BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE917684.1|BE917684 OV1_6_H02.g1_A002 Ovary 1 (OV1) Sorg... 387 e-105
gb|BE917764.1|BE917764 OV1_6_H02.b1_A002 Ovary 1 (OV1) Sorg... 387 e-105
gb|BE918079.1|BE918079 OV1_1_F07.b1_A002 Ovary 1 (OV1) Sorg... 387 e-105
gb|BG558309.1|BG558309 RHIZ2_65_F05.b1_A003 Rhizome2 (RHIZ2... 387 e-105
gb|CF759803.1|CF759803 DSAF1_51_D05.b1_A011 Drought-stresse... 363 2e-098
gb|CF480342.1|CF480342 POL1_65_E01.b1_A002 Pollen Sorghum b... 309 3e-082
gb|AW565152.1|AW565152 LG1_328_D09.b1_A002 Light Grown 1 (L... 246 3e-063
gb|BG558317.1|BG558317 RHIZ2_65_G01.b1_A003 Rhizome2 (RHIZ2... 246 3e-063
gb|CF071358.1|CF071358 FE1_13_G10.b1_A002 Iron-deficient se... 246 3e-063
gb|CW108718.1|CW108718 104_480_11097673_148_34499_007 Sorgh... 155 9e-036
gb|CW285750.1|CW285750 104_763_11410503_148_35507_062 Sorgh... 135 9e-030
gb|BG558023.1|BG558023 RHIZ2_65_F05.g1_A003 Rhizome2 (RHIZ2... 129 5e-028
gb|CW030031.1|CW030031 104_257_10500016_114_30401 Sorghum m... 103 3e-020
gb|CW030032.1|CW030032 104_257_10500016_116_30402 Sorghum m... 103 3e-020
gb|CF757765.1|CF757765 DSAF1_22_A07.g1_A011 Drought-stresse... 94 3e-017
gb|CW438508.1|CW438508 fsbb001f156c23f0 Sorghum methylation... 80 4e-013
gb|CF429379.1|CF429379 PH1_21_H03.g1_A002 Phosphorous-defic... 74 3e-011
gb|CF480187.1|CF480187 POL1_64_F12.b1_A002 Pollen Sorghum b... 74 3e-011
gb|CF481449.1|CF481449 POL1_72_C04.b1_A002 Pollen Sorghum b... 74 3e-011
gb|CF483621.1|CF483621 POL1_23_C07.g1_A002 Pollen Sorghum b... 74 3e-011
gb|CF484587.1|CF484587 POL1_26_F01.b1_A002 Pollen Sorghum b... 74 3e-011
gb|CF757112.1|CF757112 DSAF1_13_H08.g1_A011 Drought-stresse... 74 3e-011
gb|DN552401.1|DN552401 pSHR-L_A12_C001 pSHR Sorghum halepen... 66 7e-009
gb|BG558030.1|BG558030 RHIZ2_65_G01.g1_A003 Rhizome2 (RHIZ2... 60 4e-007
gb|BG241893.1|BG241893 RHIZ2_17_A03.b2_A003 Rhizome2 (RHIZ2... 42 0.096
gb|CW246350.1|CW246350 104_707_11221306_116_37604_043 Sorgh... 40 0.38
gb|AW680445.1|AW680445 WS1_5_B10.b1_A002 Water-stressed 1 (... 40 0.38
gb|BE362062.1|BE362062 DG1_84_G07.b1_A002 Dark Grown 1 (DG1... 40 0.38
gb|BE594486.1|BE594486 PI1_33_H08.b1_A002 Pathogen induced ... 40 0.38
gb|BF655690.1|BF655690 FM1_47_F11.b1_A003 Floral-Induced Me... 40 0.38
gb|BG102369.1|BG102369 RHIZ2_22_H08.b1_A003 Rhizome2 (RHIZ2... 40 0.38
gb|BG159039.1|BG159039 RHIZ2_17_A03.b1_A003 Rhizome2 (RHIZ2... 40 0.38
gb|BG606045.1|BG606045 RHIZ2_80_G03.b1_A003 Rhizome2 (RHIZ2... 40 0.38
>gb|BE917684.1|BE917684 OV1_6_H02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 609
Score = 387 bits (195), Expect = e-105
Identities = 337/383 (87%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 401 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 342
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 341 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 282
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 281 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 222
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 221 caaagccactaaacgcctctctcagtttcatgtcatcaacaccccatgaaagaccaccaa 162
Query: 631 taaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaagagccaccag 690
||||||||||| ||||||||||| |||||||||||||| |||||||| |||| | |||
Sbjct: 161 cgaatagcttggtggacatgagccgagcagcattgaacacagcaggagacgagctagcag 102
Query: 691 tgataccgctcaccagagcactgtgccttagaaggccaccaagcttgttgaaggccgcca 750
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 101 cgacaccgctcgccagagcactgtgccttagaaggctgccaagcttgttgaaggccgcca 42
Query: 751 ttgcg-aacactaaacctgaggg 772
|| |||||||||||||||||
Sbjct: 41 ttttttaacactaaacctgaggg 19
Score = 63.9 bits (32), Expect = 3e-008
Identities = 85/100 (85%), Gaps = 2/100 (2%)
Strand = Plus / Minus
Query: 148 ggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacataaaac 207
|||||||||||| |||| |||||||| |||| ||||| ||| || |||| |||||| |
