H07.b1_A012 Salt-stressed see... 46 0.007
gb|CN138826.1|CN138826 OX1_14_E07.b1_A002 Oxidatively-stres... 46 0.007
gb|CN143427.1|CN143427 WOUND1_16_E08.b1_A002 Wounded leaves... 46 0.007
gb|CN144829.1|CN144829 WOUND1_25_E06.b2_A002 Wounded leaves... 46 0.007
gb|CN145795.1|CN145795 WOUND1_35_G08.b1_A002 Wounded leaves... 46 0.007
gb|CN148093.1|CN148093 WOUND1_54_D09.b1_A002 Wounded leaves... 46 0.007
gb|CN148717.1|CN148717 WOUND1_58_H04.b1_A002 Wounded leaves... 46 0.007
gb|CX615873.1|CX615873 GABR1_24_B10.b1_A002 GA- or brassino... 46 0.007
gb|CX617521.1|CX617521 GABR1_34_E12.b1_A002 GA- or brassino... 46 0.007
gb|CW041475.1|CW041475 104_275_10506567_114_30284 Sorghum m... 40 0.43
gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorgh... 40 0.43
gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (L... 40 0.43
gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (L... 40 0.43
gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1)... 40 0.43
gb|AW744827.1|AW744827 LG1_384_D09.g1_A002 Light Grown 1 (L... 40 0.43
gb|AW922651.1|AW922651 DG1_20_B09.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|AW923243.1|AW923243 DG1_50_B11.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|AW923628.1|AW923628 DG1_56_E12.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE356472.1|BE356472 DG1_125_D03.g1_A002 Dark Grown 1 (DG... 40 0.43
gb|BE356746.1|BE356746 DG1_12_B04.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE357387.1|BE357387 DG1_15_B06.b2_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE358119.1|BE358119 DG1_24_H05.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE358884.1|BE358884 DG1_32_G02.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE359233.1|BE359233 DG1_39_G12.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE359750.1|BE359750 DG1_56_E12.g2_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE360002.1|BE360002 DG1_60_H01.g2_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE360562.1|BE360562 DG1_64_C07.b1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE361214.1|BE361214 DG1_70_H03.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE361473.1|BE361473 DG1_72_G02.g1_A002 Dark Grown 1 (DG1... 40 0.43
gb|BE363478.1|BE363478 WS1_63_C10.g1_A002 Water-stressed 1 ... 40 0.43
gb|BG158722.1|BG158722 RHIZ2_44_D05.g1_A003 Rhizome2 (RHIZ2... 40 0.43
gb|BG464390.1|BG464390 EM1_69_B10.g1_A002 Embryo 1 (EM1) So... 40 0.43
gb|BG557199.1|BG557199 EM1_43_H09.g1_A002 Embryo 1 (EM1) So... 40 0.43
gb|BG557200.1|BG557200 EM1_43_H10.g1_A002 Embryo 1 (EM1) So... 40 0.43
gb|CD461465.1|CD461465 SA1_32_D07.b1_A002 Salicylic acid-tr... 40 0.43
gb|CF430559.1|CF430559 NIT1_3_G08.b1_A002 Nitrogen-deficien... 40 0.43
gb|CF433098.1|CF433098 NIT1_25_G09.b1_A002 Nitrogen-deficie... 40 0.43
gb|CN124461.1|CN124461 RHOH1_5_A02.b1_A002 Acid- and alkali... 40 0.43
gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkal... 40 0.43
gb|CX614275.1|CX614275 GABR1_13_C10.b1_A002 GA- or brassino... 40 0.43
gb|CX614453.1|CX614453 GABR1_14_E02.b1_A002 GA- or brassino... 40 0.43
gb|CX615129.1|CX615129 GABR1_18_G09.b1_A002 GA- or brassino... 40 0.43
gb|CX616148.1|CX616148 GABR1_26_D10.b1_A002 GA- or brassino... 40 0.43
gb|CX620938.1|CX620938 GABR1_55_B01.b1_A002 GA- or brassino... 40 0.43
gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nucle... 40 0.43
>gb|CN127628.1|CN127628 RHOH1_24_C12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_C12_A002 3', mRNA sequence
Length = 731
Score = 668 bits (337), Expect = 0.0
Identities = 439/473 (92%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 473 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 414
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
||||||||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 413 gcccgttcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 354
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 353 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtccttgatgg 294
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 293 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 234
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgccattctcagtaacataaa 567
|||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 233 cctggtcaagtgttgcggattgatcatcttcatcatccatgccattctcagtaatataaa 174
Query: 568 ttgctggattattgtacttcttcgctatataattaagtgacttatgaaggccccaaggaa 627
|| ||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||
Sbjct: 173 ttactggattattgtatttcttcactatataattaagtactttacgaaggccccaaggaa 114
Query: 628 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 54
Query: 688 ctattcgctccatttgttgcacttggtagaaataaacatcatttggattttgg 740
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 53 ctattctctccatttgttgcacttggtagaaataaacatcatctggattttgg 1
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatg 86
