BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716207.2.2
(754 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD432106.1|CD432106 ETH1_26_A06.b1_A002 Ethylene-treated... 523 e-147
gb|CD432203.1|CD432203 ETH1_26_A06.g1_A002 Ethylene-treated... 523 e-147
gb|CF484027.1|CF484027 POL1_2_D10.g1_A002 Pollen Sorghum bi... 430 e-119
gb|AW679925.1|AW679925 WS1_33_E12.g1_A002 Water-stressed 1 ... 424 e-117
gb|AW745353.1|AW745353 WS1_33_E12.b1_A002 Water-stressed 1 ... 424 e-117
gb|CN147613.1|CN147613 WOUND1_50_G07.g1_A002 Wounded leaves... 319 2e-085
gb|CN137511.1|CN137511 OX1_57_F09.g1_A002 Oxidatively-stres... 311 5e-083
gb|BG948748.1|BG948748 LG1_330_B09.b1_A002 Light Grown 1 (L... 303 1e-080
gb|CX608695.1|CX608695 ANR1_40_E04.b1_A002 Anaerobic roots ... 295 3e-078
gb|CX608780.1|CX608780 ANR1_40_E04.g1_A002 Anaerobic roots ... 295 3e-078
gb|BE593549.1|BE593549 WS1_100_F02.b1_A002 Water-stressed 1... 276 3e-072
gb|BF656971.1|BF656971 OV2_19_D04.b1_A002 Ovary 2 (OV2) Sor... 270 2e-070
gb|BZ342419.1|BZ342419 ic83d06.b1 WGS-SbicolorF (JM107 adap... 260 2e-067
gb|BZ628144.1|BZ628144 ih58b12.b1 WGS-SbicolorF (DH5a methy... 260 2e-067
gb|CW281247.1|CW281247 104_756_11408071_148_35453_018 Sorgh... 260 2e-067
gb|CW056425.1|CW056425 104_298_10517676_115_30157 Sorghum m... 252 4e-065
gb|CW058776.1|CW058776 104_301_10518927_114_30160 Sorghum m... 252 4e-065
gb|CW200534.1|CW200534 104_626_11184106_148_36867_045 Sorgh... 252 4e-065
gb|CF772686.1|CF772686 DSBF1_38_B07.g1_A010 Drought-stresse... 242 4e-062
gb|CW321435.1|CW321435 104_814_11475549_148_35938_083 Sorgh... 238 6e-061
gb|BE352878.1|BE352878 LG1_295_E09.g1_A002 Light Grown 1 (L... 226 2e-057
gb|CN137437.1|CN137437 OX1_57_F09.b1_A002 Oxidatively-stres... 218 6e-055
gb|CD211819.1|CD211819 HS1_64_B01.g1_A012 Heat-shocked seed... 214 9e-054
gb|BG048004.1|BG048004 OV1_26_E03.g1_A002 Ovary 1 (OV1) Sor... 212 3e-053
gb|BG047650.1|BG047650 OV1_26_E03.b1_A002 Ovary 1 (OV1) Sor... 204 8e-051
gb|CW401589.1|CW401589 fsbb001f092h14f0 Sorghum methylation... 194 8e-048
gb|CW052880.1|CW052880 104_292_10515660_115_30190 Sorghum m... 186 2e-045
gb|CW052881.1|CW052881 104_292_10515660_115_30287 Sorghum m... 186 2e-045
gb|CW310460.1|CW310460 104_799_11469725_148_35749_021 Sorgh... 186 2e-045
gb|CW408461.1|CW408461 fsbb001f102f20f0 Sorghum methylation... 186 2e-045
gb|CW310459.1|CW310459 104_799_11469725_116_35745_021 Sorgh... 180 1e-043
gb|CW251260.1|CW251260 104_713_11223833_116_35064_067 Sorgh... 165 7e-039
gb|BE593343.1|BE593343 WS1_100_F02.g1_A002 Water-stressed 1... 159 5e-037
gb|CW052879.1|CW052879 104_292_10515660_114_30286 Sorghum m... 127 2e-027
gb|CW321434.1|CW321434 104_814_11475549_116_35934_083 Sorgh... 101 9e-020
gb|CW021136.1|CW021136 104_109_10409369_116_30501 Sorghum m... 98 1e-018
gb|CW215179.1|CW215179 104_647_11194405_148_37166_057 Sorgh... 96 6e-018
gb|CW281246.1|CW281246 104_756_11408071_116_35449_018 Sorgh... 92 9e-017
gb|CW401590.1|CW401590 fsbb001f092h14k0 Sorghum methylation... 74 2e-011
gb|CW397781.1|CW397781 fsbb001f086o24k0 Sorghum methylation... 72 8e-011
gb|CW251261.1|CW251261 104_713_11223833_148_35060_067 Sorgh... 68 1e-009
gb|CW052878.1|CW052878 104_292_10515660_114_30189 Sorghum m... 46 0.005
gb|CW057639.1|CW057639 104_299_10518329_114_30169 Sorghum m... 42 0.073
gb|CW206999.1|CW206999 104_635_11187883_116_36961_066 Sorgh... 42 0.073
gb|CW311012.1|CW311012 104_800_11470011_148_35757_010 Sorgh... 42 0.073
gb|CW432749.1|CW432749 fsbb001f147k02k0 Sorghum methylation... 42 0.073
gb|CW496636.1|CW496636 fsbb001f288p19f0 Sorghum methylation... 42 0.073
gb|BG559435.1|BG559435 RHIZ2_54_G07.b1_A003 Rhizome2 (RHIZ2... 42 0.073
gb|CD232735.1|CD232735 SS1_1_G02.g1_A012 Salt-stressed seed... 42 0.073
gb|CN148161.1|CN148161 WOUND1_54_C02.g1_A002 Wounded leaves... 42 0.073
>gb|CD432106.1|CD432106 ETH1_26_A06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_A06_A002 3', mRNA sequence
Length = 611
Score = 523 bits (264), Expect = e-147
Identities = 324/344 (94%)
Strand = Plus / Plus
Query: 65 cgagatggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccgg 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 83 cgagatggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccgg 142
Query: 125 tggtggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaa 184
||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct: 143 cggtggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggtgaacaa 202
Query: 185 cgcggtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaa 244
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 203 cgctgtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaagtacaa 262
Query: 245 gcaaatcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggag 304
||| |||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 263 gcagatcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgctcggag 322
Query: 305 ggccatcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagcca 364
||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 323 ggccatcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactcaagcca 382
Query: 365 gcagatctacaccagggcaaccaatacataaggatggggaagag 408