Sbjct: 595 ggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacataagcc 537
Query: 208 gtcataccaagtcctaaagttcattatttcaaatatcttg 247
||| ||| ||||||||||||||||||||||||||||||
Sbjct: 536 c-catgccaggtcctaaagttcattatttcaaatatcttg 498
>gb|BE917764.1|BE917764 OV1_6_H02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 606
Score = 387 bits (195), Expect = e-105
Identities = 337/383 (87%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 422 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 363
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 362 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 303
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 302 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 243
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 242 caaagccactaaacgcctctctcagtttcatgtcatcaacaccccatgaaagaccaccaa 183
Query: 631 taaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaagagccaccag 690
||||||||||| ||||||||||| |||||||||||||| |||||||| |||| | |||
Sbjct: 182 cgaatagcttggtggacatgagccgagcagcattgaacacagcaggagacgagctagcag 123
Query: 691 tgataccgctcaccagagcactgtgccttagaaggccaccaagcttgttgaaggccgcca 750
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 122 cgacaccgctcgccagagcactgtgccttagaaggctgccaagcttgttgaaggccgcca 63
Query: 751 ttgcg-aacactaaacctgaggg 772
|| |||||||||||||||||
Sbjct: 62 ttttttaacactaaacctgaggg 40
Score = 54.0 bits (27), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 218 gtcctaaagttcattatttcaaatatcttg 247
||| ||||||||||||||||||||||||||
Sbjct: 548 gtcntaaagttcattatttcaaatatcttg 519
>gb|BE918079.1|BE918079 OV1_1_F07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 614
Score = 387 bits (195), Expect = e-105
Identities = 337/383 (87%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 414 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 355
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 354 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 295
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 294 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 235
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 234 caaagccactaaacgcctctctcagtttcatgtcatcaacaccccatgaaagaccaccaa 175
Query: 631 taaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaagagccaccag 690
||||||||||| ||||||||||| |||||||||||||| |||||||| |||| | |||
Sbjct: 174 cgaatagcttggtggacatgagccgagcagcattgaacacagcaggagacgagctagcag 115
Query: 691 tgataccgctcaccagagcactgtgccttagaaggccaccaagcttgttgaaggccgcca 750
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 114 cgacaccgctcgccagagcactgtgccttagaaggctgccaagcttgttgaaggccgcca 55
Query: 751 ttgcg-aacactaaacctgaggg 772
|| |||||||||||||||||
Sbjct: 54 ttttttaacactaaacctgaggg 32
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 613 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 555
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 554 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 511
>gb|BG558309.1|BG558309 RHIZ2_65_F05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 438
Score = 387 bits (195), Expect = e-105
Identities = 322/363 (88%), Gaps = 1/363 (0%)
Strand = Plus / Minus
Query: 411 ttagccatgttgacacgtacctgccgcccatcaatttccttgccatccattgcagaaata 470
||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 432 ttagcaatgttgacacgtaccggccgcccatcaatttccttgccatccattccagatata 373
Query: 471 gcttccttggcagcatcactgtcggagtagttcacaaagccaaagcctcttgacctccca 530
||| | ||||||||||||||| || |||||| ||||||||||||||||||||| |||||
Sbjct: 372 gctgcattggcagcatcactgctggtgtagttaacaaagccaaagcctcttgacttccca 313
Query: 531 gtctccctgtctgtgatcaccctcgcttcagtaacctctccaaagctgctaaatgcttct 590
|| |||||||| |||||||| | |||||||||||| |||||||||| |||||| || |||
Sbjct: 312 gtgtccctgtccgtgatcactcgcgcttcagtaacatctccaaagccgctaaacgcctct 253
Query: 591 cttagtttcacgtcatcaacaccccagtcaagaccaccaataaatagcttggtagacatg 650
