BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716368.2.1
(1356 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW450105.1|CW450105 fsbb001f188j04f0 Sorghum methylation... 718 0.0
gb|BG932946.1|BG932946 DG1_69_C11.g1_A002 Dark Grown 1 (DG1... 678 0.0
gb|BE361070.1|BE361070 DG1_69_C11.b1_A002 Dark Grown 1 (DG1... 672 0.0
gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation... 666 0.0
gb|CF427028.1|CF427028 PH1_3_A04.b1_A002 Phosphorous-defici... 618 e-175
gb|CN126050.1|CN126050 RHOH1_14_H04.g1_A002 Acid- and alkal... 609 e-172
gb|BE361244.1|BE361244 DG1_70_C10.g1_A002 Dark Grown 1 (DG1... 585 e-165
gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorgh... 529 e-148
gb|CN123868.1|CN123868 RHOH1_1_F04.b1_A002 Acid- and alkali... 527 e-148
gb|BE361132.1|BE361132 DG1_70_C10.b1_A002 Dark Grown 1 (DG1... 511 e-143
gb|CN150998.1|CN150998 WOUND1_72_G04.g1_A002 Wounded leaves... 500 e-139
gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seed... 496 e-138
gb|CN123957.1|CN123957 RHOH1_1_F04.g1_A002 Acid- and alkali... 492 e-137
gb|CD210199.1|CD210199 HS1_57_F11.g1_A012 Heat-shocked seed... 456 e-126
gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation... 440 e-121
gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/c... 404 e-111
gb|CN131820.1|CN131820 OX1_2_B01.g1_A002 Oxidatively-stress... 404 e-111
gb|CD221738.1|CD221738 CCC1_70_G11.g1_A007 Callus culture/c... 400 e-109
gb|CD221765.1|CD221765 CCC1_70_E11.g1_A007 Callus culture/c... 400 e-109
gb|CW253167.1|CW253167 104_716_11224935_148_35100_054 Sorgh... 394 e-108
gb|CD220530.1|CD220530 CCC1_67_F12.g1_A007 Callus culture/c... 387 e-105
gb|CW219575.1|CW219575 104_653_11196855_148_37142_052 Sorgh... 355 7e-096
gb|CD206277.1|CD206277 HS1_21_C02.g1_A012 Heat-shocked seed... 321 1e-085
gb|CN125086.1|CN125086 RHOH1_8_F08.g1_A002 Acid- and alkali... 313 2e-083
gb|CN128815.1|CN128815 RHOH1_31_F05.g1_A002 Acid- and alkal... 313 2e-083
gb|CN130578.1|CN130578 RHOH1_42_A01.g1_A002 Acid- and alkal... 313 2e-083
gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/c... 303 2e-080
gb|CN128214.1|CN128214 RHOH1_27_G06.g1_A002 Acid- and alkal... 299 4e-079
gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/c... 295 5e-078
gb|CN131734.1|CN131734 OX1_2_B01.b1_A002 Oxidatively-stress... 287 1e-075
gb|CW456331.1|CW456331 fsbb001f201j24f0 Sorghum methylation... 276 5e-072
gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum h... 276 5e-072
gb|CF427145.1|CF427145 PH1_3_A04.g1_A002 Phosphorous-defici... 272 8e-071
gb|CN125960.1|CN125960 RHOH1_14_H04.b1_A002 Acid- and alkal... 250 3e-064
gb|CD462620.1|CD462620 ETH1_38_D10.g1_A002 Ethylene-treated... 226 4e-057
gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkali... 222 7e-056
gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinol... 222 7e-056
gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated... 218 1e-054
gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated... 218 1e-054
gb|CW368677.1|CW368677 fsbb001f042l22k0 Sorghum methylation... 216 4e-054
gb|CD432508.1|CD432508 ETH1_30_C04.g1_A002 Ethylene-treated... 216 4e-054
gb|CD206178.1|CD206178 HS1_21_C02.b1_A012 Heat-shocked seed... 214 2e-053
gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adap... 212 6e-053
gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorgh... 212 6e-053
gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorgh... 212 6e-053
gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation... 212 6e-053
gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation... 212 6e-053
gb|CN128978.1|CN128978 RHOH1_32_F11.g1_A002 Acid- and alkal... 196 4e-048
gb|CW219574.1|CW219574 104_653_11196855_116_37141_052 Sorgh... 190 2e-046
gb|CD233659.1|CD233659 SS1_3_G02.g1_A012 Salt-stressed seed... 190 2e-046
gb|BE357973.1|BE357973 DG1_23_H03.g1_A002 Dark Grown 1 (DG1... 163 5e-038
gb|CD230073.1|CD230073 SS1_40_F09.g1_A012 Salt-stressed see... 163 5e-038
gb|CD231887.1|CD231887 SS1_30_D03.g1_A012 Salt-stressed see... 163 5e-038
gb|CX607644.1|CX607644 ANR1_29_H11.g1_A002 Anaerobic roots ... 163 5e-038
gb|BG159498.1|BG159498 OV2_5_B04.b1_A002 Ovary 2 (OV2) Sorg... 161 2e-037
gb|CW133289.1|CW133289 104_517_11116679_148_34812_096 Sorgh... 159 8e-037
gb|CW450106.1|CW450106 fsbb001f188j04k0 Sorghum methylation... 157 3e-036
gb|CX613500.1|CX613500 GABR1_8_B11.g1_A002 GA- or brassinol... 155 1e-035
gb|CD230584.1|CD230584 SS1_44_B08.g1_A012 Salt-stressed see... 147 3e-033
gb|BF657533.1|BF657533 OV2_23_D07.b1_A002 Ovary 2 (OV2) Sor... 145 1e-032
gb|CW376699.1|CW376699 fsbb001f054l06k0 Sorghum methylation... 141 2e-031
gb|CD428756.1|CD428756 ETH1_36_H11.b1_A002 Ethylene-treated... 141 2e-031
gb|CN126537.1|CN126537 RHOH1_17_F06.g1_A002 Acid- and alkal... 141 2e-031
gb|BE357900.1|BE357900 DG1_23_H03.b1_A002 Dark Grown 1 (DG1... 137 3e-030
gb|CD233638.1|CD233638 SS1_3_G02.b1_A012 Salt-stressed seed... 135 1e-029
gb|BG053374.1|BG053374 RHIZ2_26_G10.b1_A003 Rhizome2 (RHIZ2... 115 1e-023
gb|CD231800.1|CD231800 SS1_30_D03.b1_A012 Salt-stressed see... 107 3e-021
gb|CW456332.1|CW456332 fsbb001f201j24k0 Sorghum methylation... 103 4e-020
gb|CN126679.1|CN126679 RHOH1_18_C05.g1_A002 Acid- and alkal... 103 4e-020
gb|BG560595.1|BG560595 RHIZ2_59_D03.b1_A003 Rhizome2 (RHIZ2... 101 2e-019
gb|BF656823.1|BF656823 OV2_23_D07.g1_A002 Ovary 2 (OV2) Sor... 100 7e-019
gb|CN128898.1|CN128898 RHOH1_32_F11.b1_A002 Acid- and alkal... 98 3e-018
gb|CW217016.1|CW217016 104_650_11195430_148_37131_029 Sorgh... 96 1e-017
gb|CW239035.1|CW239035 104_697_11217438_148_37508_029 Sorgh... 96 1e-017
gb|BG739561.1|BG739561 EM1_82_D06.b1_A002 Embryo 1 (EM1) So... 92 2e-016
gb|CD230488.1|CD230488 SS1_44_B08.b1_A012 Salt-stressed see... 92 2e-016
gb|CL189510.1|CL189510 104_406_10902348_114_32468_034 Sorgh... 88 2e-015
gb|CW204077.1|CW204077 104_631_11186348_116_37095_066 Sorgh... 88 2e-015
gb|CW314900.1|CW314900 104_805_11472073_116_35817_003 Sorgh... 88 2e-015
gb|CW402615.1|CW402615 fsbb001f093p05f0 Sorghum methylation... 88 2e-015
gb|CW477921.1|CW477921 fsbb001f235i02k0 Sorghum methylation... 86 1e-014
gb|CN131672.1|CN131672 OX1_1_D03.g1_A002 Oxidatively-stress... 86 1e-014
gb|BI141047.1|BI141047 IP1_42_E02.b1_A002 Immature pannicle... 84 4e-014
gb|BI141202.1|BI141202 IP1_44_E02.b1_A002 Immature pannicle... 84 4e-014
gb|CN128146.1|CN128146 RHOH1_27_G06.b1_A002 Acid- and alkal... 80 6e-013
gb|BG159238.1|BG159238 OV2_5_B04.g1_A002 Ovary 2 (OV2) Sorg... 78 2e-012
gb|BG159128.1|BG159128 RHIZ2_28_C04.b1_A003 Rhizome2 (RHIZ2... 76 9e-012
gb|CD229975.1|CD229975 SS1_40_F09.b1_A012 Salt-stressed see... 74 4e-011
gb|CW390339.1|CW390339 fsbb001f075p07k0 Sorghum methylation... 72 1e-010
gb|CN150921.1|CN150921 WOUND1_72_G04.b1_A002 Wounded leaves... 68 2e-009
gb|CW239034.1|CW239034 104_697_11217438_116_37509_029 Sorgh... 66 9e-009
gb|BI099614.1|BI099614 IP1_44_E02.g1_A002 Immature pannicle... 64 4e-008
gb|CW054609.1|CW054609 104_295_10516628_114_30186 Sorghum m... 60 6e-007
gb|CW099293.1|CW099293 104_466_11003472_148_34379_094 Sorgh... 60 6e-007
gb|CW140342.1|CW140342 104_530_11135731_116_34912_066 Sorgh... 60 6e-007
gb|CW454419.1|CW454419 fsbb001f198n16f0 Sorghum methylation... 60 6e-007
gb|CF432901.1|CF432901 NIT1_19_D07.g1_A002 Nitrogen-deficie... 60 6e-007
gb|CX608067.1|CX608067 ANR1_32_A06.g1_A002 Anaerobic roots ... 60 6e-007
gb|CW184221.1|CW184221 104_600_11165037_148_36686_089 Sorgh... 56 9e-006
gb|CW192723.1|CW192723 104_615_11179181_116_36773_027 Sorgh... 54 3e-005
gb|CW217015.1|CW217015 104_650_11195430_116_37132_029 Sorgh... 54 3e-005
gb|CW433266.1|CW433266 fsbb001f148g13k0 Sorghum methylation... 54 3e-005
gb|BG048584.1|BG048584 OV1_14_E03.b1_A002 Ovary 1 (OV1) Sor... 52 1e-004
gb|BG158255.1|BG158255 EM1_9_D12.b1_A002 Embryo 1 (EM1) Sor... 52 1e-004
gb|CD219865.1|CD219865 CCC1_59_D05.g1_A007 Callus culture/c... 52 1e-004
gb|CD226829.1|CD226829 CCC1_48_E12.b1_A007 Callus culture/c... 52 1e-004
gb|CL189511.1|CL189511 104_406_10902348_116_32472_034 Sorgh... 50 5e-004
gb|CW314901.1|CW314901 104_805_11472073_148_35821_003 Sorgh... 50 5e-004
gb|CW488645.1|CW488645 fsbb001f265c16f0 Sorghum methylation... 50 5e-004
gb|BZ339450.1|BZ339450 ic32c10.b1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|CW241492.1|CW241492 104_700_11218800_148_37543_086 Sorgh... 48 0.002
gb|CW369801.1|CW369801 fsbb001f044g11f0 Sorghum methylation... 48 0.002
gb|BG049025.1|BG049025 OV1_22_C07.g1_A002 Ovary 1 (OV1) Sor... 48 0.002
gb|BG049047.1|BG049047 OV1_22_E11.g1_A002 Ovary 1 (OV1) Sor... 48 0.002
gb|BG049103.1|BG049103 OV1_23_C12.g1_A002 Ovary 1 (OV1) Sor... 48 0.002
gb|BG047628.1|BG047628 OV1_26_C01.b1_A002 Ovary 1 (OV1) Sor... 46 0.008
gb|CN146289.1|CN146289 WOUND1_39_H03.b1_A002 Wounded leaves... 46 0.008
gb|BG048731.1|BG048731 OV1_22_C07.b1_A002 Ovary 1 (OV1) Sor... 44 0.034
gb|BG048752.1|BG048752 OV1_22_E11.b1_A002 Ovary 1 (OV1) Sor... 44 0.034
gb|BG048811.1|BG048811 OV1_23_C12.b1_A002 Ovary 1 (OV1) Sor... 44 0.034
gb|CD219585.1|CD219585 CCC1_57_C04.g1_A007 Callus culture/c... 44 0.034
gb|CD226852.1|CD226852 CCC1_48_E12.g1_A007 Callus culture/c... 44 0.034
gb|CW054610.1|CW054610 104_295_10516628_115_30179 Sorghum m... 42 0.13
gb|CW140343.1|CW140343 104_530_11135731_148_34916_066 Sorgh... 42 0.13
gb|CW417495.1|CW417495 fsbb001f120i17f0 Sorghum methylation... 42 0.13
gb|CW417496.1|CW417496 fsbb001f120i17k0 Sorghum methylation... 42 0.13
gb|CW428522.1|CW428522 fsbb001f141e10k0 Sorghum methylation... 42 0.13
gb|CW454420.1|CW454420 fsbb001f198n16k0 Sorghum methylation... 42 0.13
gb|CW460183.1|CW460183 fsbb001f207e13k0 Sorghum methylation... 42 0.13
gb|BG412450.1|BG412450 OV2_34_C12.g1_A002 Ovary 2 (OV2) Sor... 42 0.13
gb|BG412749.1|BG412749 OV2_34_C12.b1_A002 Ovary 2 (OV2) Sor... 42 0.13
gb|CF480054.1|CF480054 POL1_63_A12.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF480285.1|CF480285 POL1_64_G06.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF480333.1|CF480333 POL1_65_D03.b1_A002 Pollen Sorghum b... 42 0.13
gb|CF480411.1|CF480411 POL1_65_D03.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF480457.1|CF480457 POL1_65_H06.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF480661.1|CF480661 POL1_67_D07.b1_A002 Pollen Sorghum b... 42 0.13
gb|CF480711.1|CF480711 POL1_67_A06.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF480730.1|CF480730 POL1_67_C02.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF481055.1|CF481055 POL1_69_E05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF481066.1|CF481066 POL1_69_F07.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF481186.1|CF481186 POL1_70_B02.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF481234.1|CF481234 POL1_70_F07.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF481418.1|CF481418 POL1_71_H03.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF481566.1|CF481566 POL1_72_E12.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF482510.1|CF482510 POL1_7_A01.g1_A002 Pollen Sorghum bi... 42 0.13
gb|CF482685.1|CF482685 POL1_8_B05.g1_A002 Pollen Sorghum bi... 42 0.13
gb|CF483231.1|CF483231 POL1_12_E10.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF483250.1|CF483250 POL1_12_H10.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF483330.1|CF483330 POL1_21_B07.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF484048.1|CF484048 POL1_2_G04.g1_A002 Pollen Sorghum bi... 42 0.13
gb|CF484303.1|CF484303 POL1_4_A10.g1_A002 Pollen Sorghum bi... 42 0.13
gb|CF484478.1|CF484478 POL1_25_C05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF484676.1|CF484676 POL1_26_G05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF484688.1|CF484688 POL1_26_H05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF484704.1|CF484704 POL1_27_A11.b1_A002 Pollen Sorghum b... 42 0.13
gb|CF485134.1|CF485134 POL1_29_D08.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF485187.1|CF485187 POL1_30_A04.b1_A002 Pollen Sorghum b... 42 0.13
gb|CF485662.1|CF485662 POL1_32_G11.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486443.1|CF486443 POL1_37_E10.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486514.1|CF486514 POL1_38_D08.b1_A002 Pollen Sorghum b... 42 0.13