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 gcagatctacaccagggcaaccaatacctaaggatggggaagag 426
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 424 tctgccctctctgcaggaggagctcgtc---tttagaacagttgccatctttgtcaagag 480
||||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 433 tctgccctctctgtagtaggagctcgtcatctttagagcagttgtcatctttgtcaagag 492
Query: 481 -ttgccaatgttatgttac 498
|||| ||| |||||||||
Sbjct: 493 tttgctaatattatgttac 511
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 14 gccgcagacccctccccttcgcttccttccctagcgccg 52
||||||||| ||||||||||||| | |||||| ||||||
Sbjct: 14 gccgcagactcctccccttcgctccgttcccttgcgccg 52
>gb|CD432203.1|CD432203 ETH1_26_A06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_A06_A002 5', mRNA sequence
Length = 609
Score = 523 bits (264), Expect = e-147
Identities = 324/344 (94%)
Strand = Plus / Plus
Query: 65 cgagatggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccgg 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 85 cgagatggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccgg 144
Query: 125 tggtggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaa 184
||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct: 145 cggtggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggtgaacaa 204
Query: 185 cgcggtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaa 244
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 205 cgctgtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaagtacaa 264
Query: 245 gcaaatcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggag 304
||| |||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 265 gcagatcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgctcggag 324
Query: 305 ggccatcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagcca 364
||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 325 ggccatcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactcaagcca 384
Query: 365 gcagatctacaccagggcaaccaatacataaggatggggaagag 408
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 gcagatctacaccagggcaaccaatacctaaggatggggaagag 428
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 424 tctgccctctctgcaggaggagctcgtc---tttagaacagttgccatctttgtcaagag 480
||||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 435 tctgccctctctgtagtaggagctcgtcatctttagagcagttgtcatctttgtcaagag 494
Query: 481 -ttgccaatgttatgttac 498
|||| ||| |||||||||
Sbjct: 495 tttgctaatattatgttac 513
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 14 gccgcagacccctccccttcgcttccttccctagcgccg 52
||||||||| ||||||||||||| | |||||| ||||||
Sbjct: 16 gccgcagactcctccccttcgctccgttcccttgcgccg 54
>gb|CF484027.1|CF484027 POL1_2_D10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_2_D10_A002 5', mRNA sequence
Length = 502
Score = 430 bits (217), Expect = e-119
Identities = 280/301 (93%)
Strand = Plus / Minus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |
Sbjct: 502 aagcccgccaagtccggcggtggcaagcagaagaagaagaagtggagcaagggtaagcaa 443
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagctgctctcg 227
||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct: 442 aaggagaaggtgaacaacgctgtgctgttcgaccaggccacctgcgacaagctgctctct 383
Query: 228 gaggtgcccaagtacaagcaaatcaccccttccatcctctccgagcgtctgaggatcaac 287
|||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||
Sbjct: 382 gaggtgcccaagtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaat 323
Query: 288 ggctcccttgctcggagggccatcaaggacttgatggcgcgtggcctcattcggatggtc 347
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 322 ggctcccttgctcggagggccatcaaggacctgatggcgcgtggcctcatccggatggtc 263
Query: 348 tcggtccactcaagccagcagatctacaccagggcaaccaatacataaggatggggaaga 407
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 gctgtccactcaagccagcagatctacaccagggcaaccaatacctaaggatggggaaga 203
Query: 408 g 408
|
Sbjct: 202 g 202
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Minus
Query: 424 tctgccctctctgcaggaggagctcgtc---tttagaacagttgccatctttgtcaagag 480
||||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 195 tctgccctctctgtagtaggagctcgtcatctttagagcagttgtcatctttgtcaagag 136
Query: 481 -ttgccaatgttatgttac 498
|||| ||| |||||||||
Sbjct: 135 tttgctaatattatgttac 117
>gb|AW679925.1|AW679925 WS1_33_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 464
Score = 424 bits (214), Expect = e-117
Identities = 271/290 (93%)
Strand = Plus / Plus
Query: 119 gtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggt 178
|||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 9 gtccggcggtggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggt 68
Query: 179 aaacaacgcggtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaa 238
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 69 gaacaacgctgtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaa 128
Query: 239 gtacaagcaaatcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgc 298
||||||||| |||||||| ||| ||||||||||||| |||||||||| |||||||||||
Sbjct: 129 gtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgc 188
Query: 299 tcggagggccatcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactc 358
||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 189 tcggagggccatcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactc 248