|| ||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 252 ctcagtttcatgtcatcaacaccccatgaaagaccaccaacgaatagcttggtggacatg 193
Query: 651 agccgtgcagcattgaacactgcaggagaagagccaccagtgataccgctcaccagagca 710
||||| |||||||||||||| |||||||| |||| | ||| || ||||||| ||||||||
Sbjct: 192 agccgagcagcattgaacacagcaggagacgagctagcagcgacaccgctcgccagagca 133
Query: 711 ctgtgccttagaaggccaccaagcttgttgaaggccgccattgcg-aacactaaacctga 769
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 132 ctgtgccttagaaggctgccaagcttgttgaaggccgccattttttaacactaaacctga 73
Query: 770 ggg 772
|||
Sbjct: 72 ggg 70
>gb|CF759803.1|CF759803 DSAF1_51_D05.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_51_D05_A011 5', mRNA sequence
Length = 390
Score = 363 bits (183), Expect = 2e-098
Identities = 319/363 (87%), Gaps = 1/363 (0%)
Strand = Plus / Minus
Query: 411 ttagccatgttgacacgtacctgccgcccatcaatttccttgccatccattgcagaaata 470
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 390 ttagcaatgttgacacgtacgggccgcccatcaatttccttgccatccattccagatata 331
Query: 471 gcttccttggcagcatcactgtcggagtagttcacaaagccaaagcctcttgacctccca 530
||| | ||||||||||||||| || |||||| ||||||||||| ||||||||| |||||
Sbjct: 330 gctgcattggcagcatcactgctggtgtagttaacaaagccaaatcctcttgacttccca 271
Query: 531 gtctccctgtctgtgatcaccctcgcttcagtaacctctccaaagctgctaaatgcttct 590
|| |||||||| |||||||| | |||||||||||| |||||||||| ||||| || |||
Sbjct: 270 gtgtccctgtccgtgatcactcgcgcttcagtaacatctccaaagccactaaacgcctct 211
Query: 591 cttagtttcacgtcatcaacaccccagtcaagaccaccaataaatagcttggtagacatg 650
|| ||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 210 ctcagtttcatgtcatcaacaccccatgaaagaccaccaacgaatagcttggtggacatg 151
Query: 651 agccgtgcagcattgaacactgcaggagaagagccaccagtgataccgctcaccagagca 710
||||| |||||||||||||| |||||||| |||| | ||| || ||||||| ||||||||
Sbjct: 150 agccgagcagcattgaacacagcaggagacgagctagcagcgacaccgctcgccagagca 91
Query: 711 ctgtgccttagaaggccaccaagcttgttgaaggccgccattgcg-aacactaaacctga 769
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 90 ctgtgccttagaaggctgccaagcttgttgaaggccgccattttttaacactaaacctga 31
Query: 770 ggg 772
|||
Sbjct: 30 ggg 28
>gb|CF480342.1|CF480342 POL1_65_E01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_E01_A002 3', mRNA sequence
Length = 751
Score = 309 bits (156), Expect = 3e-082
Identities = 276/316 (87%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 444 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 385
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 384 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 325
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 324 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 265
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 264 caaagccactaaacgcctctctcagtttcatgtcatcaacaccccatgaaagaccaccaa 205
Query: 631 taaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaagagccaccag 690
||||||||||| ||||||||||| |||||||||||||| |||||||| |||| | |||
Sbjct: 204 cgaatagcttggtggacatgagccgagcagcattgaacacagcaggagacgagctagcag 145
Query: 691 tgataccgctcaccag 706
|| ||||||| ||||
Sbjct: 144 cgacaccgctcgccag 129
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 643 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 585
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 584 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 541
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 735 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 676
Query: 125 caatacgtaatattctgc 142
||||| |||||| |||||
Sbjct: 675 caataggtaatactctgc 658
>gb|AW565152.1|AW565152 LG1_328_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 561
Score = 246 bits (124), Expect = 3e-063
Identities = 211/240 (87%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 249 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 190