gb|CF486570.1|CF486570 POL1_38_B03.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486596.1|CF486596 POL1_38_D06.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486598.1|CF486598 POL1_38_D08.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486737.1|CF486737 POL1_39_A11.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486753.1|CF486753 POL1_39_C04.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486763.1|CF486763 POL1_39_D02.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF486803.1|CF486803 POL1_39_G10.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF487066.1|CF487066 POL1_41_C03.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF487232.1|CF487232 POL1_42_C05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF487409.1|CF487409 POL1_43_D04.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF487428.1|CF487428 POL1_43_F02.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF487622.1|CF487622 POL1_44_H12.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF487896.1|CF487896 POL1_46_C05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488078.1|CF488078 POL1_47_D10.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488105.1|CF488105 POL1_47_G06.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488363.1|CF488363 POL1_49_A10.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488401.1|CF488401 POL1_49_E12.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488671.1|CF488671 POL1_51_B05.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488708.1|CF488708 POL1_51_E07.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488732.1|CF488732 POL1_51_G09.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF488833.1|CF488833 POL1_52_B08.g1_A002 Pollen Sorghum b... 42 0.13
gb|CF489435.1|CF489435 POL1_57_C07.g1_A002 Pollen Sorghum b... 42 0.13
gb|CX607987.1|CX607987 ANR1_32_A06.b1_A002 Anaerobic roots ... 42 0.13
>gb|CW450105.1|CW450105 fsbb001f188j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188j04, DNA
sequence
Length = 648
Score = 718 bits (362), Expect = 0.0
Identities = 446/474 (94%)
Strand = Plus / Plus
Query: 327 cttttcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccggga 386
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 175 cttttcaggggtagttgaccaaggaacggtaggccttgccgggcttccacgcggccggga 234
Query: 387 tggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcg 446
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 235 tggcgttgttggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcg 294
Query: 447 ctttgagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggag 506
|| |||| ||||||||||||||||||||||||| |||||||||||| ||||||| || |
Sbjct: 295 ctctgagtctcctgccgttgttgaggcgccacgtcgcgccccagttgagcgccatgggtg 354
Query: 507 tccagacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcct 566
|||| |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 355 tccacacgctgctgccggcctccatcaggtcgacggccttgaggtcgccgtcgtcgtcct 414
Query: 567 cgaactcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcga 626
|||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 415 cgaactcgatcagcacgtcgaagtagaacgggttcgcgccctggtacaccttgaacgcga 474
Query: 627 tgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 686
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cgttcacgccggggtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 534
Query: 687 cgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatgt 746
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 535 cgcggagcttgtcggccatgccgggccgcgccatggcgcccatgggggtgccgctcatgt 594
Query: 747 caaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgatta 800
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 595 caaagtgctcaacctcgccggggaacagatcgccaggggactggtcggtgatta 648
Score = 125 bits (63), Expect = 1e-026
Identities = 104/116 (89%), Gaps = 5/116 (4%)
Strand = Plus / Plus
Query: 118 tgaagtatcaaattaccggcatgatttgactaacaccgtcacacatcacttttggggact 177
||||| |||||||||| |||||||||||||| || || ||||||||||||| |||||||
Sbjct: 1 tgaagaatcaaattacaggcatgatttgactcacgccatcacacatcactt--ggggact 58
Query: 178 gcagagaccgtccagggagggaagaaggacattattctcttcttcaacctcctctt 233
|||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 59 gcagagaccgtccagggagggaagaacgcc---attctcttcttcaacctcctctt 111
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 268 ccgccgccactcgcaacacccggacgcacaatacacgccatccactt 314
|||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 131 ccgccgcctctcgcaacacccggacgcacattacacgccattcactt 177
>gb|BG932946.1|BG932946 DG1_69_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 678 bits (342), Expect = 0.0
Identities = 408/430 (94%)
Strand = Plus / Minus
Query: 327 cttttcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccggga 386
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 431 cttttcaggggtagttgaccaaggaacggtaggccttgccgggcttccacgcggccggga 372
Query: 387 tggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcg 446
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 tggcgttgttggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcg 312
Query: 447 ctttgagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggag 506
|| |||| ||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 311 ctctgagtctcctgccgttgttgaggcgccacgtcgcgccccagttgtgcgccatgggtg 252
Query: 507 tccagacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcct 566
|||| |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 251 tccacacgctgctgccggcctccatcaggtcgacggccttgaggtcgccgtcgtcgtcct 192
Query: 567 cgaactcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcga 626
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 191 cgaactcgatcagcacgtcgaagtagaacgggttcgcgccctggtccaccttgaacgcga 132
Query: 627 tgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 686
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cgttcacgccggggtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 72
Query: 687 cgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatgt 746
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 71 cgcggagcttgtcggccatgccgggccgcgccatggcgcccatggcggtgccgctcatgt 12
Query: 747 caaagtgctc 756
||||||||||
Sbjct: 11 caaagtgctc 2
Score = 161 bits (81), Expect = 2e-037
Identities = 152/174 (87%), Gaps = 5/174 (2%)
Strand = Plus / Minus
Query: 60 aaataagattctgtcttacctcaatcacagtagtatagcagtaaaactcaaatcgagatg 119
||||||| |||| |||| |||||| |||| |||||| || |||| |||||||||||||
Sbjct: 663 aaataagcttctctctttcctcaagtacaggagtatattagcaaaattcaaatcgagatg 604
Query: 120 aagtatcaaattaccggcatgatttgactaacaccgtcacacatcacttttggggactgc 179
||| |||||||||| |||||||||||||| || || ||||||||||| |||||||||||
Sbjct: 603 aagaatcaaattacaggcatgatttgactcacgccatcacacatcac--ttggggactgc 546
Query: 180 agagaccgtccagggagggaagaaggacattattctcttcttcaacctcctctt 233
|||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 545 agagaccgtccagggagggaagaacgcc---attctcttcttcaacctcctctt 495
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 268 ccgccgccactcgcaacacccggacgcacaatacacgccatccactt 314
|||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 475 ccgccgcctctcgcaacacccggacgcacattacacgccattcactt 429
>gb|BE361070.1|BE361070 DG1_69_C11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 672 bits (339), Expect = 0.0
Identities = 387/403 (96%)
Strand = Plus / Minus
Query: 669 tcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatggcgccca 728
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 655 tcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgcgccatggcgccca 596
Query: 729 tggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgccaggggact 788
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 595 tggcggtgccgctcatgtcaaagtgctcaacctcgccggggaacagatcgccaggggact 536
Query: 789 ggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgtgcatttca 848
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 535 ggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcttgcatttca 476
Query: 849 cctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcga 908
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 475 cctcgtagcaggcgccgcagccctcgccacccttgtacagtggcgtgctcccggcggcga 416
Query: 909 tcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgccgtcgc 968
||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 415 tcatcgagtcgaacggcttcttcccgacagcagtctggtagccgcacgcgccgccgtcgc 356
Query: 969 tcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccgg 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccgg 296
Query: 1029 ggccgtagacagtcggcgatggcgtgggtgtagctgtgtggtt 1071
||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 295 agccgtagacgatcggcgatggcctgggtgtagcagtgtggtt 253
Score = 190 bits (96), Expect = 2e-046
Identities = 181/211 (85%), Gaps = 15/211 (7%)
Strand = Plus / Minus
Query: 1077 tggcggccacaggcgccggcttgtagctgcccgtgaccggttttggcttcggcttgaccg 1136
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 238 tggccgccacaggcgccggcttgtagctg------accggttttggctttggcttgaccg 185
Query: 1137 ---------gccgcctgtagctgcccggcttcggcttgggtttgttgagctttcgggtgc 1187
||||||||| |||| ||||||| |||||||| ||| ||| ||||||| |||
Sbjct: 184 cagtcaccggccgcctgtggctggccggctttggcttgggcttgctgaactttcggttgc 125
Query: 1188 aagcaatggggctcactaggagtgagaggaccaccactgcagccagcagcaatgtccaaa 1247
| ||||||||||||||||||||||| |||||||||||||| |||| |||||| || ||||
Sbjct: 124 aggcaatggggctcactaggagtgacaggaccaccactgcggccaacagcaaagtgcaaa 65
Query: 1248 gcttcgccattgctgctgtttttaagctcga 1278
|||||||||||||||||||||||||||||||
Sbjct: 64 gcttcgccattgctgctgtttttaagctcga 34
>gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054l06, DNA
sequence
Length = 588
Score = 666 bits (336), Expect = 0.0
Identities = 476/523 (91%), Gaps = 6/523 (1%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 523 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 464
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 463 gttgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 404
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 403 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 344
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 343 cacgctgctgccggcctccatcaggtcgacggcgctgaggtcgccgtcgtcgtcctcgaa 284
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
|||||||||||||| ||||||| ||||||| |||||||| ||||||||||| |||| |||
Sbjct: 283 ctcgatgagcacgttgaagtagaacgggttggcgccctggtccaccttgaaggcgacgtt 224
Query: 631 gacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcg 690
||||||| ||||||||||||||||||||||||| ||| ||| | |||||||| |||||
Sbjct: 223 cacgccggggtacttgcacggcaccctcctgtactggaccctcacgacgccgccggcgcg 164
Query: 691 gagcttgtcggccatgccgggccgg------gccatggcgcccatggcggtgccgctcat 744
|| |||||||||||||||| ||| | ||||||||||||||||| |||||||||||
Sbjct: 163 gaccttgtcggccatgccgcgcccgggcttcgccatggcgcccatggccgtgccgctcat 104
Query: 745 gtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgat 804
||| |||||| |||||||||| |||||||||||||| |||||| |||| ||||| |||||
Sbjct: 103 gtcgaagtgcgcgacctcgcccgggaacagcccgcccggggacaggtccgtgatgacgat 44
Query: 805 ggtcacgggctggccggagcacgcggcgttggtcgtgcatttc 847
|||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 43 ggtcaccggctggccggagcacgccgcgttgctcgtgcatttc 1
>gb|CF427028.1|CF427028 PH1_3_A04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_A04_A002 3', mRNA sequence
Length = 622
Score = 618 bits (312), Expect = e-175
Identities = 381/404 (94%)
Strand = Plus / Minus
Query: 327 cttttcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccggga 386
||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 404 cttttcaggggtagttgaccaaggaacggtaggcctggccgggcttccacgcggccggga 345
Query: 387 tggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcg 446
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 344 tggcgttgttggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcg 285
Query: 447 ctttgagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggag 506
|| |||| ||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 284 ctctgagtctcctgccgttgttgaggcgccacgtcgcgccccagttgtgcgccatgggtg 225
Query: 507 tccagacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcct 566
|||| |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 224 tccacacgctgctgccggcctccatcaggtcgacggccttgaggtcgccgtcgtcgtcct 165