Query: 359 aagccagcagatctacaccagggcaaccaatacataaggatggggaagag 408
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 aagccagcagatctacaccagggcaaccaatacctaaggatggggaagag 298
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 424 tctgccctctctgcaggaggagctcgtc---tttagaacagttgccatctttgtcaagag 480
||||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 305 tctgccctctctgtagtaggagctcgtcatctttagagcagttgtcatctttgtcaagag 364
Query: 481 -ttgccaatgttatgttac 498
|||| ||| |||||||||
Sbjct: 365 tttgctaatattatgttac 383
>gb|AW745353.1|AW745353 WS1_33_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 424 bits (214), Expect = e-117
Identities = 271/290 (93%)
Strand = Plus / Plus
Query: 119 gtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggt 178
|||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 9 gtccggcggtggcaagcagaagaagaagaagtggagcaagggtaagcaaaaggagaaggt 68
Query: 179 aaacaacgcggtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaa 238
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 69 gaacaacgctgtgctgttcgaccaggccacctacgacaagctgctctctgaggtgcccaa 128
Query: 239 gtacaagcaaatcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgc 298
||||||||| |||||||| ||| ||||||||||||| |||||||||| |||||||||||
Sbjct: 129 gtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaatggctcccttgc 188
Query: 299 tcggagggccatcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactc 358
||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 189 tcggagggccatcaaggacctgatggcgcgtggcctcatccggatggtcgctgtccactc 248
Query: 359 aagccagcagatctacaccagggcaaccaatacataaggatggggaagag 408
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 aagccagcagatctacaccagggcaaccaatacctaaggatggggaagag 298
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 424 tctgccctctctgcaggaggagctcgtc---tttagaacagttgccatctttgtcaagag 480
||||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 305 tctgccctctctgtagtaggagctcgtcatctttagagcagttgtcatctttgtcaagag 364
Query: 481 -ttgccaatgttatgttac 498
|||| ||| |||||||||
Sbjct: 365 tttgctaatattatgttac 383
>gb|CN147613.1|CN147613 WOUND1_50_G07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_G07_A002 5', mRNA sequence
Length = 528
Score = 319 bits (161), Expect = 2e-085
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 69 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggt 128
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 60 atggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggc 119
Query: 129 ggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcg 188
|| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||
Sbjct: 120 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcg 179
Query: 189 gtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaa 248
||||| ||||||||||| |||||||||||| || |||| ||||||||||||||||||||
Sbjct: 180 gtgctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcag 239
Query: 249 atcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggcc 308
|||||||| ||| |||||||||||||||| ||||| || || ||| | || |||||||||
Sbjct: 240 atcaccccatccgtcctctccgagcgtctcaggattaatggatccttggcacggagggcc 299
Query: 309 atcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagccagcag 368
|| ||||| ||||||| | || ||||| |||||||||| || || || |||||||||
Sbjct: 300 attaaggatctgatggcaagggggctcataaggatggtctctgttcattccagccagcag 359
Query: 369 atctacaccagggcaaccaatacat 393
|| ||||||||||||||||| ||||
Sbjct: 360 atatacaccagggcaaccaacacat 384
>gb|CN137511.1|CN137511 OX1_57_F09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_F09_A002 5', mRNA sequence
Length = 573
Score = 311 bits (157), Expect = 5e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 69 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggt 128
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 38 atggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggc 97
Query: 129 ggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcg 188
|| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||
Sbjct: 98 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcg 157
Query: 189 gtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaa 248
||||| ||||||||||| |||||||||||| || |||| ||||||||||||||||||||
Sbjct: 158 gtgctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcag 217
Query: 249 atcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggcc 308
|||||||| ||| |||||||||||||||| | ||| || || ||| | || |||||||||
Sbjct: 218 atcaccccatccgtcctctccgagcgtctcatgattaatggatccttggcacggagggcc 277
Query: 309 atcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagccagcag 368
|| ||||| ||||||| | || ||||| |||||||||| || || || |||||||||
Sbjct: 278 attaaggatctgatggcaagggggctcataaggatggtctctgttcattccagccagcag 337
Query: 369 atctacaccagggcaaccaatacat 393
|| ||||||||||||||||| ||||
Sbjct: 338 atatacaccagggcaaccaacacat 362
>gb|BG948748.1|BG948748 LG1_330_B09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 303 bits (153), Expect = 1e-080
Identities = 282/325 (86%)
Strand = Plus / Plus
Query: 69 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggt 128
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 27 atggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggc 86