|||||||||||||||| ||||||||||
Sbjct: 669 tacatttcagctagtgttggatcaatg 643
>gb|CN124070.1|CN124070 RHOH1_2_A09.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_2_A09_A002 5', mRNA sequence
Length = 626
Score = 640 bits (323), Expect = 0.0
Identities = 398/423 (94%)
Strand = Plus / Minus
Query: 689 tattcgctccatttgttgcacttggtagaaataaacatcatttggattttggagatgagc 748
||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 626 tattctctccatttgttgcacttggtagaaataaacatcatctggattttggtgatgagc 567
Query: 749 aatgagtcttgaagtataatgatttactccaacaaaatcaattttgttcctcatgaactc 808
||||||||| |||||||||||||| | ||||| |||||||||||||||||| ||||| ||
Sbjct: 566 aatgagtctcgaagtataatgattcagtccaataaaatcaattttgttcctgatgaattc 507
Query: 809 tttatctttctctgaaaaggttggaagatcactgcccagtcgctgacgcatgctttctgg 868
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 506 tttatctttctctgagaaggttggaagatcactgcccagtcgttgacgcatgctttctgg 447
Query: 869 gtaatcaccaaaatatattggatctaggtaccatccaagttgaaagtcaagcctccgctg 928
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 446 gtaatcaccaaaatatatcggatctaggtaccatccaagttgaaagtcaatcctccgttg 387
Query: 929 tgcagcaatttggtcttccacattttcagaaaatggctctgtacattcgcaatcaacaac 988
||||||||||||||||||| | ||||||||||| ||||||| ||||| || || |||||
Sbjct: 386 tgcagcaatttggtcttccgctttttcagaaaaaggctctgcccattcacagtccacaac 327
Query: 989 caaccctacttcaccaccttgtgcagccttgaattttcttctataaacatcaacagcagc 1048
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaagcctacttcaccaccttgtgcagccttgaattttcttctataaacatcaacagcagc 267
Query: 1049 agcatgagccaagatttggtgatgggcagccaagtaacatctagcagtttcaccttggca 1108
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 266 agcatgagccaagatttggtgatgggcagccaagtaacatcttgcagtttcaccttggca 207
Query: 1109 tcc 1111
|||
Sbjct: 206 tcc 204
>gb|BG049317.1|BG049317 OV1_18_D10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 684
Score = 599 bits (302), Expect = e-169
Identities = 404/438 (92%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 438 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 379
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 378 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 319
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 318 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtccttgatgg 259
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 258 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 199
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgccattctcagtaacataaa 567
|||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 198 cctggtcaagtgttgcggattgatcatcttcatcatccatgccattctcagtaatataaa 139
Query: 568 ttgctggattattgtacttcttcgctatataattaagtgacttatgaaggccccaaggaa 627
|| ||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||
Sbjct: 138 ttactggattattgtatttcttcactatataattaagtactttacgaaggccccaaggaa 79
Query: 628 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 19
Query: 688 ctattcgctccatttgtt 705
|||||| |||||||||||
Sbjct: 18 ctattctctccatttgtt 1
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 634 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 581
>gb|CN129227.1|CN129227 RHOH1_34_E11.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_E11_A002 3', mRNA sequence
Length = 809
Score = 589 bits (297), Expect = e-166
Identities = 402/437 (91%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 437 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 378
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||| ||||||| |||||||
Sbjct: 377 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgcagcccatagcccact 318
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 317 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtccttgatgg 258
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 257 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 198
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgccattctcagtaacataaa 567
|||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 197 cctggtcaagtgttgcggattgatcatcttcatcatccatgccattctcagtaatataaa 138
Query: 568 ttgctggattattgtacttcttcgctatataattaagtgacttatgaaggccccaaggaa 627
|| ||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||
Sbjct: 137 ttactggattattgtatttcttcactatataattaagtactttacgaaggccccaaggaa 78
Query: 628 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 18
Query: 688 ctattcgctccatttgt 704
|||||| ||||||||||
Sbjct: 17 ctattctctccatttgt 1
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 633 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 580
>gb|CN123998.1|CN123998 RHOH1_2_A09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_2_A09_A002 3', mRNA sequence
Length = 799
Score = 567 bits (286), Expect = e-160
Identities = 391/426 (91%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 426 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 367