Query: 567 cgaactcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcga 626
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 164 cgaactcgatcagcacgtcgaagtagaacgggttcgcgccctggtccaccttgaacgcga 105
Query: 627 tgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 686
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cgttcacgccggggtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 45
Query: 687 cgcggagcttgtcggccatgccgggccgggccatggcgcccatg 730
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44 cgcggagcttgtcggccatgccgggccgcgccatggcgcccatg 1
Score = 149 bits (75), Expect = 8e-034
Identities = 119/132 (90%), Gaps = 5/132 (3%)
Strand = Plus / Minus
Query: 102 aaaactcaaatcgagatgaagtatcaaattaccggcatgatttgactaacaccgtcacac 161
|||| |||||||||||||||| |||||||||| |||||||||||||| || || ||||||
Sbjct: 594 aaaattcaaatcgagatgaagaatcaaattacaggcatgatttgactcacgccatcacac 535
Query: 162 atcacttttggggactgcagagaccgtccagggagggaagaaggacattattctcttctt 221
||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 534 atcac--ttggggactgcagagaccgtccagggagggaagaacgcc---attctcttctt 480
Query: 222 caacctcctctt 233
||||||||||||
Sbjct: 479 caacctcctctt 468
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 268 ccgccgccactcgcaacacccggacgcacaatacacgccatccactt 314
|||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 448 ccgccgcctctcgcaacacccggacgcacattacacgccattcactt 402
>gb|CN126050.1|CN126050 RHOH1_14_H04.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_14_H04_A002 5', mRNA sequence
Length = 799
Score = 609 bits (307), Expect = e-172
Identities = 488/549 (88%), Gaps = 6/549 (1%)
Strand = Plus / Minus
Query: 495 gcgccataggagtccagacgccgctgccggcctccatgaggtccacggcgctgaggtcgc 554
||||||| || ||||| |||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct: 799 gcgccatgggcgtccacacgctgctgccggcctccatcaggtcgacggcgctgaggtcgc 740
Query: 555 cgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttcgcgccctgatcca 614
||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||
Sbjct: 739 ngtcgtcgtcctcgaactcgatgagcacgttgaagtagaacgggttggcgccctggtcca 680
Query: 615 ccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctga 674
||||||| |||| ||| ||||||| ||||||||||||||||||||||||| ||| ||| |
Sbjct: 679 ccttgaaggcgacgttcacgccggggtacttgcacggcaccctcctgtactggaccctca 620
Query: 675 gcacgccgccagcgcggagcttgtcggccatgccgggccggg------ccatggcgccca 728
|||||||| ||||||| |||||||||||||||| ||| || ||||||||||||
Sbjct: 619 cgacgccgccggcgcggaccttgtcggccatgccgcgcccgggcttcgccatggcgccca 560
Query: 729 tggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgccaggggact 788
|||| |||||||||||||| |||||| |||||||||| |||||||||||||| ||||||
Sbjct: 559 tggccgtgccgctcatgtcgaagtgcgcgacctcgcccgggaacagcccgcccggggaca 500
Query: 789 ggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgtgcatttca 848
|||| ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct: 499 ggtccgtgatgacgatggtcaccggctggccggagcacgccgcgttgctcgtgcatttca 440
Query: 849 cctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcga 908
||||||||||||||||||||||||||||||||| ||| || |||| |||||| |||||||
Sbjct: 439 cctcgtagcaggcgccgcagccctcgcctcccccgtaaagcggcgcgctccccgcggcga 380
Query: 909 tcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgccgtcgc 968
||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||| || |
Sbjct: 379 tcatcgagtcgaacggctgcttcccgacggcggtctggtagccgcacgcgccgccttcac 320
Query: 969 tcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccgg 1028
||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 319 cgccgtcgccgttaggggcgccgtagtacgtggcgccggcgccggacagccagccgccgg 260
Query: 1029 ggccgtaga 1037
||| ||||
Sbjct: 259 agccataga 251
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 140 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 81
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 80 accactgcagccagcagtaatgtgcacagcttcgcc 45
>gb|BE361244.1|BE361244 DG1_70_C10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 585 bits (295), Expect = e-165
Identities = 358/379 (94%)
Strand = Plus / Minus
Query: 327 cttttcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccggga 386
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 379 cttttcaggggtagttgaccaaggaacggtaggccttgccgggcttccacgcggccggga 320
Query: 387 tggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcg 446
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 319 tggcgttgttggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcg 260
Query: 447 ctttgagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggag 506
|| |||| ||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 259 ctctgagtctcctgccgttgttgaggcgccacgtcgcgccccagttgtgcgccatgggtg 200
Query: 507 tccagacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcct 566
|||| |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 199 tccacacgctgctgccggcctccatcaggtcgacggccttgaggtcgccgtcgtcgtcct 140
Query: 567 cgaactcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcga 626
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 139 cgaactcgatcagcacgtcgaagtagaacgggttcgcgccctggtccaccttgaacgcga 80
Query: 627 tgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 686
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 cgttcacgccggggtacttgcacggcaccctcctgtacaggatcctgagcacgccgccag 20
Query: 687 cgcggagcttgtcggccat 705
|||||||||||||||||||
Sbjct: 19 cgcggagcttgtcggccat 1
Score = 161 bits (81), Expect = 2e-037
Identities = 152/174 (87%), Gaps = 5/174 (2%)
Strand = Plus / Minus
Query: 60 aaataagattctgtcttacctcaatcacagtagtatagcagtaaaactcaaatcgagatg 119
||||||| |||| |||| |||||| |||| |||||| || |||| |||||||||||||
Sbjct: 611 aaataagcttctctctttcctcaagtacaggagtatattagcaaaattcaaatcgagatg 552
Query: 120 aagtatcaaattaccggcatgatttgactaacaccgtcacacatcacttttggggactgc 179
||| |||||||||| |||||||||||||| || || ||||||||||| |||||||||||
Sbjct: 551 aagaatcaaattacaggcatgatttgactcacgccatcacacatcac--ttggggactgc 494
Query: 180 agagaccgtccagggagggaagaaggacattattctcttcttcaacctcctctt 233
|||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 493 agagaccgtccagggagggaagaacgcc---attctcttcttcaacctcctctt 443
Score = 69.9 bits (35), Expect = 6e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 268 ccgccgccactcgcaacacccggacgcacaatacacgccatccactt 314
|||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct: 423 ccgccgcctctcgcaacacccggacgcacattacacgccattcactt 377
>gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224935, DNA
sequence
Length = 674
Score = 529 bits (267), Expect = e-148
Identities = 351/379 (92%)
Strand = Plus / Plus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 271 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 330
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 331 gttgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 390
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 391 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 450
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 451 cacgctgctgccggcctccatcaggtcgacggcgctgaggtcgccgtcgtcgtcctcgaa 510
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
|||||||||||||| ||||||| ||||||| |||||||| ||||||||||| |||| |||
Sbjct: 511 ctcgatgagcacgttgaagtagaacgggttggcgccctggtccaccttgaaggcgacgtt 570
Query: 631 gacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcg 690
||||||| ||||||||||||||||||||||||| ||| ||| | |||||||| |||||
Sbjct: 571 cacgccggggtacttgcacggcaccctcctgtactggaccctcacgacgccgccggcgcg 630
Query: 691 gagcttgtcggccatgccg 709
|| ||||||||||||||||
Sbjct: 631 gaccttgtcggccatgccg 649
>gb|CN123868.1|CN123868 RHOH1_1_F04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_F04_A002 3', mRNA sequence
Length = 614
Score = 527 bits (266), Expect = e-148
Identities = 335/358 (93%)
Strand = Plus / Minus
Query: 327 cttttcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccggga 386
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 398 cttttcaggggtagttgaccaaggaacggtaggccttgccgggcttccacgcggccggga 339
Query: 387 tggcgttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcg 446
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 338 tggcgttgttggcgaccagcaccctgccggagtcggaggtgagccggaacccgaacggcg 279
Query: 447 ctttgagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggag 506
|| |||| ||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 278 ctctgagtctcctgccgttgttgaggcgccacgtcgcgccccagttgtgcgccatgggtg 219
Query: 507 tccagacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcct 566
|||| |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 218 tccacacgctgctgccggcctccatcaggtcgacggccttgaggtcgccgtcgtcgtcct 159
Query: 567 cgaactcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcga 626
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 158 cgaactcgatcagcacgtcgaagtagaacgggttcgcgccctggtccaccttgaacgcga 99
Query: 627 tgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgcc 684
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 cgttcacgccggggtacttgcacggcaccctcctgtacaggatcctgagcacgccgcc 41
Score = 141 bits (71), Expect = 2e-031
Identities = 118/132 (89%), Gaps = 5/132 (3%)
Strand = Plus / Minus
Query: 102 aaaactcaaatcgagatgaagtatcaaattaccggcatgatttgactaacaccgtcacac 161
|||| |||||||||||||||| |||||||||| |||||||||||||| || || ||||||
Sbjct: 588 aaaattcaaatcgagatgaagaatcaaattacaggcatgatttgactcacgccatcacac 529
Query: 162 atcacttttggggactgcagagaccgtccagggagggaagaaggacattattctcttctt 221
||||| |||||||||||| |||||||||||||||||||||| | | |||||||||||
Sbjct: 528 atcac--ttggggactgcaaagaccgtccagggagggaagaacgcc---attctcttctt 474
Query: 222 caacctcctctt 233
||||||||||||
Sbjct: 473 caacctcctctt 462
Score = 81.8 bits (41), Expect = 2e-013
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 776 ccgccaggggactggtcggtgattacgatggtcacgggctggccg 820
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ccgcccggggactggtcggtgattacgatggtcacgggctggccg 1
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 268 ccgccgccactcgcaacacccggacgcacaatacacgccatccactt 314
|||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct: 442 ccgccgcctctcgcaacacccggacgcacgttacacgccattcactt 396
>gb|BE361132.1|BE361132 DG1_70_C10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 511 bits (258), Expect = e-143
Identities = 300/314 (95%)
Strand = Plus / Minus
Query: 758 acctcgccggggaacagcccgccaggggactggtcggtgattacgatggtcacgggctgg 817
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acctcgccggggaacagatcgccaggggactggtcggtgattacgatggtcacgggctgg 507
Query: 818 ccggagcacgcggcgttggtcgtgcatttcacctcgtagcaggcgccgcagccctcgcct 877
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccggagcacgcggcgttggtcttgcatttcacctcgtagcaggcgccgcagccctcgcca 447
Query: 878 cccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctttccgacg 937
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 446 cccttgtacagtggcgtgctcccggcggcgatcatcgagtcgaacggcttcttcccgaca 387
Query: 938 gccgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtac 997
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcagtctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtac 327
Query: 998 gtggcgccggcgcctgacagccagccaccggggccgtagacagtcggcgatggcgtgggt 1057
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct: 326 gtggcgccggcgcctgacagccagccaccggagccgtagacgatcggcgatggcctgggt 267
Query: 1058 gtagctgtgtggtt 1071
||||| ||||||||
Sbjct: 266 gtagcagtgtggtt 253
Score = 190 bits (96), Expect = 2e-046
Identities = 181/211 (85%), Gaps = 15/211 (7%)
Strand = Plus / Minus
Query: 1077 tggcggccacaggcgccggcttgtagctgcccgtgaccggttttggcttcggcttgaccg 1136
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 238 tggccgccacaggcgccggcttgtagctg------accggttttggctttggcttgaccg 185
Query: 1137 ---------gccgcctgtagctgcccggcttcggcttgggtttgttgagctttcgggtgc 1187
||||||||| |||| ||||||| |||||||| ||| ||| ||||||| |||
Sbjct: 184 cagtcaccggccgcctgtggctggccggctttggcttgggcttgctgaactttcggttgc 125
Query: 1188 aagcaatggggctcactaggagtgagaggaccaccactgcagccagcagcaatgtccaaa 1247
| ||||||||||||||||||||||| |||||||||||||| |||| |||||| || ||||
Sbjct: 124 aggcaatggggctcactaggagtgacaggaccaccactgcggccaacagcaaagtgcaaa 65
Query: 1248 gcttcgccattgctgctgtttttaagctcga 1278
|||||||||||||||||||||||||||||||