Query: 129 ggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcg 188
|| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct: 87 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcg 146
Query: 189 gtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaa 248
||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 147 gtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcag 206
Query: 249 atcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggcc 308
|||||||| ||| | |||||||||||||| |||||||| || ||| | || |||||||||
Sbjct: 207 atcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacggagggcc 266
Query: 309 atcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagccagcag 368
|| ||||| ||||||| | || ||||| ||||| || | || || || |||||||||
Sbjct: 267 attaaggatctgatggcaagggggctcataaggatgatcgctgttcattccagccagcag 326
Query: 369 atctacaccagggcaaccaatacat 393
|| ||||||||||||||||| ||||
Sbjct: 327 atatacaccagggcaaccaacacat 351
>gb|CX608695.1|CX608695 ANR1_40_E04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_E04_A002 3', mRNA sequence
Length = 515
Score = 295 bits (149), Expect = 3e-078
Identities = 281/325 (86%)
Strand = Plus / Plus
Query: 69 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggt 128
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 17 atggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggc 76
Query: 129 ggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcg 188
|| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct: 77 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcg 136
Query: 189 gtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaa 248
||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 137 gtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcag 196
Query: 249 atcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggcc 308
|||||||| ||| | |||||||||||||| |||||||| || ||| | || ||| |||||
Sbjct: 197 atcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacggggggcc 256
Query: 309 atcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagccagcag 368
|| ||||| ||||||| | || ||||| ||||| || | || || || |||||||||
Sbjct: 257 attaaggatctgatggcaagggggctcataaggatgatcgctgttcattccagccagcag 316
Query: 369 atctacaccagggcaaccaatacat 393
|| ||||||||||||||||| ||||
Sbjct: 317 atatacaccagggcaaccaacacat 341
>gb|CX608780.1|CX608780 ANR1_40_E04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_E04_A002 5', mRNA sequence
Length = 535
Score = 295 bits (149), Expect = 3e-078
Identities = 281/325 (86%)
Strand = Plus / Plus
Query: 69 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggt 128
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 40 atggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggc 99
Query: 129 ggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcg 188
|| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct: 100 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcg 159
Query: 189 gtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaa 248
||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 160 gtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcag 219
Query: 249 atcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggcc 308
|||||||| ||| | |||||||||||||| |||||||| || ||| | || ||| |||||
Sbjct: 220 atcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacggggggcc 279
Query: 309 atcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagccagcag 368
|| ||||| ||||||| | || ||||| ||||| || | || || || |||||||||
Sbjct: 280 attaaggatctgatggcaagggggctcataaggatgatcgctgttcattccagccagcag 339
Query: 369 atctacaccagggcaaccaatacat 393
|| ||||||||||||||||| ||||
Sbjct: 340 atatacaccagggcaaccaacacat 364
>gb|BE593549.1|BE593549 WS1_100_F02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 325
Score = 276 bits (139), Expect = 3e-072
Identities = 227/257 (88%)
Strand = Plus / Plus
Query: 69 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggt 128
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 41 atggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggc 100
Query: 129 ggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcg 188
|| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct: 101 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcg 160
Query: 189 gtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaa 248
||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 161 gtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcag 220
Query: 249 atcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggcc 308
|||||||| ||| | |||||||||||||| |||||||| || ||| | || |||||||||
Sbjct: 221 atcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacggagggcc 280
Query: 309 atcaaggacttgatggc 325
|| |||| |||||||
Sbjct: 281 atnnaggatctgatggc 297
>gb|BF656971.1|BF656971 OV2_19_D04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 360
Score = 270 bits (136), Expect = 2e-070
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 229 aggtgcccaagtacaagcaaatcaccccttccatcctctccgagcgtctgaggatcaacg 288
||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||| |
Sbjct: 360 aggtgcccaagtacaagcagatcaccccctccgtcctctccgagcgcttgaggatcaatg 301
Query: 289 gctcccttgctcggagggccatcaaggacttgatggcgcgtggcctcattcggatggtct 348