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 366 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 307
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |
Sbjct: 306 caaagttgtccaggaatgaccacgcaaagtacccacggatgtcagctccgtccttgatgg 247
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 246 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 187
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgccattctcagtaacataaa 567
|||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 186 cctggtcaagtgttgcggattgatcatcttcatcatccatgccattctcagtaatataaa 127
Query: 568 ttgctggattattgtacttcttcgctatataattaagtgacttatgaaggccccaaggaa 627
|| ||||||||||||| |||||| |||||||||||||| ||| ||||||||||||| |
Sbjct: 126 ttactggattattgtatttcttcactatataattaagtactttacgaaggccccaaggta 67
Query: 628 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ctatgaaaagccattcagatgcagccctttcaccaattttttcaccactattccattttt 7
Query: 688 ctattc 693
||||||
Sbjct: 6 ctattc 1
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 622 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 569
>gb|BG932995.1|BG932995 DG1_69_H05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 581
Score = 440 bits (222), Expect = e-121
Identities = 309/338 (91%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 345 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 286
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 285 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 226
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 225 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtccttgatgg 166
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 165 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 106
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgccattctcagtaacataaa 567
|||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 105 cctggtcaagtgttgcggattgatcatcttcatcatccatgccattctcagtaatataaa 46
Query: 568 ttgctggattattgtacttcttcgctatataattaagt 605
|| ||||||||||||| |||||| ||||||||||||||
Sbjct: 45 ttactggattattgtatttcttcactatataattaagt 8
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 541 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 488
>gb|CD231994.1|CD231994 SS1_31_E11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_31_E11_A012 3', mRNA sequence
Length = 636
Score = 424 bits (214), Expect = e-117
Identities = 301/330 (91%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 330 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 271
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 270 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 211
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 210 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtccttgatgg 151
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 150 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 91
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgccattctcagtaacataaa 567
|||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct: 90 cctggtcaagtgttgcggattgatcatcttcatcatccatgccattctcagtaatataaa 31
Query: 568 ttgctggattattgtacttcttcgctatat 597
|| ||||||||||||| |||||| ||||||
Sbjct: 30 ttactggattattgtatttcttcactatat 1
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 526 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 473
>gb|CD233911.1|CD233911 SS1_5_B11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_5_B11_A012 3', mRNA sequence
Length = 659
Score = 355 bits (179), Expect = 6e-096
Identities = 257/283 (90%)
Strand = Plus / Minus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 298 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 239
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 238 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 179
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcg 447
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 178 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtccttgatgg 119
Query: 448 cttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtcgtttagga 507
|||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct: 118 cttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtcatttagga 59
Query: 508 cctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|||||||||| || ||||||||||| || || |||||||||||
Sbjct: 58 cctggtcaagtgtcgcggattgatcatcttcatcatccatgcc 16
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 494 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 441
>gb|BE361086.1|BE361086 DG1_69_H05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 625
Score = 313 bits (158), Expect = 2e-083
Identities = 197/210 (93%)
Strand = Plus / Minus
Query: 902 tccaagttgaaagtcaagcctccgctgtgcagcaatttggtcttccacattttcagaaaa 961
||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||