Sbjct: 64 gcttcgccattgctgctgtttttaagctcga 34
>gb|CN150998.1|CN150998 WOUND1_72_G04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_G04_A002 5', mRNA sequence
Length = 735
Score = 500 bits (252), Expect = e-139
Identities = 413/467 (88%), Gaps = 6/467 (1%)
Strand = Plus / Minus
Query: 577 gagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgttgacgcc 636
|||||||| ||||||| ||||||| |||||||| ||||||||||| |||| ||| |||||
Sbjct: 735 gagcacgttgaagtagaacgggttggcgccctggtccaccttgaaggcgacgttcacgcc 676
Query: 637 ggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcggagctt 696
|| ||||||||||||||||||||||||| ||| ||| | |||||||| ||||||| |||
Sbjct: 675 ggggtacttgcacggcaccctcctgtactggaccctcacgacgccgccggcgcggacctt 616
Query: 697 gtcggccatgccgggccggg------ccatggcgcccatggcggtgccgctcatgtcaaa 750
||||||||||||| ||| || |||||||||||||||| |||||||||||||| ||
Sbjct: 615 gtcggccatgccgcgcccgggcttcgccatggcgcccatggccgtgccgctcatgtcgaa 556
Query: 751 gtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatggtcac 810
|||| |||||||||| |||||||||||||| |||||| |||| ||||| |||||||||||
Sbjct: 555 gtgcgcgacctcgcccgggaacagcccgcccggggacaggtccgtgatgacgatggtcac 496
Query: 811 gggctggccggagcacgcggcgttggtcgtgcatttcacctcgtagcaggcgccgcagcc 870
||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 495 cggctggccggagcacgccgcgttgctcgtgcatttctcctcgtagcaggcgccgcagcc 436
Query: 871 ctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctt 930
||||||||||||||| || |||| |||||| |||||||||||||||||||| |||| |||
Sbjct: 435 ctcgcctcccctgtaaagcggcgcgctccccgcggcgatcatcgagtcgaacggctgctt 376
Query: 931 tccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgcc 990
|||||||| ||||||||||||||||||||||| || | ||||||||||| | |||||
Sbjct: 375 cccgacggcggtctggtagccgcacgcgccgccttcaccgccgtcgccgttaggggcgcc 316
Query: 991 gtagtacgtggcgccggcgcctgacagccagccaccggggccgtaga 1037
||||||||||||||||||||| ||||||||||| |||| ||| ||||
Sbjct: 315 gtagtacgtggcgccggcgccggacagccagccgccggagccataga 269
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 158 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 99
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 98 accactgcagccagcagtaatgtgcacagcttcgcc 63
>gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_F11_A012 3', mRNA sequence
Length = 692
Score = 496 bits (250), Expect = e-138
Identities = 313/334 (93%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 355 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 296
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 295 gttgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 236
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 235 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 176
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 175 cacgctgctgccggcctccatcaggtcgacggcgctgaggtcgccgtcgtcgtcctcgaa 116
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
|||||||||||||| ||||||| ||||||| |||||||| ||||||||||| |||| |||
Sbjct: 115 ctcgatgagcacgttgaagtagaacgggttggcgccctggtccaccttgaaggcgacgtt 56
Query: 631 gacgccggtgtacttgcacggcaccctcctgtac 664
||||||| |||||||||||||||||||||||||
Sbjct: 55 cacgccggggtacttgcacggcaccctcctgtac 22
>gb|CN123957.1|CN123957 RHOH1_1_F04.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_1_F04_A002 5', mRNA sequence
Length = 630
Score = 492 bits (248), Expect = e-137
Identities = 284/296 (95%)
Strand = Plus / Minus
Query: 776 ccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttg 510
Query: 836 gtcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtg 895
||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 509 gtcttgcatttcacctcgtagcaggcgccgcagccctcgccacccttgtacagtggcgtg 450
Query: 896 ctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcac 955
|||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 449 ctcccggcggcgatcatcgagtcgaacggcttcttcccgacagcagtctggtagccgcac 390
Query: 956 gcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgac 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgac 330
Query: 1016 agccagccaccggggccgtagacagtcggcgatggcgtgggtgtagctgtgtggtt 1071
||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 329 agccagccaccggagccgtagacgatcggcgatggcctgggtgtagcagtgtggtt 274
Score = 182 bits (92), Expect = 6e-044
Identities = 180/211 (85%), Gaps = 15/211 (7%)
Strand = Plus / Minus
Query: 1077 tggcggccacaggcgccggcttgtagctgcccgtgaccggttttggcttcggcttgaccg 1136
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 259 tggccgccacaggcgccggcttgtagctg------accggttttggctttggcttgaccg 206
Query: 1137 ---------gccgcctgtagctgcccggcttcggcttgggtttgttgagctttcgggtgc 1187
||||||||| |||| ||||||| |||||||| ||| ||| ||||||| |||
Sbjct: 205 cagtcaccggccgcctgtggctggccggctttggcttgggcttgctgaactttcggttgc 146
Query: 1188 aagcaatggggctcactaggagtgagaggaccaccactgcagccagcagcaatgtccaaa 1247
||||||||||||||||||||||| |||||||||||||| |||| |||||| || ||||
Sbjct: 145 tggcaatggggctcactaggagtgacaggaccaccactgcggccaacagcaaagtgcaaa 86
Query: 1248 gcttcgccattgctgctgtttttaagctcga 1278
|||||||||||||||||||||||||||||||
Sbjct: 85 gcttcgccattgctgctgtttttaagctcga 55
Score = 111 bits (56), Expect = 2e-022
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 619 gaacgcgatgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcac 678
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaacgcgacgttcacgccggggtacttgcacggcaccctcctgtacaggatcctgagcac 571
Query: 679 gccgccag 686
||||||||
Sbjct: 570 gccgccag 563
>gb|CD210199.1|CD210199 HS1_57_F11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_57_F11_A012 5', mRNA sequence
Length = 695
Score = 456 bits (230), Expect = e-126
Identities = 373/421 (88%), Gaps = 6/421 (1%)
Strand = Plus / Minus
Query: 623 gcgatgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccg 682
|||| ||| ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||
Sbjct: 692 gcgacgttcacgccggggtacttgcacggcaccctcctgtactggaccctcacgacgccg 633
Query: 683 ccagcgcggagcttgtcggccatgccgggccggg------ccatggcgcccatggcggtg 736
|| ||||||| |||||||||||||||| ||| || |||||||||||||||| |||
Sbjct: 632 ccggcgcggaccttgtcggccatgccgcgcccgggcttcgccatggcgcccatggccgtg 573
Query: 737 ccgctcatgtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtg 796
||||||||||| |||||| |||||||||| |||||||||||||| |||||| |||| |||
Sbjct: 572 ccgctcatgtcgaagtgcgcgacctcgcccgggaacagcccgcccggggacaggtccgtg 513
Query: 797 attacgatggtcacgggctggccggagcacgcggcgttggtcgtgcatttcacctcgtag 856
|| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 512 atgacgatggtcaccggctggccggagcacgccgcgttgctcgtgcatttcacctcgtag 453
Query: 857 caggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgag 916
||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||
Sbjct: 452 caggcgccgcagccctcgcctcccctgtaaagcggcgcgctccccgcggcgatcatcgag 393
Query: 917 tcgaatggcttctttccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcg 976
||||| |||| ||| |||||||| ||||||||||||||||||||||| || | ||||||
Sbjct: 392 tcgaacggctgcttcccgacggcggtctggtagccgcacgcgccgccttcaccgccgtcg 333
Query: 977 ccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccggggccgtag 1036
||||| | |||||||||||||||||||||||||| ||||||||||| |||| ||| |||
Sbjct: 332 ccgttaggggcgccgtagtacgtggcgccggcgccggacagccagccgccggagccatag 273
Query: 1037 a 1037
|
Sbjct: 272 a 272
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 161 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 102
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 101 accactgcagccagcagtaatgtgcacagcttcgcc 66
>gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239k22, DNA
sequence
Length = 361
Score = 440 bits (222), Expect = e-121
Identities = 273/290 (94%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 290 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 231
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 230 gttgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 171
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 170 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 111
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 110 cacgctgctgccggcctccatcaggtcgacggcgctgaggtcgccgtcgtcgtcctcgaa 51
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttga 620
|||||||||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct: 50 ctcgatgagcacgttgaagtagaacgggttggcgccctggtccaccttga 1
>gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E11_A007 3', mRNA sequence
Length = 561
Score = 404 bits (204), Expect = e-111
Identities = 246/260 (94%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 260 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 201
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 200 gttgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 141
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 140 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 81
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 80 cacgctgctgccggcctccatcaggtcgacggcgctgaggtcgccgtcgtcgtcctcgaa 21
Query: 571 ctcgatgagcacgtcgaagt 590
|||||||||||||| |||||
Sbjct: 20 ctcgatgagcacgttgaagt 1
>gb|CN131820.1|CN131820 OX1_2_B01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_2_B01_A002 5', mRNA sequence
Length = 622
Score = 404 bits (204), Expect = e-111
Identities = 323/363 (88%), Gaps = 6/363 (1%)
Strand = Plus / Minus
Query: 681 cgccagcgcggagcttgtcggccatgccgggccggg------ccatggcgcccatggcgg 734
|||| ||||||| |||||||||||||||| ||| || |||||||||||||||| |
Sbjct: 622 cgccggcgcggaccttgtcggccatgccgcgcccgggcttcgccatggcgcccatggccg 563
Query: 735 tgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcgg 794
||||||||||||| |||||| |||||||||| |||||||||||||| |||||| |||| |
Sbjct: 562 tgccgctcatgtcgaagtgcgcgacctcgcccgggaacagcccgcccggggacaggtccg 503
Query: 795 tgattacgatggtcacgggctggccggagcacgcggcgttggtcgtgcatttcacctcgt 854
|||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 502 tgatgacgatggtcaccggctggccggagcacgccgcgttgctcgtgcatttcacctcgt 443
Query: 855 agcaggcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcg 914
||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||
Sbjct: 442 agcaggcgccgcagccctcgcctcccctgtaaagcggcgcgctccccgcggcgatcatcg 383
Query: 915 agtcgaatggcttctttccgacggccgtctggtagccgcacgcgccgccgtcgctcccgt 974
||||||| |||| ||| |||||||| ||||||||||||||||||||||| || | ||||
Sbjct: 382 agtcgaacggctgcttcccgacggcggtctggtagccgcacgcgccgccttcaccgccgt 323
Query: 975 cgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccggggccgt 1034
||||||| | |||||||||||||||||||||||||| ||||||||||| |||| ||| |
Sbjct: 322 cgccgttaggggcgccgtagtacgtggcgccggcgccggacagccagccgccggagccat 263
Query: 1035 aga 1037
|||
Sbjct: 262 aga 260
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 149 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 90
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 89 accactgcagccagcagtaatgtgcacagcttcgcc 54
>gb|CD221738.1|CD221738 CCC1_70_G11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_G11_A007 5', mRNA sequence
Length = 600
Score = 400 bits (202), Expect = e-109
Identities = 292/322 (90%)
Strand = Plus / Minus
Query: 716 gccatggcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagc 775
||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 593 gccatggcgcccatggccgtgccgctcatgtcgaagtgcgcgacctcgcccgggaacagc 534
Query: 776 ccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttg 835
||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 533 ccgcccggggacaggtccgtgatgacgatggtcaccggctggccggagcacgccgcgttg 474
Query: 836 gtcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtg 895
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 473 ctcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtaaagcggcgcg 414
Query: 896 ctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcac 955
||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||
Sbjct: 413 ctccccgcggcgatcatcgagtcgaacggctgcttcccgacggcggtctggtagccgcac 354
Query: 956 gcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgac 1015
|||||||| || | ||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 353 gcgccgccttcaccgccgtcgccgttaggggcgccgtagtacgtggcgccggcgccggac 294
Query: 1016 agccagccaccggggccgtaga 1037
|||||||| |||| ||| ||||
Sbjct: 293 agccagccgccggagccataga 272
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 161 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 102