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 300 gctcccttgctcggagggccatcaaggacttgatggcgcgtggcttcatccggatggtcg 241
Query: 349 cggtccactcaagccagcagatctacaccagggcaaccaatacataaggatggggaagag 408
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 240 ctgtccactcaagccagcagatctacaccagggcaaccaatacctaaggatggggaagag 181
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Minus
Query: 424 tctgccctctctgcaggaggagctcgtc---tttagaacagttgccatctttgtcaagag 480
||||||||||||| || ||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 174 tctgccctctctgtagtaggagctcgtcatctttagagcagttgtcatctttgtcaagag 115
Query: 481 -ttgccaatgttatgttac 498
|||| ||| |||||||||
Sbjct: 114 tttgctaatattatgttac 96
>gb|BZ342419.1|BZ342419 ic83d06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic83d06 5', DNA sequence
Length = 694
Score = 260 bits (131), Expect = 2e-067
Identities = 188/207 (90%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 412 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 471
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||
Sbjct: 472 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggt 531
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaat 250
||| ||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||
Sbjct: 532 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagat 591
Query: 251 caccccttccatcctctccgagcgtct 277
|||||| ||| ||||||||||||||||
Sbjct: 592 caccccatccgtcctctccgagcgtct 618
>gb|BZ628144.1|BZ628144 ih58b12.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih58b12 5', DNA sequence
Length = 828
Score = 260 bits (131), Expect = 2e-067
Identities = 188/207 (90%)
Strand = Plus / Minus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 582 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 523
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||
Sbjct: 522 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggt 463
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaat 250
||| ||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||
Sbjct: 462 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagat 403
Query: 251 caccccttccatcctctccgagcgtct 277
|||||| ||| ||||||||||||||||
Sbjct: 402 caccccatccgtcctctccgagcgtct 376
>gb|CW281247.1|CW281247 104_756_11408071_148_35453_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408071, DNA
sequence
Length = 607
Score = 260 bits (131), Expect = 2e-067
Identities = 188/207 (90%)
Strand = Plus / Minus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 504 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 445
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||
Sbjct: 444 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggt 385
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaat 250
||| ||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||
Sbjct: 384 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagat 325
Query: 251 caccccttccatcctctccgagcgtct 277
|||||| ||| ||||||||||||||||
Sbjct: 324 caccccatccgtcctctccgagcgtct 298
>gb|CW056425.1|CW056425 104_298_10517676_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517676, DNA
sequence
Length = 414
Score = 252 bits (127), Expect = 4e-065
Identities = 187/207 (90%)
Strand = Plus / Minus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 412 ggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggcgg 353
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 352 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggt 293
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaat 250
||| ||||||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct: 292 gctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagat 233
Query: 251 caccccttccatcctctccgagcgtct 277
|||||| ||| | ||||||||||||||
Sbjct: 232 caccccgtccgtgctctccgagcgtct 206
>gb|CW058776.1|CW058776 104_301_10518927_114_30160 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518927, DNA
sequence
Length = 609
Score = 252 bits (127), Expect = 4e-065
Identities = 187/207 (90%)
Strand = Plus / Minus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 240 ggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggcgg 181
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 180 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggt 121
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaat 250
||| ||||||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct: 120 gctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagat 61
Query: 251 caccccttccatcctctccgagcgtct 277
|||||| ||| | ||||||||||||||
Sbjct: 60 caccccgtccgtgctctccgagcgtct 34
>gb|CW200534.1|CW200534 104_626_11184106_148_36867_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184106, DNA
sequence
Length = 714
Score = 252 bits (127), Expect = 4e-065
Identities = 187/207 (90%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 30 ggccccgaagaaggataaggccccgccgccgtcgtccaagccggctaagtccggaggcgg 89
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 90 gaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggt 149
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaat 250
||| ||||||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct: 150 gctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagat 209