Sbjct: 625 tccaagttgaaagtcaatcctccgttgtgcagcaatttggtcttccgctttttcagaaaa 566
Query: 962 tggctctgtacattcgcaatcaacaaccaaccctacttcaccaccttgtgcagccttgaa 1021
||||||| ||||| || || ||||| || |||||||||||||||||||||||||||||
Sbjct: 565 aggctctgcccattcacagtccacaacgaagcctacttcaccaccttgtgcagccttgaa 506
Query: 1022 ttttcttctataaacatcaacagcagcagcatgagccaagatttggtgatgggcagccaa 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttcttctataaacatcaacagcagcagcatgagccaagatttggtgatgggcagccaa 446
Query: 1082 gtaacatctagcagtttcaccttggcatcc 1111
||||||||| ||||||||||||||||||||
Sbjct: 445 gtaacatcttgcagtttcaccttggcatcc 416
>gb|CW390257.1|CW390257 fsbb001f075n12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075n12, DNA
sequence
Length = 332
Score = 305 bits (154), Expect = 5e-081
Identities = 187/198 (94%)
Strand = Plus / Minus
Query: 703 gttgcacttggtagaaataaacatcatttggattttggagatgagcaatgagtcttgaag 762
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct: 332 gttgcacttggtagaaataaacatcatctggattttggggatgagcaatgagtctcgaag 273
Query: 763 tataatgatttactccaacaaaatcaattttgttcctcatgaactctttatctttctctg 822
|||||||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 272 tataatgattcagtccaataaaatcaattttgttcctgatgaattctttatctttctctg 213
Query: 823 aaaaggttggaagatcactgcccagtcgctgacgcatgctttctgggtaatcaccaaaat 882
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 212 agaaggttggaagatcactgcccagtcgttgacgcatgctttctgggtaatcaccaaaat 153
Query: 883 atattggatctaggtacc 900
|||| |||||||||||||
Sbjct: 152 atatcggatctaggtacc 135
>gb|CN129314.1|CN129314 RHOH1_34_E11.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_34_E11_A002 5', mRNA sequence
Length = 805
Score = 264 bits (133), Expect = 2e-068
Identities = 169/181 (93%)
Strand = Plus / Minus
Query: 931 cagcaatttggtcttccacattttcagaaaatggctctgtacattcgcaatcaacaacca 990
||||||||||||||||| | ||||||||||| ||||||| ||||| || || ||||| |
Sbjct: 805 cagcaatttggtcttccgctttttcagaaaaaggctctgcccattcacagtccacaacga 746
Query: 991 accctacttcaccaccttgtgcagccttgaattttcttctataaacatcaacagcagcag 1050
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 agcctacttcaccaccttgtgcagccttgaattttcttctataaacatcaacagtagcag 686
Query: 1051 catgagccaagatttggtgatgggcagccaagtaacatctagcagtttcaccttggcatc 1110
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 catgagccaagatttggtgatgggcagccaagtaacatcttgcagtttcaccttggcatc 626
Query: 1111 c 1111
|
Sbjct: 625 c 625
>gb|CN127707.1|CN127707 RHOH1_24_C12.g3_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_24_C12_A002 5', mRNA sequence
Length = 804
Score = 230 bits (116), Expect = 2e-058
Identities = 125/128 (97%)
Strand = Plus / Minus
Query: 984 acaaccaaccctacttcaccaccttgtgcagccttgaattttcttctataaacatcaaca 1043
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaacgaagcctacttcaccaccttgtgcagccttgaattttcttctataaacatcaaca 742
Query: 1044 gcagcagcatgagccaagatttggtgatgggcagccaagtaacatctagcagtttcacct 1103
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 gcagcagcatgagccaagatttggtgatgggcagccaagtaacatcttgcagtttcacct 682
Query: 1104 tggcatcc 1111
||||||||
Sbjct: 681 tggcatcc 674
>gb|CW038580.1|CW038580 104_270_10505004_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505004, DNA
sequence
Length = 708
Score = 228 bits (115), Expect = 9e-058
Identities = 160/175 (91%)
Strand = Plus / Minus
Query: 266 gccagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctgga 325
||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 647 gccagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctgga 588
Query: 326 cagcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgccca 385
|||||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 587 cagcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagccca 528
Query: 386 ctcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 527 ctcaaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtcc 473
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 358 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 299
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 298 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 248
>gb|CW029341.1|CW029341 104_256_10499619_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499619, DNA
sequence
Length = 728
Score = 224 bits (113), Expect = 1e-056
Identities = 158/173 (91%)
Strand = Plus / Plus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 282 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 341
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 342 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 401
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 402 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtcc 454
Score = 133 bits (67), Expect = 4e-029
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 569 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 628