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 189 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 130
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 129 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 70
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct: 69 caaagccactaaacgcctctctcagtttcatgtcatcaacaccccatgaaagaccaccaa 10
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 448 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 390
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 389 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 346
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 540 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 481
Query: 125 caatacgtaatattctgc 142
||||| |||||| |||||
Sbjct: 480 caataggtaatactctgc 463
>gb|BG558317.1|BG558317 RHIZ2_65_G01.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 316
Score = 246 bits (124), Expect = 3e-063
Identities = 218/248 (87%), Gaps = 1/248 (0%)
Strand = Plus / Minus
Query: 526 tcccagtctccctgtctgtgatcaccctcgcttcagtaacctctccaaagctgctaaatg 585
||||||| |||||||| |||||||| | |||||||||||| |||||||||| |||||| |
Sbjct: 315 tcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctccaaagccgctaaacg 256
Query: 586 cttctcttagtttcacgtcatcaacaccccagtcaagaccaccaataaatagcttggtag 645
| ||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 255 cctctctcagtttcatgtcatcaacaccccatgaaagaccaccaacgaatagcttggtgg 196
Query: 646 acatgagccgtgcagcattgaacactgcaggagaagagccaccagtgataccgctcacca 705
|||||||||| |||||||||||||| |||||||| |||| | ||| || ||||||| |||
Sbjct: 195 acatgagccgagcagcattgaacacagcaggagacgagctagcagcgacaccgctcgcca 136
Query: 706 gagcactgtgccttagaaggccaccaagcttgttgaaggccgccattgcg-aacactaaa 764
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 135 gagcactgtgccttagaaggctgccaagcttgttgaaggccgccattttttaacactaaa 76
Query: 765 cctgaggg 772
||||||||
Sbjct: 75 cctgaggg 68
>gb|CF071358.1|CF071358 FE1_13_G10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_13_G10_A002 3', mRNA sequence
Length = 651
Score = 246 bits (124), Expect = 3e-063
Identities = 212/240 (88%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 285 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 226
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactgtcggagtagttcacaaagc 510
||||||||||| |||| |||||| | ||||||||||||||| || |||||| |||||||
Sbjct: 225 tgccatccattccagatatagctgcattggcagcatcactgctggtgtagttaacaaagc 166
Query: 511 caaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagtaacctctc 570
|||| ||||||||| ||||||| |||||||| |||||||| | |||||||||||| ||||
Sbjct: 165 caaatcctcttgacttcccagtgtccctgtccgtgatcactcgcgcttcagtaacatctc 106
Query: 571 caaagctgctaaatgcttctcttagtttcacgtcatcaacaccccagtcaagaccaccaa 630
|||||| ||||| || ||||| ||||||| ||||||||||||||| ||||| |||||||
Sbjct: 105 caaagccactaaacgcctctctcagtttcatgtcatcaacacccca-tcaagtccaccaa 47
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 484 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 426
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 425 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 382
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 576 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 517
Query: 125 caatacgtaatattctgc 142
||||| |||||| |||||
Sbjct: 516 caataggtaatactctgc 499
>gb|CW108718.1|CW108718 104_480_11097673_148_34499_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097673, DNA
sequence
Length = 557
Score = 155 bits (78), Expect = 9e-036
Identities = 117/130 (90%)
Strand = Plus / Plus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct: 3 accaccaacgaatagcttggtggacatgagccgagcagcattgaacacagcaggagacga 62
Query: 683 gccaccagtgataccgctcaccagagcactgtgccttagaaggccaccaagcttgttgaa 742
|| | ||| || ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 63 gctagcagcgacaccgctcgccagagcactgtgccttagaaggctgccaagcttgttgaa 122