Query: 251 caccccttccatcctctccgagcgtct 277
|||||| ||| | ||||||||||||||
Sbjct: 210 caccccgtccgtgctctccgagcgtct 236
>gb|CF772686.1|CF772686 DSBF1_38_B07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_38_B07_A010 3', mRNA sequence
Length = 462
Score = 242 bits (122), Expect = 4e-062
Identities = 245/286 (85%)
Strand = Plus / Plus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
|||||||| |||||||| || || ||||| ||||||||||||||||||||||| ||||
Sbjct: 4 aagccggctaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcag 63
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagctgctctcg 227
||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 64 aaggagaaggtcaacaacgcggtgctcttcgaccaggccacctacgacaagttgctctcc 123
Query: 228 gaggtgcccaagtacaagcaaatcaccccttccatcctctccgagcgtctgaggatcaac 287
||||| |||||||||||||| |||||||| ||| | |||||||||||||| ||||||||
Sbjct: 124 gaggttcccaagtacaagcagatcaccccgtccgtgctctccgagcgtctcaggatcaat 183
Query: 288 ggctcccttgctcggagggccatcaaggacttgatggcgcgtggcctcattcggatggtc 347
|| ||| | || ||||||||||| ||||| ||||||| | || ||||| ||||| ||
Sbjct: 184 ggatccttggcacggagggccattaaggatctgatggcaagggggctcataaggatgatc 243
Query: 348 tcggtccactcaagccagcagatctacaccagggcaaccaatacat 393
| || || || ||||||||||| ||||||||||||||||| ||||
Sbjct: 244 gctgttcattccagccagcagatatacaccagggcaaccaacacat 289
>gb|CW321435.1|CW321435 104_814_11475549_148_35938_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475549, DNA
sequence
Length = 664
Score = 238 bits (120), Expect = 6e-061
Identities = 187/208 (89%), Gaps = 1/208 (0%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 18 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 77
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| | || |||| |||||| |||||| ||||
Sbjct: 78 gaagcagaagaagaagaagtggagcaagggtatgcagaaggggaaggtcaacaactcggt 137
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagca-aa 249
||| ||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||
Sbjct: 138 gctcttcgaccaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagaa 197
Query: 250 tcaccccttccatcctctccgagcgtct 277
||||||| ||| ||||||||||||||||
Sbjct: 198 tcaccccatccgtcctctccgagcgtct 225
>gb|BE352878.1|BE352878 LG1_295_E09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 428
Score = 226 bits (114), Expect = 2e-057
Identities = 225/262 (85%)
Strand = Plus / Plus
Query: 132 aagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtg 191
||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| |||||
Sbjct: 8 aagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaactcggtg 67
Query: 192 ctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatc 251
|| ||||| ||||| |||||||||||| || |||| |||||||||||||||||||| |||
Sbjct: 68 ctcttcgatcaggccacctacgacaagttggtctccgaggtgcccaagtacaagcagatc 127
Query: 252 accccttccatcctctccgagcgtctgaggatcaacggctcccttgctcggagggccatc 311
||||| ||| |||||||||||||||| ||||| || || ||| | || |||||||||||
Sbjct: 128 accccatccgtcctctccgagcgtctcaggattaatggatccttggcacggagggccatt 187
Query: 312 aaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaagccagcagatc 371
||||| ||||||| | || ||||| |||||||||| || || || |||||||||||
Sbjct: 188 aaggatctgatggcaagggggctcataaggatggtctctgttcattccagccagcagata 247
Query: 372 tacaccagggcaaccaatacat 393
||||||||||||||||| ||||
Sbjct: 248 tacaccagggcaaccaacacat 269
>gb|CN137437.1|CN137437 OX1_57_F09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_F09_A002 3', mRNA sequence
Length = 471
Score = 218 bits (110), Expect = 6e-055
Identities = 242/286 (84%)
Strand = Plus / Plus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||
Sbjct: 2 aagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaagcag 61
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagctgctctcg 227
||||||||||| |||||| |||||| ||||||||| | |||| ||||||| || ||||
Sbjct: 62 aaggagaaggtcaacaacttggtgctcttcgaccagcccaccttcgacaagttggtctcc 121
Query: 228 gaggtgcccaagtacaagcaaatcaccccttccatcctctccgagcgtctgaggatcaac 287
|||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||| ||
Sbjct: 122 gaggtgcccaagtacaagcagatcaccccatccgtcctctccgagcgtctcaggattaat 181
Query: 288 ggctcccttgctcggagggccatcaaggacttgatggcgcgtggcctcattcggatggtc 347
|| ||| || ||||||||||| ||||| ||| ||| | || ||||| ||||||||
Sbjct: 182 ggatcctcggcacggagggccattaaggatctgacggcaagggggctcataaggatggtc 241
Query: 348 tcggtccactcaagccagcagatctacaccagggcaaccaatacat 393
|| || || || ||||||||||| ||||||||||||||||| ||||
Sbjct: 242 tctgttcattccagccagcagatatacaccagggcaaccaacacat 287
>gb|CD211819.1|CD211819 HS1_64_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_B01_A012 5', mRNA sequence
Length = 551
Score = 214 bits (108), Expect = 9e-054
Identities = 185/209 (88%), Gaps = 5/209 (2%)
Strand = Plus / Plus
Query: 65 cgagatggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccgg 124
||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 85 cgagatggccctgaagaaggacaaggcccc--cgtcgtcgtcgaagcccgccaagtccgg 142
Query: 125 tggtggcaagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaa 184
||||||||| ||||||||||||||||||||| |||| |||||||||||| || ||
Sbjct: 143 cggtggcaag---tggaagaagaagtggagcaagggtaagcaaaaggagaaggtgaagaa 199