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 101 accactgcagccagcagtaatgtgcacagcttcgcc 66
>gb|CD221765.1|CD221765 CCC1_70_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E11_A007 5', mRNA sequence
Length = 591
Score = 400 bits (202), Expect = e-109
Identities = 292/322 (90%)
Strand = Plus / Minus
Query: 716 gccatggcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagc 775
||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 591 gccatggcgcccatggccgtgccgctcatgtcgaagtgcgcgacctcgcccgggaacagc 532
Query: 776 ccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttg 835
||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 531 ccgcccggggacaggtccgtgatgacgatggtcaccggctggccggagcacgccgcgttg 472
Query: 836 gtcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtg 895
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 471 ctcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtaaagcggcgcg 412
Query: 896 ctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcac 955
||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||
Sbjct: 411 ctccccgcggcgatcatcgagtcgaacggctgcttcccgacggcggtctggtagccgcac 352
Query: 956 gcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgac 1015
|||||||| || | ||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 351 gcgccgccttcaccgccgtcgccgttaggggcgccgtagtacgtggcgccggcgccggac 292
Query: 1016 agccagccaccggggccgtaga 1037
|||||||| |||| ||| ||||
Sbjct: 291 agccagccgccggagccataga 270
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 159 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 100
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 99 accactgcagccagcagtaatgtgcacagcttcgcc 64
>gb|CW253167.1|CW253167 104_716_11224935_148_35100_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224935, DNA
sequence
Length = 647
Score = 394 bits (199), Expect = e-108
Identities = 303/338 (89%), Gaps = 6/338 (1%)
Strand = Plus / Minus
Query: 632 acgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcgg 691
||||||| ||||||||||||||||||||||||| ||| ||| | |||||||| ||||||
Sbjct: 641 acgccggggtacttgcacggcaccctcctgtactggaccctcacgacgccgccggcgcgg 582
Query: 692 agcttgtcggccatgccgggccggg------ccatggcgcccatggcggtgccgctcatg 745
| |||||||||||||||| ||| || |||||||||||||||| ||||||||||||
Sbjct: 581 accttgtcggccatgccgcgcccgggcttcgccatggcgcccatggccgtgccgctcatg 522
Query: 746 tcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgatg 805
|| |||||| |||||||||| |||||||||||||| |||||| |||| ||||| ||||||
Sbjct: 521 tcgaagtgcgcgacctcgcccgggaacagcccgcccggggacaggtccgtgatgacgatg 462
Query: 806 gtcacgggctggccggagcacgcggcgttggtcgtgcatttcacctcgtagcaggcgccg 865
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 461 gtcaccggctggccggagcacgccgcgttgctcgtgcatttcacctcgtagcaggcgccg 402
Query: 866 cagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggc 925
|||||||||||||||||||| || |||| |||||| |||||||||||||||||||| |||
Sbjct: 401 cagccctcgcctcccctgtaaagcggcgcgctccccgcggcgatcatcgagtcgaacggc 342
Query: 926 ttctttccgacggccgtctggtagccgcacgcgccgcc 963
| ||| |||||||| |||||||||||||||||||||||
Sbjct: 341 tgcttcccgacggcggtctggtagccgcacgcgccgcc 304
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 971 ccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccgggg 1030
||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct: 166 ccgtcgccgttaggggcgccgtagtacgtggcgccggcgccggacagccagccgccggag 107
Query: 1031 ccgtaga 1037
|| ||||
Sbjct: 106 ccataga 100
>gb|CD220530.1|CD220530 CCC1_67_F12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_F12_A007 5', mRNA sequence
Length = 633
Score = 387 bits (195), Expect = e-105
Identities = 317/358 (88%), Gaps = 6/358 (1%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccggg------ccatggcgcccatggcggtgccg 739
||||||| |||||||||||||||| ||| || |||||||||||||||| ||||||
Sbjct: 629 gcgcggaccttgtcggccatgccgcgcccgggcttcgccatggcgcccatggccgtgccg 570
Query: 740 ctcatgtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgatt 799
|||||||| |||||| |||||||||| |||||||||||||| |||||| |||| |||||
Sbjct: 569 ctcatgtcgaagtgcgcgacctcgcccgggaacagcccgcccggggacaggtccgtgatg 510
Query: 800 acgatggtcacgggctggccggagcacgcggcgttggtcgtgcatttcacctcgtagcag 859
||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 509 acgatagtcaccggctggccggagcacgccgcgttgctcgtgcatttcacctcgtagcag 450
Query: 860 gcgccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcg 919
|||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||
Sbjct: 449 gcgccgcagccctcgcctcccctgtaaagcggcgcgctccccgcggcgatcatcgagtcg 390
Query: 920 aatggcttctttccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcgccg 979
|| |||| ||| |||||||| |||||||||||||||||| |||| || | |||||||||
Sbjct: 389 aacggctgcttcccgacggcggtctggtagccgcacgcgtcgccttcaccgccgtcgccg 330
Query: 980 ttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccggggccgtaga 1037
|| | |||||||||||||||||||||||||| ||||||||||| |||| ||| ||||
Sbjct: 329 ttaggggcgccgtagtacgtggcgccggcgccggacagccagccgccggagccataga 272
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 161 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 102
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 101 accactgcagccagcagtaatgtgcacagcttcgcc 66
>gb|CW219575.1|CW219575 104_653_11196855_148_37142_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196855, DNA
sequence
Length = 483
Score = 355 bits (179), Expect = 7e-096
Identities = 209/219 (95%)
Strand = Plus / Plus
Query: 745 gtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgat 804
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gtcaaagtgctcaacctcgccggggaacagatcgccaggggactggtcggtgattacgat 60
Query: 805 ggtcacgggctggccggagcacgcggcgttggtcgtgcatttcacctcgtagcaggcgcc 864
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 ggtcacgggctggccggagcacgcggcgttggtcttgcatttcacctcgtagcaggcgcc 120
Query: 865 gcagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatgg 924
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 gcagccctcgccacccttgtacagtggcgtgctcccggcggcgatcatcgagtcgaacgg 180
Query: 925 cttctttccgacggccgtctggtagccgcacgcgccgcc 963
|||||| ||||| || |||||||||||||||||||||||
Sbjct: 181 cttcttcccgacagcagtctggtagccgcacgcgccgcc 219
Score = 178 bits (90), Expect = 9e-043
Identities = 105/110 (95%)
Strand = Plus / Plus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccag 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccag 376
Query: 1022 ccaccggggccgtagacagtcggcgatggcgtgggtgtagctgtgtggtt 1071
||||||| ||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 377 ccaccggagccgtagacgatcggcgatggcctgggtgtagcagtgtggtt 426
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1077 tggcggccacaggcgccggcttgtagctg 1105
|||| ||||||||||||||||||||||||
Sbjct: 441 tggccgccacaggcgccggcttgtagctg 469
>gb|CD206277.1|CD206277 HS1_21_C02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_21_C02_A012 5', mRNA sequence
Length = 502
Score = 321 bits (162), Expect = 1e-085
Identities = 240/266 (90%)
Strand = Plus / Minus
Query: 772 cagcccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggc 831
||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 502 cagcccgcccggggacaggtccgtgatgacgatggtcaccggctggccggagcacgccgc 443
Query: 832 gttggtcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtgg 891
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 442 gttgctcgtgcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtaaagcgg 383
Query: 892 cgtgctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagcc 951
|| |||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||||
Sbjct: 382 cgcgctccccgcggcgatcatcgagtcgaacggctgcttcccgacggcggtctggtagcc 323
Query: 952 gcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcc 1011
|||||||||||| || | ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 322 gcacgcgccgccttcaccgccgtcgccgttaggggcgccgtagtacgtggcgccggcgcc 263
Query: 1012 tgacagccagccaccggggccgtaga 1037
||||||||||| |||| ||| ||||
Sbjct: 262 ggacagccagccgccggagccataga 237
Score = 71.9 bits (36), Expect = 1e-010
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 128 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 69
Query: 1220 accact-gcagccagcagcaatgt 1242
||| || ||||||||||| |||||
Sbjct: 68 acctctagcagccagcagtaatgt 45
>gb|CN125086.1|CN125086 RHOH1_8_F08.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_8_F08_A002 5', mRNA sequence
Length = 805
Score = 313 bits (158), Expect = 2e-083
Identities = 459/556 (82%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| ||||| ||||||||||| |||||||||
Sbjct: 781 gcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctccatcaggtccacg 722
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
|||||||||||||||||| ||||||||||||| | ||||| ||||||||| | |||||
Sbjct: 721 gcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtagaatgggttg 662
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
| |||||| |||||| |||| |||||||| |||||| |||||||||||||||||||| ||
Sbjct: 661 gagccctggtccaccctgaaggcgatgttcacgccgctgtacttgcacggcaccctcttg 602
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||| | | || | ||| | ||||| ||||||||||||||||||||| ||||||
Sbjct: 601 tactggacctttaggataccggcggcgcgaagcttgtcggccatgccgggcttcgccatg 542
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgcca 781
|||||||||| ||||||||||||||| ||||| | ||||| | || | | |||||
Sbjct: 541 gcgcccatggaggtgccgctcatgtcgaagtgagccgcctcggcaaggcagacaccgccg 482
Query: 782 ggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgt- 840
||| ||| ||||||||| || | ||| | |||||||||||||| || ||||| | |||
Sbjct: 481 gggcactcgtcggtgatgaccacggtggccggctggccggagcatgccgcgtt-gccgtc 423
Query: 841 gcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctccc 900
|||||| ||||||||||| ||||| ||||||| ||||||| || |||| | || ||| ||
Sbjct: 422 gcatttaacctcgtagcaagcgccacagcccttgcctcccttgaacagcgacgggctgcc 363
Query: 901 ggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgcc 960
||||||||||||||| ||| || | |||||||| ||||||||||||||||||||
Sbjct: 362 ggcggcgatcatcgacgagaaggggcgttgcccgacggcggtctggtagccgcacgcgcc 303
Query: 961 gccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagcca 1020
|||||| || |||||||||| || |||||||||||||| ||||||||| |||| |||
Sbjct: 302 gccgtcactgccgtcgccgtcgggtgcgccgtagtacgtcgcgccggcg---gacaacca 246
Query: 1021 gccaccggggccgtag 1036
||| |||| |||||||
Sbjct: 245 gccgccggagccgtag 230
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 137 gagcttgcgggagcaagcaatggggctcactag 105
>gb|CN128815.1|CN128815 RHOH1_31_F05.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_31_F05_A002 5', mRNA sequence
Length = 847
Score = 313 bits (158), Expect = 2e-083
Identities = 459/556 (82%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| ||||| ||||||||||| |||||||||
Sbjct: 781 gcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctccatcaggtccacg 722
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
|||||||||||||||||| ||||||||||||| | ||||| ||||||||| | |||||
Sbjct: 721 gcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtagaatgggttg 662
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
| |||||| |||||| |||| |||||||| |||||| |||||||||||||||||||| ||
Sbjct: 661 gagccctggtccaccctgaaggcgatgttcacgccgctgtacttgcacggcaccctcttg 602
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||| | | || | ||| | ||||| ||||||||||||||||||||| ||||||
Sbjct: 601 tactggacctttaggataccggcggcgcgaagcttgtcggccatgccgggcttcgccatg 542
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgcca 781
|||||||||| ||||||||||||||| ||||| | ||||| | || | | |||||
Sbjct: 541 gcgcccatggaggtgccgctcatgtcgaagtgagccgcctcggcaaggcagacaccgccg 482
Query: 782 ggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgt- 840
||| ||| ||||||||| || | ||| | |||||||||||||| || ||||| | |||
Sbjct: 481 gggcactcgtcggtgatgaccacggtggccggctggccggagcatgccgcgtt-gccgtc 423
Query: 841 gcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctccc 900
|||||| ||||||||||| ||||| ||||||| ||||||| || |||| | || ||| ||
Sbjct: 422 gcatttaacctcgtagcaagcgccacagcccttgcctcccttgaacagcgacgggctacc 363
Query: 901 ggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgcc 960
||||||||||||||| ||| || | |||||||| ||||||||||||||||||||
Sbjct: 362 ggcggcgatcatcgacgagaaggggcgttgcccgacggcggtctggtagccgcacgcgcc 303