Query: 743 ggccgccatt 752
||||||||||
Sbjct: 123 ggccgccatt 132
>gb|CW285750.1|CW285750 104_763_11410503_148_35507_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410503, DNA
sequence
Length = 670
Score = 135 bits (68), Expect = 9e-030
Identities = 98/108 (90%)
Strand = Plus / Plus
Query: 645 gacatgagccgtgcagcattgaacactgcaggagaagagccaccagtgataccgctcacc 704
||||||||||| |||||||||||||| |||||||| |||| | ||| || ||||||| ||
Sbjct: 2 gacatgagccgagcagcattgaacacagcaggagacgagctagcagcgacaccgctcgcc 61
Query: 705 agagcactgtgccttagaaggccaccaagcttgttgaaggccgccatt 752
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62 agagcactgtgccttagaaggctgccaagcttgttgaaggccgccatt 109
>gb|BG558023.1|BG558023 RHIZ2_65_F05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 425
Score = 129 bits (65), Expect = 5e-028
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 108 ggttccctgcaggtctgtcgttagcaatgttgacacgtaccggccgcccatcaatttcct 49
Query: 451 tgccatccattgcagaaatagcttccttggcagcatcactg 491
||||||||||| |||| |||||| | |||||||||||||||
Sbjct: 48 tgccatccattccagatatagctgcattggcagcatcactg 8
Score = 60.0 bits (30), Expect = 4e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 399 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 340
Query: 125 caatacgtaatattctgc 142
||||| | |||| |||||
Sbjct: 339 caataggcaatactctgc 322
Score = 60.0 bits (30), Expect = 4e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 218 gtcctaaagttcattatttcaaatatcttg 247
||||||||||||||||||||||||||||||
Sbjct: 234 gtcctaaagttcattatttcaaatatcttg 205
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaa 184
||||||||||||||||| |||| |||||||| |||| |||||
Sbjct: 307 atctaggagttccaacagttcaacataacacaaatatcaaaa 266
>gb|CW030031.1|CW030031 104_257_10500016_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500016, DNA
sequence
Length = 829
Score = 103 bits (52), Expect = 3e-020
Identities = 101/114 (88%), Gaps = 5/114 (4%)
Strand = Plus / Plus
Query: 792 gagaggcggcg-aacgagggggcgagctattgcggcgcggcttggggtttatgaaaggaa 850
||||||||||| |||| ||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 606 gagaggcggcggaacgggggggcgagtgaatgcggcgcggcttggggtttaagaaaggac 665
Query: 851 aaggacgggaaggcggctagggttttgctgcgcccttgcctctcgcagctttgg 904
|| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 666 --gg--gggaaggcggctagggttttgttgcgcccttgcctctcgcggctttgg 715
>gb|CW030032.1|CW030032 104_257_10500016_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500016, DNA
sequence
Length = 792
Score = 103 bits (52), Expect = 3e-020
Identities = 101/114 (88%), Gaps = 5/114 (4%)
Strand = Plus / Minus
Query: 792 gagaggcggcg-aacgagggggcgagctattgcggcgcggcttggggtttatgaaaggaa 850
||||||||||| |||| ||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 438 gagaggcggcggaacgggggggcgagtgaatgcggcgcggcttggggtttaagaaaggac 379
Query: 851 aaggacgggaaggcggctagggttttgctgcgcccttgcctctcgcagctttgg 904
|| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 378 --gg--gggaaggcggctagggttttgttgcgcccttgcctctcgcggctttgg 329
>gb|CF757765.1|CF757765 DSAF1_22_A07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_22_A07_A011 3', mRNA sequence
Length = 442
Score = 93.7 bits (47), Expect = 3e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 391 ggttcccagcaggtctctcattagccatgttgacacgtacctgccgcccatcaatttcct 450
||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 73 ggttccctgcaggtctgtcgttagcaatgttgacacgtacgggccgcccatcaatttcct 14
Query: 451 tgccatccatt 461
|||||||||||
Sbjct: 13 tgccatccatt 3
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 272 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 214
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 213 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 170
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 366 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 307
Query: 125 caata 129
|||||