Query: 185 cgcggtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaa 244
||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 200 cgcggtgctgttcgacctggccacctacgacaagcttctctctcaggtgcccaagtacaa 259
Query: 245 gcaaatcaccccttccatcctctccgagc 273
||| |||||||| ||| |||| |||||||
Sbjct: 260 gcagatcaccccctccgtcctgtccgagc 288
>gb|BG048004.1|BG048004 OV1_26_E03.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 371
Score = 212 bits (107), Expect = 3e-053
Identities = 215/251 (85%)
Strand = Plus / Plus
Query: 143 gaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgacca 202
|||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 8 gaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgcggtgctcttcgacca 67
Query: 203 ggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccat 262
||| |||||||||||| ||||||| ||||| |||||||||||||| |||||||| ||| |
Sbjct: 68 ggccacctacgacaagttgctctccgaggttcccaagtacaagcagatcaccccgtccgt 127
Query: 263 cctctccgagcgtctgaggatcaacggctcccttgctcggagggccatcaaggacttgat 322
|||||||||||||| |||||||| || ||| | || ||||||||||| ||||| ||||
Sbjct: 128 gctctccgagcgtctcaggatcaatggatccttggcacggagggccattaaggatctgat 187
Query: 323 ggcgcgtggcctcattcggatggtctcggtccactcaagccagcagatctacaccagggc 382
||| | || ||||| ||||| || | || || || ||||||||||| |||||||||||
Sbjct: 188 ggcaagggggctcataaggatgatcgctgttcattccagccagcagatatacaccagggc 247
Query: 383 aaccaatacat 393
|||||| ||||
Sbjct: 248 aaccaacacat 258
>gb|BG047650.1|BG047650 OV1_26_E03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 430
Score = 204 bits (103), Expect = 8e-051
Identities = 215/251 (85%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 143 gaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgacca 202
|||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||||||
Sbjct: 8 gaagaagtggagcaagggtaagcagaaggagaaggtaa-caacgcggtgctcttcgacca 66
Query: 203 ggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccat 262
||| |||||||||||| ||||||| ||||| |||||||||||||| |||||||| ||| |
Sbjct: 67 ggccacctacgacaagttgctctccgaggttcccaagtacaagcagatcaccccgtccgt 126
Query: 263 cctctccgagcgtctgaggatcaacggctcccttgctcggagggccatcaaggacttgat 322
|||||||||||||| |||||||| || ||| | || ||||||||||| ||||| ||||
Sbjct: 127 gctctccgagcgtctcaggatcaatggatccttggcacggagggccattaaggatctgat 186
Query: 323 ggcgcgtggcctcattcggatggtctcggtccactcaagccagcagatctacaccagggc 382
||| | || ||||| ||||| || | || || || ||||||||||| |||||||||||
Sbjct: 187 ggcaagggggctcataaggatgatcgctgttcattccagccagcagatatacaccagggc 246
Query: 383 aaccaatacat 393
|||||| ||||
Sbjct: 247 aaccaacacat 257
>gb|CW401589.1|CW401589 fsbb001f092h14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092h14, DNA
sequence
Length = 541
Score = 194 bits (98), Expect = 8e-048
Identities = 155/174 (89%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 368 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccggaggcgg 427
Query: 131 caagcaaaagaagaagaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggt 190
||||| ||||||||||||||||||||||| |||| || |||||||| |||||| ||||
Sbjct: 428 gaagcagaagaagaagaagtggagcaagggcaagcagaatgagaaggtcaacaactcggt 487
Query: 191 gctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaa 244
||| ||||||| ||| ||||||||| ||||| || | |||||||||||||||||
Sbjct: 488 gctcttcgacccggccacctacgaccagctggtccccgaggtgcccaagtacaa 541
>gb|CW052880.1|CW052880 104_292_10515660_115_30190 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 535
Score = 186 bits (94), Expect = 2e-045
Identities = 121/130 (93%)
Strand = Plus / Minus
Query: 145 agaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgaccagg 204
|||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 403 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 344
Query: 205 ctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccatcc 264
| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||
Sbjct: 343 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 284
Query: 265 tctccgagcg 274
||||||||||
Sbjct: 283 tctccgagcg 274
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaag 146
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 535 aagcccgccaagtccggcggtggcaagcagaagaagaag 497
>gb|CW052881.1|CW052881 104_292_10515660_115_30287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 742
Score = 186 bits (94), Expect = 2e-045
Identities = 121/130 (93%)
Strand = Plus / Minus
Query: 145 agaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgaccagg 204
|||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 403 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 344
Query: 205 ctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccatcc 264
| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||
Sbjct: 343 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 284
Query: 265 tctccgagcg 274
||||||||||
Sbjct: 283 tctccgagcg 274
Score = 127 bits (64), Expect = 2e-027
Identities = 73/76 (96%)
Strand = Plus / Minus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 572 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 513
Query: 131 caagcaaaagaagaag 146
|||||| |||||||||
Sbjct: 512 caagcagaagaagaag 497
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 14 gccgcagacccctccccttcgcttccttccctagcgccg 52