Query: 961 gccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagcca 1020
|||||| || |||||||||| || |||||||||||||| ||||||||| |||| |||
Sbjct: 302 gccgtcactgccgtcgccgtcgggtgcgccgtagtacgtcgcgccggcg---gacaacca 246
Query: 1021 gccaccggggccgtag 1036
||| |||| |||||||
Sbjct: 245 gccgccggagccgtag 230
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 137 gagcttgcgggagcaagcaatggggctcactag 105
>gb|CN130578.1|CN130578 RHOH1_42_A01.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_42_A01_A002 5', mRNA sequence
Length = 795
Score = 313 bits (158), Expect = 2e-083
Identities = 459/556 (82%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 482 gcgccccagttgtgcgccataggagtccagacgccgctgccggcctccatgaggtccacg 541
||||||||||| ||| |||| || |||||| ||||| ||||||||||| |||||||||
Sbjct: 782 gcgccccagttctgcaccatcggcgtccaggtgccgcaaccggcctccatcaggtccacg 723
Query: 542 gcgctgaggtcgccgtcgtcgtcctcgaactcgatgagcacgtcgaagtagtacgggttc 601
|||||||||||||||||| ||||||||||||| | ||||| ||||||||| | |||||
Sbjct: 722 gcgctgaggtcgccgtcgccgtcctcgaactccaccagcacctcgaagtagaatgggttg 663
Query: 602 gcgccctgatccaccttgaacgcgatgttgacgccggtgtacttgcacggcaccctcctg 661
| |||||| |||||| |||| |||||||| |||||| |||||||||||||||||||| ||
Sbjct: 662 gagccctggtccaccctgaaggcgatgttcacgccgctgtacttgcacggcaccctcttg 603
Query: 662 tacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccgggccatg 721
||| ||| | | || | ||| | ||||| ||||||||||||||||||||| ||||||
Sbjct: 602 tactggacctttaggataccggcggcgcgaagcttgtcggccatgccgggcttcgccatg 543
Query: 722 gcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagcccgcca 781
|||||||||| ||||||||||||||| ||||| | ||||| | || | | |||||
Sbjct: 542 gcgcccatggaggtgccgctcatgtcgaagtgagccgcctcggcaaggcagacaccgccg 483
Query: 782 ggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttggtcgt- 840
||| ||| ||||||||| || | ||| | |||||||||||||| || ||||| | |||
Sbjct: 482 gggcactcgtcggtgatgaccacggtggccggctggccggagcatgccgcgtt-gccgtc 424
Query: 841 gcatttcacctcgtagcaggcgccgcagccctcgcctcccctgtacagtggcgtgctccc 900
|||||| ||||||||||| ||||| ||||||| ||||||| || |||| | || ||| ||
Sbjct: 423 gcatttaacctcgtagcaagcgccacagcccttgcctcccttgaacagcgacgggctacc 364
Query: 901 ggcggcgatcatcgagtcgaatggcttctttccgacggccgtctggtagccgcacgcgcc 960
||||||||||||||| ||| || | |||||||| ||||||||||||||||||||
Sbjct: 363 ggcggcgatcatcgacgagaaggggcgttgcccgacggcggtctggtagccgcacgcgcc 304
Query: 961 gccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagcca 1020
|||||| || |||||||||| || |||||||||||||| ||||||||| |||| |||
Sbjct: 303 gccgtcactgccgtcgccgtcgggtgcgccgtagtacgtcgcgccggcg---gacaacca 247
Query: 1021 gccaccggggccgtag 1036
||| |||| |||||||
Sbjct: 246 gccgccggagccgtag 231
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 138 gagcttgcgggagcaagcaatggggctcactag 106
>gb|CD220424.1|CD220424 CCC1_67_F12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_F12_A007 3', mRNA sequence
Length = 567
Score = 303 bits (153), Expect = 2e-080
Identities = 189/201 (94%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 204 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 145
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 144 gtcgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 85
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 84 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 25
Query: 511 gacgccgctgccggcctccat 531
|||| |||||||||||||||
Sbjct: 24 cacgctgctgccggcctccat 4
>gb|CN128214.1|CN128214 RHOH1_27_G06.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_27_G06_A002 5', mRNA sequence
Length = 754
Score = 299 bits (151), Expect = 4e-079
Identities = 428/517 (82%), Gaps = 5/517 (0%)
Strand = Plus / Minus
Query: 521 ccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaactcgatgagc 580
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct: 742 ccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaactccaccagc 683
Query: 581 acgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgttgacgccggtg 640
|| ||||||||| | ||||| | |||||| |||||| |||| |||||||| |||||| ||
Sbjct: 682 acctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgttcacgccgctg 623
Query: 641 tacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcggagcttgtcg 700
|||||||||||||||||| ||||| ||| | | || | ||| | ||||| |||||||||
Sbjct: 622 tacttgcacggcaccctcttgtactggacctttaggataccggcggcgcgaagcttgtcg 563
Query: 701 gccatgccgggccgggccatggcgcccatggcggtgccgctcatgtcaaagtgctcgacc 760
|||||||||||| |||||||||||||||| ||||||||||||||| ||||| | ||
Sbjct: 562 gccatgccgggcttcgccatggcgcccatggaggtgccgctcatgtcgaagtgagccgcc 503
Query: 761 tcgccggggaacagcccgccaggggactggtcggtgattacgatggtcacgggctggccg 820
||| | || | | ||||| ||| ||| ||||||||| || | ||| | |||||||||
Sbjct: 502 tcggcaaggcagacaccgccggggcactcgtcggtgatgaccacggtggccggctggccg 443
Query: 821 gagcacgcggcgttggtcgt-gcatttcacctcgtagcaggcgccgcagccctcgcctcc 879
||||| || ||||| | ||| |||||| ||||||||||| ||||| ||||||| ||||||
Sbjct: 442 gagcatgccgcgtt-gccgtcgcatttaacctcgtagcaagcgccacagcccttgcctcc 384
Query: 880 cctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctttccgacggc 939
| || |||| | || ||| ||||||||||||||||| ||| || | ||||||||
Sbjct: 383 cttgaacagcgacgggctaccggcggcgatcatcgacgagaaggggcgttgcccgacggc 324
Query: 940 cgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgt 999
|||||||||||||||||||||||||| || |||||||||| || ||||||||||||||
Sbjct: 323 ggtctggtagccgcacgcgccgccgtcactgccgtcgccgtcgggtgcgccgtagtacgt 264
Query: 1000 ggcgccggcgcctgacagccagccaccggggccgtag 1036
||||||||| |||| |||||| |||| |||||||
Sbjct: 263 cgcgccggcg---gacaaccagccgccggagccgtag 230
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 137 gagcttgcgggagcaagcaatggggctcactag 105
>gb|CD221639.1|CD221639 CCC1_70_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_G11_A007 3', mRNA sequence
Length = 550
Score = 295 bits (149), Expect = 5e-078
Identities = 182/193 (94%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 193 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 134
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 133 gttgctggcgacgagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 74
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 73 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 14
Query: 511 gacgccgctgccg 523
|||| |||||||
Sbjct: 13 cacgctgctgccg 1
>gb|CN131734.1|CN131734 OX1_2_B01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_2_B01_A002 3', mRNA sequence
Length = 533
Score = 287 bits (145), Expect = 1e-075
Identities = 184/197 (93%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 197 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 138
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 137 gttgctggcgacgagcaccctgccagagtcggaggtgagccggagcccgaacggagctct 78
Query: 451 gagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcca 510
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 77 gagcctcctgccgttgttgaggcgccacgttgcgccccagttgtgcgccatgggcgtcca 18
Query: 511 gacgccgctgccggcct 527
|||| |||||||||||
Sbjct: 17 cacgctgctgccggcct 1
>gb|CW456331.1|CW456331 fsbb001f201j24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201j24, DNA
sequence
Length = 684
Score = 276 bits (139), Expect = 5e-072
Identities = 187/203 (92%)
Strand = Plus / Plus
Query: 761 tcgccggggaacagcccgccaggggactggtcggtgattacgatggtcacgggctggccg 820
||||| |||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||
Sbjct: 1 tcgcccgggaacagcccgcccggggacaggtccgtgatgacgatggtcaccggctggccg 60
Query: 821 gagcacgcggcgttggtcgtgcatttcacctcgtagcaggcgccgcagccctcgcctccc 880
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagcacgccgcgttgctcgtgcatttcacctcgtagcaggcgccgcagccctcgcctccc 120
Query: 881 ctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctttccgacggcc 940
||||| || |||| |||||| |||||||||||||||||||| |||| ||| ||||||||
Sbjct: 121 ctgtaaagcggcgcgctccccgcggcgatcatcgagtcgaacggctgcttcccgacggcg 180
Query: 941 gtctggtagccgcacgcgccgcc 963
|||||||||||||||||||||||
Sbjct: 181 gtctggtagccgcacgcgccgcc 203
Score = 103 bits (52), Expect = 4e-020
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 1160 ggcttgggtttgttgagctttcgggtgcaagcaatggggctcactaggagtgagaggacc 1219
||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||| ||
Sbjct: 518 ggcttggtcttgctgagcttgcggctgcaagcaatggggctcactagaagtgagagcacg 577
Query: 1220 accactgcagccagcagcaatgtccaaagcttcgcc 1255
||||||||||||||||| ||||| || |||||||||
Sbjct: 578 accactgcagccagcagtaatgtgcacagcttcgcc 613
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 971 ccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccgggg 1030
||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct: 341 ccgtcgccgttaggggcgccgtagtacgtggcgccggcgccggacagccagccgccggag 400
Query: 1031 ccgtaga 1037
|| ||||
Sbjct: 401 ccataga 407
>gb|DN552513.1|DN552513 pSHR-RT-A-H1_H09_C105 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 1256
Score = 276 bits (139), Expect = 5e-072
Identities = 353/423 (83%), Gaps = 6/423 (1%)
Strand = Plus / Plus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
||||||||||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 334 gtagttgaccagggagcggtacgttgcgccggggttccagccggcggggatgacgttgtt 393
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 394 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 453
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 454 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 513
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 514 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 573
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| || |||||| | ||||||| |||||| |||||| ||||||||||||
Sbjct: 574 ctccaccagcacctcaaagtagaatgggttcgagccctggtccacccggaacgcgatgtt 633
Query: 631 gacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcg 690
|||||| |||||||||||||||||||| ||||| ||| | | || | ||| | |||||
Sbjct: 634 cacgccgctgtacttgcacggcaccctcttgtactggacctttaggataccggcggcgcg 693
Query: 691 gagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatgtcaaa 750
| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct: 694 aatcttgtcggccatgccgggcttcgccatggcgcccatggaggtgccgctcatgtcgaa 753
Query: 751 gtg 753
|||
Sbjct: 754 gtg 756
Score = 143 bits (72), Expect = 5e-032
Identities = 190/226 (84%), Gaps = 5/226 (2%)
Strand = Plus / Plus
Query: 812 ggctggccggagcacgcggcgttggtcgt-gcatttcacctcgtagcaggcgccgcagcc 870
||||||||||||||||| |||||| ||| |||||| ||||||||||| ||||| |||||
Sbjct: 815 ggctggccggagcacgccgcgttgc-cgtcgcatttaacctcgtagcaagcgccacagcc 873
Query: 871 ctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctt 930
|| ||||||| || |||| | || ||| ||||||||||||||||| ||| || ||
Sbjct: 874 cttgcctcccttgaacagcgacgggctaccggcggcgatcatcgacgagaaggggcgctg 933
Query: 931 tccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgcc 990
|||||||| |||||||||||||||||||||||||| || |||||||||| || |||||
Sbjct: 934 accgacggcagtctggtagccgcacgcgccgccgtcactgccgtcgccgtcgggtgcgcc 993
Query: 991 gtagtacgtggcgccggcgcctgacagccagccaccggggccgtag 1036
||||||||| ||||||||| |||| |||||| |||| |||||||
Sbjct: 994 gtagtacgtcgcgccggcg---gacaaccagccgccggagccgtag 1036
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 1129 gagcttgcgggagcaagcaatggggctcactag 1161
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 201 ggggactgcagaggccgtggagggagggaagaa 233
>gb|CF427145.1|CF427145 PH1_3_A04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_A04_A002 5', mRNA sequence
Length = 454
Score = 272 bits (137), Expect = 8e-071
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 883 gtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgt 942
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct: 454 gtacagtggcgtgctcccggcggcgatcatcgagtcgaacggcttcttcccgacagcagt 395
Query: 943 ctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggc 1002
||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 394 ctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcacagtagtttgtggc 335
Query: 1003 gccggcgcctgacagccagccaccggggccgtagacagtcggcgatggcgtgggtgtagc 1062
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 334 gccggcgcctgacagccagccaccggagccgtagacgatcggcgatggcctgggtgtagc 275
Query: 1063 tgtgtggtt 1071
||||||||
Sbjct: 274 agtgtggtt 266
Score = 190 bits (96), Expect = 2e-046
Identities = 181/211 (85%), Gaps = 15/211 (7%)
Strand = Plus / Minus