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
|||| |||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 629 atttacgacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 679
Score = 40.1 bits (20), Expect = 0.43
Identities = 50/58 (86%), Gaps = 4/58 (6%)
Strand = Plus / Plus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
||||||||||||| || |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 86 tacatttcagctactgttggatcaatgacag--act--aggtataggcaggaagcaca 139
>gb|CW458790.1|CW458790 fsbb001f205d22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205d22, DNA
sequence
Length = 654
Score = 224 bits (113), Expect = 1e-056
Identities = 158/173 (91%)
Strand = Plus / Plus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 44 cagcctcgcccttcaggaagcgcgagaaccacagggccgatgctttaggatgcctggaca 103
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 104 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 163
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 164 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtcc 216
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 331 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 390
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 391 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 441
>gb|CW165207.1|CW165207 104_573_11152383_148_36473_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152383, DNA
sequence
Length = 721
Score = 208 bits (105), Expect = 8e-052
Identities = 156/173 (90%)
Strand = Plus / Plus
Query: 268 cagcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggaca 327
||||||||||||| || |||||| ||||||||| ||||||||||| || ||||||||||
Sbjct: 74 cagcctcgcccttcaggaagcgcttgaaccacagggccgatgctttaggatgcctggaca 133
Query: 328 gcccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccact 387
|||| |||||||| || ||||||||||| || |||||||||||||||||||| |||||||
Sbjct: 134 gcccattcttgtaatcgacgtaaactataccaaacctcttggtgtagcccatagcccact 193
Query: 388 cgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 194 caaagttgtccaggaatgaccacgcaaagtacccacggatatcagctccgtcc 246
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 361 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 420
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 421 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 471
>gb|CW342347.1|CW342347 104_844_11486824_116_36180_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486824, DNA
sequence
Length = 711
Score = 184 bits (93), Expect = 1e-044
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 432
Query: 1075 cagccaagtaacatctagcagtttcaccttggcatcc 1111
|||||||||||||||| ||||||||||||||||||||
Sbjct: 433 cagccaagtaacatcttgcagtttcaccttggcatcc 469
>gb|CW342348.1|CW342348 104_844_11486824_148_36179_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486824, DNA
sequence
Length = 763
Score = 184 bits (93), Expect = 1e-044
Identities = 96/97 (98%)
Strand = Plus / Minus
Query: 1015 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttgaattttcttctataaacatcaacagcagcagcatgagccaagatttggtgatggg 386
Query: 1075 cagccaagtaacatctagcagtttcaccttggcatcc 1111
|||||||||||||||| ||||||||||||||||||||
Sbjct: 385 cagccaagtaacatcttgcagtttcaccttggcatcc 349
>gb|CW110613.1|CW110613 104_483_11103812_148_34522_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103812, DNA
sequence
Length = 644
Score = 167 bits (84), Expect = 3e-039
Identities = 120/132 (90%)
Strand = Plus / Plus
Query: 309 gctttcgggtgcctggacagcccgttcttgtagtccacgtaaactatgccgaacctcttg 368
||||| || |||||||||||||| |||||||| || ||||||||||| || |||||||||
Sbjct: 1 gctttaggatgcctggacagcccattcttgtaatcgacgtaaactataccaaacctcttg 60
Query: 369 gtgtagcccattgcccactcgaagttgtccaggaacgaccacgcaaagtacccgcggaca 428
||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| |
Sbjct: 61 gtgtagcccatagcccactcaaagttgtccaggaatgaccacgcaaagtacccacggata 120
Query: 429 tcagctccgtcc 440
||||||||||||
Sbjct: 121 tcagctccgtcc 132
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 247 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 306
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 307 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 357
>gb|BZ628246.1|BZ628246 ih58g10.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih58g10 5', DNA sequence
Length = 675
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 459 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 400
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 399 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 349
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 669 acgtaaactataccaaacctcttggtgtagcccatagcccactcaaagttgtccaggaat 610
Query: 405 gaccacgcaaagtacccgcggacatcagctccgtcc 440
||||||||||||||||| |||| |||||||||||||
Sbjct: 609 gaccacgcaaagtacccacggatatcagctccgtcc 574