Sbjct: 306 caata 302
>gb|CW438508.1|CW438508 fsbb001f156c23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156c23, DNA
sequence
Length = 618
Score = 79.8 bits (40), Expect = 4e-013
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 857 gggaaggcggctagggttttgctgcgcccttgcctctcgcagctttgg 904
||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 599 gggaaggcggctagggttttgttgcgcccttgcctctcgcggctttgg 552
>gb|CF429379.1|CF429379 PH1_21_H03.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_21_H03_A002 5', mRNA sequence
Length = 339
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 188 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 246
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 247 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 290
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 82 aatagatgcgtcttgcatttgcacttctcgaaggaaccaaaaccaatacgtaatattctg 141
|||| ||||| ||||||||||||||| ||||| |||||||||||||| |||||| ||||
Sbjct: 113 aatacatgcgacttgcatttgcacttaacgaagcaaccaaaaccaataggtaatactctg 172
Query: 142 c 142
|
Sbjct: 173 c 173
>gb|CF480187.1|CF480187 POL1_64_F12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F12_A002 3', mRNA sequence
Length = 651
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 539 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 481
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 480 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 437
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 631 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 572
Query: 125 caatacgtaatattctgc 142
||||| |||||| |||||
Sbjct: 571 caataggtaatactctgc 554
>gb|CF481449.1|CF481449 POL1_72_C04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_C04_A002 3', mRNA sequence
Length = 400
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 393 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 335
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 334 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 291
>gb|CF483621.1|CF483621 POL1_23_C07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_23_C07_A002 5', mRNA sequence
Length = 706
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 121 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 179
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 180 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 223
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 29 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 88
Query: 125 caatacgtaatattctgc 142
||||| |||||| |||||
Sbjct: 89 caataggtaatactctgc 106
>gb|CF484587.1|CF484587 POL1_26_F01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_26_F01_A002 3', mRNA sequence
Length = 523
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 345 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 287
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 286 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 243
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 437 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 378
Query: 125 caatacgtaatattctgc 142
||||| |||||| |||||
Sbjct: 377 caataggtaatactctgc 360
>gb|CF757112.1|CF757112 DSAF1_13_H08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_13_H08_A011 3', mRNA sequence
Length = 377
Score = 73.8 bits (37), Expect = 3e-011
Identities = 90/105 (85%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 207 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 149
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 148 aagccc-catgccaggtcctaaagttcattatttcaaatatcttg 105
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 65 tgtattcactcaatgggaatagatgcgtcttgcatttgcacttctcgaaggaaccaaaac 124
||||| ||||||| | |||| ||||| ||||||||||||||| ||||| |||||||||
Sbjct: 301 tgtatccactcaacagaaatacatgcgacttgcatttgcacttaacgaagcaaccaaaac 242
Query: 125 caata 129