Query: 1077 tggcggccacaggcgccggcttgtagctgcccgtgaccggttttggcttcggcttgaccg 1136
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 251 tggccgccacaggcgccggcttgtagctg------accggttttggctttggcttgaccg 198
Query: 1137 ---------gccgcctgtagctgcccggcttcggcttgggtttgttgagctttcgggtgc 1187
||||||||| |||| ||||||| |||||||| ||| ||| ||||||| |||
Sbjct: 197 cagtcaccggccgcctgtggctggccggctttggcttgggcttgctgaactttcggttgc 138
Query: 1188 aagcaatggggctcactaggagtgagaggaccaccactgcagccagcagcaatgtccaaa 1247
| ||||||||||||||||||||||| |||||||||||||| |||| |||||| || ||||
Sbjct: 137 aggcaatggggctcactaggagtgacaggaccaccactgcggccaacagcaaagtgcaaa 78
Query: 1248 gcttcgccattgctgctgtttttaagctcga 1278
|||||||||||||||||||||||||||||||
Sbjct: 77 gcttcgccattgctgctgtttttaagctcga 47
>gb|CN125960.1|CN125960 RHOH1_14_H04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_H04_A002 3', mRNA sequence
Length = 549
Score = 250 bits (126), Expect = 3e-064
Identities = 184/202 (91%), Gaps = 1/202 (0%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct: 205 tcaggggtagttgaccaaggaacggtaggtcttggcgggcgtccacgcggccgggatggc 146
Query: 391 gttgttggcgacgag-caccctgcgggagtcggaggtgagccggagcccgaacggcgctt 449
|||| |||||||||| |||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 145 gttgctggcgacgagacaccctgccggagtcggaggtgagcccgaacccgaacggcgctc 86
Query: 450 tgagcttcctgccgttgttgaggcgccacgtggcgccccagttgtgcgccataggagtcc 509
||||| ||||||||||||||| || |||||| |||||||| ||||||||||| || ||||
Sbjct: 85 tgagcctcctgccgttgttgaagcaccacgttgcgccccacttgtgcgccatgggcgtcc 26
Query: 510 agacgccgctgccggcctccat 531
| |||| |||||||||||||||
Sbjct: 25 acacgctgctgccggcctccat 4
>gb|CD462620.1|CD462620 ETH1_38_D10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D10_A002 5', mRNA sequence
Length = 710
Score = 226 bits (114), Expect = 4e-057
Identities = 376/460 (81%), Gaps = 5/460 (1%)
Strand = Plus / Minus
Query: 578 agcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgttgacgccg 637
||||| ||||||||| | ||||| | |||||| |||||| |||| |||||||| ||||||
Sbjct: 702 agcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgttcacgccg 643
Query: 638 gtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcggagcttg 697
|||||||||||||||||||| ||||| ||| | | || | ||| | ||||| ||||||
Sbjct: 642 ctgtacttgcacggcaccctcttgtactggacctttaggataccggcggcgcgaagcttg 583
Query: 698 tcggccatgccgggccgggccatggcgcccatggcggtgccgctcatgtcaaagtgctcg 757
||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |
Sbjct: 582 tcggccatgccgggcttcgccatggcgcccatggaggtgccgctcatgtcgaagtgagcc 523
Query: 758 acctcgccggggaacagcccgccaggggactggtcggtgattacgatggtcacgggctgg 817
||||| | || | | ||||| ||| ||| ||||||||| || | ||| | ||||||
Sbjct: 522 gcctcggcaaggcagacaccgccggggcactcgtcggtgatgaccacggtggccggctgg 463
Query: 818 ccggagcacgcggcgttggtcgt-gcatttcacctcgtagcaggcgccgcagccctcgcc 876
|||||||| || ||||| | ||| |||||| ||||||||||| ||||| ||||||| |||
Sbjct: 462 ccggagcatgccgcgtt-gccgtcgcatttaacctcgtagcaagcgccacagcccttgcc 404
Query: 877 tcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctttccgac 936
|||| || |||| | || ||| ||||||||||||||||| ||| || | |||||
Sbjct: 403 tcccttgaacagcgacgggctaccggcggcgatcatcgacgagaaggggcgttgcccgac 344
Query: 937 ggccgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagta 996
||| |||||||||||||||||||||||||| || |||||||||| || |||||||||||
Sbjct: 343 ggcggtctggtagccgcacgcgccgccgtcactgccgtcgccgtcgggtgcgccgtagta 284
Query: 997 cgtggcgccggcgcctgacagccagccaccggggccgtag 1036
||| ||||||||| |||| |||||| |||| |||||||
Sbjct: 283 cgtcgcgccggcg---gacaaccagccgccggagccgtag 247
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 154 gagcttgcgggagcaagcaatggggctcactag 122
>gb|CN125001.1|CN125001 RHOH1_8_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_F08_A002 3', mRNA sequence
Length = 730
Score = 222 bits (112), Expect = 7e-056
Identities = 341/416 (81%), Gaps = 6/416 (1%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 416 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 357
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||| ||||| |||| | ||| ||||| ||||||
Sbjct: 356 ggcgacgagcaccttgccggagtcggaagtgaggcggaacgagaagggcgccttgagcgc 297
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 296 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 237
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||
Sbjct: 236 ggtgccgcaaccggcctccatcaggttcacggcgctgaggtcgccgtcgccgtcctcgaa 177
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| || || || | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 176 ctccaccagcacctctaaatacaatgggttggagccctggtccaccctgaaagcgatgtt 117
Query: 631 gacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgccagcgcg 690
|||||| |||||||||||||||||||| ||||| ||| | | || | ||| | |||||
Sbjct: 116 cacgccgctgtacttgcacggcaccctcttgtactggacctttaggataccggcggcgcg 57
Query: 691 gagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatgt 746
||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 56 aagcttgtcggccatgccgggcttcgccatggcgcccatggaggtgccgctcatgt 1
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 549 ggggactgcagaggccgtggagggagggaagaa 517
>gb|CX613415.1|CX613415 GABR1_8_B11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_B11_A002 3', mRNA sequence
Length = 779
Score = 222 bits (112), Expect = 7e-056
Identities = 284/340 (83%), Gaps = 6/340 (1%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
||||||||||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 344 gtagttgaccagggagcggtacgttgcgccggggttccagccggcggggatgacgttgtt 285
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 284 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 225
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 224 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 165
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 164 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 105
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| || |||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 104 ctccaccagcacctccaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 45
Query: 631 gacgccggtgtacttgcacggcaccctcctgtacaggatc 670
|||||| |||||||||||||||||||| ||||| |||||
Sbjct: 44 cacgccgctgtacttgcacggcaccctcttgtactggatc 5
>gb|CD432496.1|CD432496 ETH1_30_C04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_C04_A002 3', mRNA sequence
Length = 657
Score = 218 bits (110), Expect = 1e-054
Identities = 279/334 (83%), Gaps = 6/334 (1%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 342 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 283
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 282 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 223
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 222 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 163
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 162 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 103
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| ||||||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 102 ctccaccagcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 43
Query: 631 gacgccggtgtacttgcacggcaccctcctgtac 664
|||||| |||||||||||||||||||| |||||
Sbjct: 42 cacgccgctgtacttgcacggcaccctcttgtac 9
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 475 ggggactgcagaggccgtggagggagggaagaa 443
>gb|CD462510.1|CD462510 ETH1_38_D10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_D10_A002 3', mRNA sequence
Length = 669
Score = 218 bits (110), Expect = 1e-054
Identities = 279/334 (83%), Gaps = 6/334 (1%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 341 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 282
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 281 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 222
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 221 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 162
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 161 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 102
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| ||||||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 101 ctccaccagcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 42
Query: 631 gacgccggtgtacttgcacggcaccctcctgtac 664
|||||| |||||||||||||||||||| |||||
Sbjct: 41 cacgccgctgtacttgcacggcaccctcttgtac 8
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 474 ggggactgcagaggccgtggagggagggaagaa 442
>gb|CW368677.1|CW368677 fsbb001f042l22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042l22, DNA
sequence
Length = 200
Score = 216 bits (109), Expect = 4e-054
Identities = 152/165 (92%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 716 gccatggcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccggggaacagc 775
||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 165 gccatggcgcccatggccgtgccgctcatgtcgaagtgcgcgacctcgcccgggaacagc 106
Query: 776 ccgccaggggactggtcggtgattacgatggtcacgggctggccggagcacgcggcgttg 835
||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 105 ccgcccggggacaggtccgtgatgacgatggtcaccggctggccggagcacgccgcgttg 46
Query: 836 gtcgtgcatttcacctcgtagcaggcg-ccgcagccctcgcctcc 879
|||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 45 ctcgtgcatttcacctcgtagcaggcgacagcagccctcgcctcc 1
>gb|CD432508.1|CD432508 ETH1_30_C04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_C04_A002 5', mRNA sequence
Length = 695
Score = 216 bits (109), Expect = 4e-054
Identities = 368/451 (81%), Gaps = 5/451 (1%)
Strand = Plus / Minus
Query: 587 aagtagtacgggttcgcgccctgatccaccttgaacgcgatgttgacgccggtgtacttg 646
|||||| | ||||| | |||||| |||||| |||| |||||||| |||||| ||||||||
Sbjct: 695 aagtagaatgggttggagccctggtccaccctgaaggcgatgttcacgccgctgtacttg 636
Query: 647 cacggcaccctcctgtacaggatcctgagcacgccgccagcgcggagcttgtcggccatg 706
|||||||||||| ||||| ||| | | || | ||| | ||||| |||||||||||||||
Sbjct: 635 cacggcaccctcttgtactggacctttaggataccggcggcgcgaagcttgtcggccatg 576
Query: 707 ccgggccgggccatggcgcccatggcggtgccgctcatgtcaaagtgctcgacctcgccg 766
|||||| |||||||||||||||| ||||||||||||||| ||||| | ||||| |
Sbjct: 575 ccgggcttcgccatggcgcccatggaggtgccgctcatgtcgaagtgagccgcctcggca 516
Query: 767 gggaacagcccgccaggggactggtcggtgattacgatggtcacgggctggccggagcac 826
|| | | ||||| ||| ||| ||||||||| || | ||| | ||||||||||||||
Sbjct: 515 aggcagacaccgccggggcactcgtcggtgatgaccacggtggccggctggccggagcat 456
Query: 827 gcggcgttggtcgt-gcatttcacctcgtagcaggcgccgcagccctcgcctcccctgta 885
|| ||||| | ||| |||||| ||||||||||| ||||| ||||||| ||||||| || |
Sbjct: 455 gccgcgtt-gccgtcgcatttaacctcgtagcaagcgccacagcccttgcctcccttgaa 397
Query: 886 cagtggcgtgctcccggcggcgatcatcgagtcgaatggcttctttccgacggccgtctg 945
||| | || ||| ||||||||||||||||| ||| || | |||||||| |||||
Sbjct: 396 cagcgacgggctaccggcggcgatcatcgacgagaaggggcgttgcccgacggcggtctg 337
Query: 946 gtagccgcacgcgccgccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgcc 1005
||||||||||||||||||||| || |||||||||| || |||||||||||||| |||||
Sbjct: 336 gtagccgcacgcgccgccgtcactgccgtcgccgtcgggtgcgccgtagtacgtcgcgcc 277
Query: 1006 ggcgcctgacagccagccaccggggccgtag 1036
|||| |||| |||||| |||| |||||||
Sbjct: 276 ggcg---gacaaccagccgccggagccgtag 249
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 156 gagcttgcgggagcaagcaatggggctcactag 124
>gb|CD206178.1|CD206178 HS1_21_C02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_C02_A012 3', mRNA sequence
Length = 493
Score = 214 bits (108), Expect = 2e-053
Identities = 129/136 (94%)
Strand = Plus / Minus
Query: 331 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 390
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 136 tcaggggtagttgaccaaggaacggtaggtcttgccgggcgtccacgcggccgggatggc 77
Query: 391 gttgttggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgcttt 450
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 76 gttgctggcgaccagcaccctgccggagtcggaggtgagccggagcccgaacggcgctct 17
Query: 451 gagcttcctgccgttg 466
|||| |||||||||||
Sbjct: 16 gagcctcctgccgttg 1
>gb|BZ349112.1|BZ349112 hq87c03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq87c03 5', DNA sequence
Length = 436
Score = 212 bits (107), Expect = 6e-053
Identities = 273/327 (83%), Gaps = 6/327 (1%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 419 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 360