>gb|CW029342.1|CW029342 104_256_10499619_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499619, DNA
sequence
Length = 787
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 679 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 620
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 619 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 569
>gb|CW458791.1|CW458791 fsbb001f205d22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205d22, DNA
sequence
Length = 671
Score = 141 bits (71), Expect = 2e-031
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 440 cttgatcgcttgcgcaactgaattgaggtaccctttgaagtaaccgaccctcgtcgtgtc 499
|||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 510 cttgatggcttgtgcaactgaattgaggtatcctttgaagtaaccgactcttgtcgtgtc 451
Query: 500 gtttaggacctggtcaagcgttgcggattgatcgtcctcttcatccatgcc 550
||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct: 450 atttaggacctggtcaagtgttgcggattgatcatcttcatcatccatgcc 400
Score = 69.9 bits (35), Expect = 5e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 394 tgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
|||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 671 tgtccaggaatgaccacgcaaagtacccacggatatcagctccgtcc 625
>gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 599
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 381 gcccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||||| | ||||||||| |||||
Sbjct: 551 gcccactcgaagttgtccagcagcgaccacgcgaagta 514
>gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137466, DNA
sequence
Length = 694
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 381 gcccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||||| | ||||||||| |||||
Sbjct: 484 gcccactcgaagttgtccagcagcgaccacgcgaagta 521
>gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077d18, DNA
sequence
Length = 682
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 381 gcccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||||| | ||||||||| |||||
Sbjct: 417 gcccactcgaagttgtccagcagcgaccacgcgaagta 380
>gb|CW204789.1|CW204789 104_632_11186735_116_37060_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186735, DNA
sequence
Length = 643
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 382 cccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||| |||||||| ||||||||
Sbjct: 257 cccactcgaagttgtccatcaacgaccatgcaaagta 293
>gb|BZ628245.1|BZ628245 ih58g10.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih58g10 5', DNA sequence
Length = 730
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Plus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 538 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 591
>gb|CW038579.1|CW038579 104_270_10505004_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505004, DNA
sequence
Length = 672
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Plus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 578 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 631
>gb|CW108645.1|CW108645 104_480_11097636_116_34496_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097636, DNA
sequence
Length = 635
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Minus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 157 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 104
>gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 584
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||||| |||||||| |||||
Sbjct: 203 ccactcgaagttgtccaggagggaccacgcgaagta 168
>gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
||||||||||||||| || | |||||||||||||||
Sbjct: 233 ccactcgaagttgtcgagcagcgaccacgcaaagta 198
>gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_D01_A012 3', mRNA sequence
Length = 552
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||||| |||||||| |||||
Sbjct: 167 ccactcgaagttgtccaggagggaccacgcgaagta 132
>gb|CF431462.1|CF431462 NIT1_7_A03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_7_A03_A002 5', mRNA sequence
Length = 224
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/58 (87%), Gaps = 4/58 (6%)
Strand = Plus / Plus
Query: 60 tacatttcagctagtgctggatcaatggcagtcactagaggtataggcaggtagcaca 117
|||||||||||||||| |||||||||| ||| ||| ||||||||||||| ||||||
Sbjct: 116 tacatttcagctagtgttggatcaatgacag--act--aggtataggcaggaagcaca 169
>gb|BG052581.1|BG052581 RHIZ2_25_C09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 409
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 262 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 208
>gb|CB924610.1|CB924610 ABA1_1_C01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_1_C01_A012 3', mRNA sequence
Length = 622
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 375 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 321
>gb|CD208086.1|CD208086 HS1_31_E06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_31_E06_A012 3', mRNA sequence