|||||
Sbjct: 241 caata 237
>gb|DN552401.1|DN552401 pSHR-L_A12_C001 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 341
Score = 65.9 bits (33), Expect = 7e-009
Identities = 89/105 (84%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaacctgacaatgcttaacat 202
||||||||||||||||| |||| |||||||| |||| ||||| ||| || |||| ||||
Sbjct: 110 atctaggagttccaacagttcaacataacacaaatatcaaaatatga-aaggcttcacat 168
Query: 203 aaaacgtcataccaagtcctaaagttcattatttcaaatatcttg 247
|| | ||| || ||||||||||||||||||||||||||||||
Sbjct: 169 aagccc-catggcaggtcctaaagttcattatttcaaatatcttg 212
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 82 aatagatgcgtcttgcatttgcacttctcgaaggaaccaaaaccaatacgtaatattctg 141
|||| ||||| ||||||||||||||| ||||| |||||||||||||| |||||| ||||
Sbjct: 35 aatacatgcgacttgcatttgcacttaacgaagcaaccaaaaccaataggtaatactctg 94
Query: 142 c 142
|
Sbjct: 95 c 95
>gb|BG558030.1|BG558030 RHIZ2_65_G01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 294
Score = 60.0 bits (30), Expect = 4e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 218 gtcctaaagttcattatttcaaatatcttg 247
||||||||||||||||||||||||||||||
Sbjct: 101 gtcctaaagttcattatttcaaatatcttg 72
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 143 atctaggagttccaacaattcagcataacacgaatagcaaaa 184
||||||||||||||||| |||| |||||||| |||| |||||
Sbjct: 174 atctaggagttccaacagttcaacataacacaaatatcaaaa 133
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 94 ttgcatttgcacttctcgaaggaaccaaaaccaatacgtaatattctgc 142
|||||||||||||| ||||| |||||||||||||| | |||| |||||
Sbjct: 237 ttgcatttgcacttaacgaagcaaccaaaaccaataggcaatactctgc 189
>gb|BG241893.1|BG241893 RHIZ2_17_A03.b2_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 396
Score = 42.1 bits (21), Expect = 0.096
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagt 532
||||||||||| ||||| |||||||||||
Sbjct: 322 acaaagccaaaacctctagacctcccagt 294
>gb|CW246350.1|CW246350 104_707_11221306_116_37604_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221306, DNA
sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 393 ttcccagcaggtctctcattagcc 416
||||||||||||||||||| ||||
Sbjct: 639 ttcccagcaggtctctcatcagcc 616
>gb|AW680445.1|AW680445 WS1_5_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 296
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 278 acaaagccaaaacctctagacctcccag 251
>gb|BE362062.1|BE362062 DG1_84_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 598
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 316 acaaagccaaaacctctagacctcccag 289
>gb|BE594486.1|BE594486 PI1_33_H08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 318 acaaagccaaaacctctagacctcccag 291
>gb|BF655690.1|BF655690 FM1_47_F11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 401
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 315 acaaagccaaaacctctagacctcccag 288
>gb|BG102369.1|BG102369 RHIZ2_22_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 320 acaaagccaaaacctctagacctcccag 293
>gb|BG159039.1|BG159039 RHIZ2_17_A03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 412
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 321 acaaagccaaaacctctagacctcccag 294
>gb|BG606045.1|BG606045 RHIZ2_80_G03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccag 531
||||||||||| ||||| ||||||||||
Sbjct: 320 acaaagccaaaacctctagacctcccag 293
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 212,559
Number of Sequences: 832831
Number of extensions: 212559
Number of successful extensions: 59399
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59321
Number of HSP's gapped (non-prelim): 78
length of query: 990
length of database: 491,359,669
effective HSP length: 20
effective length of query: 970
effective length of database: 474,703,049
effective search space: 460461957530
effective search space used: 460461957530
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)