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 359 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 300
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 299 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 240
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 239 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 180
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| ||||||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 179 ctccaccagcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 120
Query: 631 gacgccggtgtacttgcacggcaccct 657
|||||| |||||||||||||||||||
Sbjct: 119 cacgccgctgtacttgcacggcaccct 93
>gb|CL165129.1|CL165129 104_359_10808375_114_31816_359 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808375, DNA
sequence
Length = 758
Score = 212 bits (107), Expect = 6e-053
Identities = 273/327 (83%), Gaps = 6/327 (1%)
Strand = Plus / Minus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 609 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 550
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 549 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 490
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 489 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 430
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 429 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 370
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| ||||||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 369 ctccaccagcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 310
Query: 631 gacgccggtgtacttgcacggcaccct 657
|||||| |||||||||||||||||||
Sbjct: 309 cacgccgctgtacttgcacggcaccct 283
Score = 87.7 bits (44), Expect = 2e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 686 gcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcatg 745
||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 176 gcgcgaagcttgtcggccatgccgggcttcgccatggcgcccatggaggtgccgctcatg 117
Query: 746 tcaaagtg 753
|| |||||
Sbjct: 116 tcgaagtg 109
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 742 ggggactgcagaggccgtggagggagggaagaa 710
>gb|CW204078.1|CW204078 104_631_11186348_148_37094_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186348, DNA
sequence
Length = 736
Score = 212 bits (107), Expect = 6e-053
Identities = 273/327 (83%), Gaps = 6/327 (1%)
Strand = Plus / Plus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 319 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 378
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 379 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 438
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 439 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 498
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 558
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| ||||||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 559 ctccaccagcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 618
Query: 631 gacgccggtgtacttgcacggcaccct 657
|||||| |||||||||||||||||||
Sbjct: 619 cacgccgctgtacttgcacggcaccct 645
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 186 ggggactgcagaggccgtggagggagggaagaa 218
>gb|CW402616.1|CW402616 fsbb001f093p05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f093p05, DNA
sequence
Length = 658
Score = 212 bits (107), Expect = 6e-053
Identities = 273/327 (83%), Gaps = 6/327 (1%)
Strand = Plus / Plus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
|||||| |||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 294 gtagttcaccagggagcggtacgtggcgccggggttccagccggcggggatgacgttgtt 353
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 354 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 413
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 414 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 473
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 474 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 533
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| ||||||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 534 ctccaccagcacctcgaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 593
Query: 631 gacgccggtgtacttgcacggcaccct 657
|||||| |||||||||||||||||||
Sbjct: 594 cacgccgctgtacttgcacggcaccct 620
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 161 ggggactgcagaggccgtggagggagggaagaa 193
>gb|CW433265.1|CW433265 fsbb001f148g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148g13, DNA
sequence
Length = 768
Score = 212 bits (107), Expect = 6e-053
Identities = 273/327 (83%), Gaps = 6/327 (1%)
Strand = Plus / Plus
Query: 337 gtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggcgttgtt 396
||||||||||| ||||||||| || |||||| ||||| |||| |||||| |||||||
Sbjct: 42 gtagttgaccagggagcggtacgttgcgccggggttccagccggcggggatgacgttgtt 101
Query: 397 ggcgacgagcaccctgcgggagtcggaggtgagccggagcccgaacggcgctttgagctt 456
||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| ||||||
Sbjct: 102 ggcgacgagcaccttgccggagtcggaggtgaggcggagcgagaagggcgccttgagcgc 161
Query: 457 cctgccgttgttg-ag-----gcgccacgtggcgccccagttgtgcgccataggagtcca 510
| ||||| ||||| || ||||||| ||||||||||| ||| |||| || |||||
Sbjct: 162 cttgccggtgttggagttgtagcgccacagcgcgccccagttctgcaccatcggcgtcca 221
Query: 511 gacgccgctgccggcctccatgaggtccacggcgctgaggtcgccgtcgtcgtcctcgaa 570
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 222 ggtgccgcaaccggcctccatcaggtccacggcgctgaggtcgccgtcgccgtcctcgaa 281
Query: 571 ctcgatgagcacgtcgaagtagtacgggttcgcgccctgatccaccttgaacgcgatgtt 630
||| | ||||| || |||||| | ||||| | |||||| |||||| |||| ||||||||
Sbjct: 282 ctccaccagcacctccaagtagaatgggttggagccctggtccaccctgaaggcgatgtt 341
Query: 631 gacgccggtgtacttgcacggcaccct 657
|||||| |||||||||||||||||||
Sbjct: 342 cacgccgctgtacttgcacggcaccct 368
Score = 85.7 bits (43), Expect = 1e-014
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 655 cctcctgtacaggatcctgagcacgccgccagcgcggagcttgtcggccatgccgggccg 714
|||| ||||| ||||| |||| | |||| | ||||| ||| |||||||||||||||||
Sbjct: 488 cctcttgtactggatcttgaggatgccggcggcgcgaagcctgtcggccatgccgggctt 547
Query: 715 ggccatggcgcccatggcggtgccgctcatgtcaaagtg 753
||||||||||||||||| |||||||||||||| |||||
Sbjct: 548 ggccatggcgcccatggaagtgccgctcatgtcgaagtg 586
>gb|CN128978.1|CN128978 RHOH1_32_F11.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_32_F11_A002 5', mRNA sequence
Length = 835
Score = 196 bits (99), Expect = 4e-048
Identities = 337/413 (81%), Gaps = 5/413 (1%)
Strand = Plus / Minus
Query: 625 gatgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgcc 684
|||||| |||||| |||||||||||||||||||| ||||| ||| | | || | ||| |
Sbjct: 638 gatgttcacgccgctgtacttgcacggcaccctcttgtactggacctttaggataccggc 579
Query: 685 agcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctcat 744
||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 578 ggcgcgaagcttgtcggccatgccgggcttcgccatggcgcccatggaggtgccgctcat 519
Query: 745 gtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacgat 804
||| ||||| | ||||| | || | | ||||| ||| ||| ||||||||| || |
Sbjct: 518 gtcgaagtgagccgcctcggcaaggcagacaccgccggggcactcgtcggtgatgaccac 459
Query: 805 ggtcacgggctggccggagcacgcggcgttggtcgt-gcatttcacctcgtagcaggcgc 863
||| | |||||||||||||| || ||||| | ||| |||||| ||||||||||| ||||
Sbjct: 458 ggtggccggctggccggagcatgccgcgtt-gccgtcgcatttaacctcgtagcaagcgc 400
Query: 864 cgcagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaatg 923
| ||||||| ||||||| || |||| | || ||| ||||||||||||||||| ||| |
Sbjct: 399 cacagcccttgcctcccttgaacagcgacgggctaccggcggcgatcatcgacgagaagg 340
Query: 924 gcttctttccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttgg 983
| | |||||||| |||||||||||||||||||||||||| || |||||||||| ||
Sbjct: 339 ggcgttgcccgacggcggtctggtagccgcacgcgccgccgtcactgccgtcgccgtcgg 280
Query: 984 tcgcgccgtagtacgtggcgccggcgcctgacagccagccaccggggccgtag 1036
|||||||||||||| ||||||||| |||| |||||| |||| |||||||
Sbjct: 279 gtgcgccgtagtacgtcgcgccggcg---gacaaccagccgccggagccgtag 230
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 137 gagcttgcgggagcaagcaatggggctcactag 105
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 171 ggggactgcagagaccgtccagggagggaagaa 203
||||||||||||| |||| |||||||||||||
Sbjct: 819 ggggactgcagaggccgtggagggagggaagaa 787
>gb|CW219574.1|CW219574 104_653_11196855_116_37141_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196855, DNA
sequence
Length = 594
Score = 190 bits (96), Expect = 2e-046
Identities = 181/211 (85%), Gaps = 15/211 (7%)
Strand = Plus / Minus
Query: 1077 tggcggccacaggcgccggcttgtagctgcccgtgaccggttttggcttcggcttgaccg 1136
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 413 tggccgccacaggcgccggcttgtagctg------accggttttggctttggcttgaccg 360
Query: 1137 ---------gccgcctgtagctgcccggcttcggcttgggtttgttgagctttcgggtgc 1187
||||||||| |||| ||||||| |||||||| ||| ||| ||||||| |||
Sbjct: 359 cagtcaccggccgcctgtggctggccggctttggcttgggcttgctgaactttcggttgc 300
Query: 1188 aagcaatggggctcactaggagtgagaggaccaccactgcagccagcagcaatgtccaaa 1247
| ||||||||||||||||||||||| |||||||||||||| |||| |||||| || ||||
Sbjct: 299 aggcaatggggctcactaggagtgacaggaccaccactgcggccaacagcaaagtgcaaa 240
Query: 1248 gcttcgccattgctgctgtttttaagctcga 1278
|||||||||||||||||||||||||||||||
Sbjct: 239 gcttcgccattgctgctgtttttaagctcga 209
Score = 178 bits (90), Expect = 9e-043
Identities = 105/110 (95%)
Strand = Plus / Minus
Query: 962 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccag 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ccgtcgctcccgtcgccgttggtcgcgccgtagtacgtggcgccggcgcctgacagccag 478
Query: 1022 ccaccggggccgtagacagtcggcgatggcgtgggtgtagctgtgtggtt 1071
||||||| ||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 477 ccaccggagccgtagacgatcggcgatggcctgggtgtagcagtgtggtt 428
>gb|CD233659.1|CD233659 SS1_3_G02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_3_G02_A012 5', mRNA sequence
Length = 654
Score = 190 bits (96), Expect = 2e-046
Identities = 337/414 (81%), Gaps = 5/414 (1%)
Strand = Plus / Minus
Query: 624 cgatgttgacgccggtgtacttgcacggcaccctcctgtacaggatcctgagcacgccgc 683
||||||| |||||| |||||||||||||||||||| ||||| ||| | | || | |||
Sbjct: 654 cgatgttcacgccgctgtacttgcacggcaccctcttgtactggacctttaggataccgg 595
Query: 684 cagcgcggagcttgtcggccatgccgggccgggccatggcgcccatggcggtgccgctca 743
| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 594 cggcgcgaagcttgtcggccatgccgggcttcgccatggcgcccatggaggtgccgctca 535
Query: 744 tgtcaaagtgctcgacctcgccggggaacagcccgccaggggactggtcggtgattacga 803
|||| ||||| | ||||| | || | | ||||| ||| ||| ||||||||| || |
Sbjct: 534 tgtcgaagtgagccgcctcggcaaggcagacaccgccggggcactcgtcggtgatgacca 475
Query: 804 tggtcacgggctggccggagcacgcggcgttggtcgt-gcatttcacctcgtagcaggcg 862
||| | |||||||||||||| || ||||| | ||| |||||| ||||||||||| |||
Sbjct: 474 cggtggccggctggccggagcatgccgcgtt-gccgtcgcatttaacctcgtagcaagcg 416
Query: 863 ccgcagccctcgcctcccctgtacagtggcgtgctcccggcggcgatcatcgagtcgaat 922
|| ||||||| ||||||| || |||| | || ||| ||||||||||||||||| |||
Sbjct: 415 ccacagcccttgcctcccttgaacagcgacgggctaccggcggcgatcatcgacgagaag 356
Query: 923 ggcttctttccgacggccgtctggtagccgcacgcgccgccgtcgctcccgtcgccgttg 982
|| | |||||||| |||||||||||||||||||||||||| || ||||||||| |
Sbjct: 355 gggcgttgcccgacggcggtctggtagccgcacgcgccgccgtcactgccgtcgccgccg 296
Query: 983 gtcgcgccgtagtacgtggcgccggcgcctgacagccagccaccggggccgtag 1036
| |||||||||||||| ||||||||| |||| |||||| |||| |||||||
Sbjct: 295 ggtgcgccgtagtacgtcgcgccggcg---gacaaccagccgccggagccgtag 245
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1174 gagctttcgggtgcaagcaatggggctcactag 1206
|||||| |||| |||||||||||||||||||||
Sbjct: 152 gagcttgcgggagcaagcaatggggctcactag 120
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 429,101
Number of Sequences: 832831
Number of extensions: 429101
Number of successful extensions: 132123
Number of sequences better than 0.5: 184
Number of HSP's better than 0.5 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131447
Number of HSP's gapped (non-prelim): 628
length of query: 1356
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1336
effective length of database: 474,703,049
effective search space: 634203273464
effective search space used: 634203273464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)