Length = 481
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 220 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 166
>gb|CD230338.1|CD230338 SS1_43_H07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_43_H07_A012 3', mRNA sequence
Length = 531
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 270 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 216
>gb|CN138826.1|CN138826 OX1_14_E07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_E07_A002 3', mRNA sequence
Length = 794
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 573 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 519
>gb|CN143427.1|CN143427 WOUND1_16_E08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_E08_A002 3', mRNA sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 461 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 407
>gb|CN144829.1|CN144829 WOUND1_25_E06.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_E06_A002 3', mRNA sequence
Length = 791
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 570 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 516
>gb|CN145795.1|CN145795 WOUND1_35_G08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_35_G08_A002 3', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 570 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 516
>gb|CN148093.1|CN148093 WOUND1_54_D09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_54_D09_A002 3', mRNA sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 351 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 297
>gb|CN148717.1|CN148717 WOUND1_58_H04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_H04_A002 3', mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
||||| || |||||||| | || |||||||||| | | |||||||||||||||||
Sbjct: 287 acgtagacaatgccgaaacgctcggtgtagcccctagaccactcgaagttgtcca 233
>gb|CX615873.1|CX615873 GABR1_24_B10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_24_B10_A002 3', mRNA sequence
Length = 589
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 350 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 296
>gb|CX617521.1|CX617521 GABR1_34_E12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_34_E12_A002 3', mRNA sequence
Length = 777
Score = 46.1 bits (23), Expect = 0.007
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtcca 399
|||||||| |||||||| | || ||||||||| | | |||||||||||||||||
Sbjct: 538 acgtaaacgatgccgaaacgctcggtgtagccactagaccactcgaagttgtcca 484
>gb|CW041475.1|CW041475 104_275_10506567_114_30284 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506567, DNA
sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 383 ccactcgaagttgtccagga 402
||||||||||||||||||||
Sbjct: 510 ccactcgaagttgtccagga 529
>gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189560, DNA
sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.43
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
||||| || |||||||| | || ||||||||| | | ||| |||||||||||||| |
Sbjct: 551 acgtagacgatgccgaaacgctcggtgtagccgctggaccattcgaagttgtccagcaga 610
Query: 405 gaccacgcaaagtacccgcg 424
|||||||| ||||| |||||
Sbjct: 611 gaccacgcgaagtagccgcg 630
>gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 178
Score = 40.1 bits (20), Expect = 0.43
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
||||| || |||||||| | || ||||||||| | | ||| |||||||||||||| |
Sbjct: 110 acgtagacgatgccgaaacgctcggtgtagccgctggaccattcgaagttgtccagcaga 51
Query: 405 gaccacgcaaagtacccgcg 424
|||||||| ||||| |||||
Sbjct: 50 gaccacgcgaagtagccgcg 31
>gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 415
Score = 40.1 bits (20), Expect = 0.43
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
||||| || |||||||| | || ||||||||| | | ||| |||||||||||||| |
Sbjct: 148 acgtagacgatgccgaaacgctcggtgtagccgctggaccattcgaagttgtccagcaga 89
Query: 405 gaccacgcaaagtacccgcg 424
|||||||| ||||| |||||
Sbjct: 88 gaccacgcgaagtagccgcg 69
>gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 40.1 bits (20), Expect = 0.43
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
||||| || |||||||| | || ||||||||| | | ||| |||||||||||||| |
Sbjct: 149 acgtagacgatgccgaaacgctcggtgtagccgctggaccattcgaagttgtccagcaga 90
Query: 405 gaccacgcaaagtacccgcg 424
|||||||| ||||| |||||
Sbjct: 89 gaccacgcgaagtagccgcg 70
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 337,252
Number of Sequences: 832831
Number of extensions: 337252
Number of successful extensions: 88486
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88363
Number of HSP's gapped (non-prelim): 112
length of query: 1118
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1098
effective length of database: 474,703,049
effective search space: 521223947802
effective search space used: 521223947802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)