||||||||| ||||||||||||| | |||||| ||||||
Sbjct: 727 gccgcagactcctccccttcgctccgttcccttgcgccg 689
>gb|CW310460.1|CW310460 104_799_11469725_148_35749_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469725, DNA
sequence
Length = 655
Score = 186 bits (94), Expect = 2e-045
Identities = 121/130 (93%)
Strand = Plus / Plus
Query: 145 agaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgaccagg 204
|||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 223 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 282
Query: 205 ctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccatcc 264
| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||
Sbjct: 283 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 342
Query: 265 tctccgagcg 274
||||||||||
Sbjct: 343 tctccgagcg 352
Score = 127 bits (64), Expect = 2e-027
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 54 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 113
Query: 131 caagcaaaagaagaag 146
|||||| |||||||||
Sbjct: 114 caagcagaagaagaag 129
>gb|CW408461.1|CW408461 fsbb001f102f20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102f20, DNA
sequence
Length = 698
Score = 186 bits (94), Expect = 2e-045
Identities = 121/130 (93%)
Strand = Plus / Plus
Query: 145 agaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgaccagg 204
|||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 226 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 285
Query: 205 ctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccatcc 264
| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||
Sbjct: 286 ccacctacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 345
Query: 265 tctccgagcg 274
||||||||||
Sbjct: 346 tctccgagcg 355
Score = 127 bits (64), Expect = 2e-027
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 57 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 116
Query: 131 caagcaaaagaagaag 146
|||||| |||||||||
Sbjct: 117 caagcagaagaagaag 132
>gb|CW310459.1|CW310459 104_799_11469725_116_35745_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469725, DNA
sequence
Length = 681
Score = 180 bits (91), Expect = 1e-043
Identities = 120/130 (92%)
Strand = Plus / Minus
Query: 145 agaagtggagcaagggaaagctaaaggagaaggtaaacaacgcggtgctgttcgaccagg 204
|||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 548 agaagtggagcaagggtaagcaaaaggagaaggtgaacaacgctgtgctgttcgaccagg 489
Query: 205 ctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcaccccttccatcc 264
| || ||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||
Sbjct: 488 ccacntacgacaagctgctctctgaggtgcccaagtacaagcagatcaccccctccgtcc 429
Query: 265 tctccgagcg 274
||||||||||
Sbjct: 428 tctccgagcg 419
>gb|CW251260.1|CW251260 104_713_11223833_116_35064_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223833, DNA
sequence
Length = 661
Score = 165 bits (83), Expect = 7e-039
Identities = 196/228 (85%), Gaps = 8/228 (3%)
Strand = Plus / Minus
Query: 288 ggctcccttgctcggagggccatcaaggacttgatggc-gcgtggcctcattcggatggt 346
|||||||| ||||||||||||||||||||||||||||| | ||| |||| | ||||||
Sbjct: 387 ggctccctggctcggagggccatcaaggacttgatggcagtgtgatgtcatcccgatggt 328
Query: 347 ctcggtccactcaagccagcagatctacaccagggcaaccaatacataaggatggggaag 406
||| || |||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 327 ctcagtgcactcaaggcagcaggtctacaccagggcaaccaatacctaaggatggggaag 268
Query: 407 aggtctaaaatg-cattgtctgccctctctgcaggaggagctcgt---ctttagaacagt 462
|||| | |||| | |||| | ||||||||| |||||||| || | ||||||||||||
Sbjct: 267 aggtgt--aatgcctttgttttccctctctgtaggaggaggtcttcaactttagaacagt 210
Query: 463 tgccatctttgtcaagag-ttgccaatgttatgttactggtgatgagt 509
|| ||||||||||||| | |||| ||||||||||||| |||||||||
Sbjct: 209 tgtcatctttgtcaagtgtttgctaatgttatgttacctgtgatgagt 162
>gb|BE593343.1|BE593343 WS1_100_F02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 329
Score = 159 bits (80), Expect = 5e-037
Identities = 179/212 (84%)
Strand = Plus / Plus
Query: 182 caacgcggtgctgttcgaccaggctacctacgacaagctgctctcggaggtgcccaagta 241
|||| ||||||| ||||||||||| |||||||||||| ||||||| ||||| ||||||||
Sbjct: 1 caacccggtgctcttcgaccaggccacctacgacaagttgctctccgaggttcccaagta 60
Query: 242 caagcaaatcaccccttccatcctctccgagcgtctgaggatcaacggctcccttgctcg 301
|||||| |||||||| ||| | |||||||||||||| |||||||| || ||| | || ||
Sbjct: 61 caagcagatcaccccgtccgtgctctccgagcgtctcaggatcaatggatccttggcacg 120
Query: 302 gagggccatcaaggacttgatggcgcgtggcctcattcggatggtctcggtccactcaag 361
||||||||| ||||| ||||||| | || ||||| ||||| || | || || || ||
Sbjct: 121 gagggccattaaggatctgatggcaagggggctcataaggatgatcgctgttcattccag 180
Query: 362 ccagcagatctacaccagggcaaccaatacat 393
||||||||| ||||||||||||||||| ||||
Sbjct: 181 ccagcagatatacaccagggcaaccaacacat 212
>gb|CW052879.1|CW052879 104_292_10515660_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 494
Score = 127 bits (64), Expect = 2e-027
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtgg 130
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 309 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagcccgccaagtccggcggtgg 368
Query: 131 caagcaaaagaagaag 146
|||||| |||||||||
Sbjct: 369 caagcagaagaagaag 384
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 14 gccgcagacccctccccttcgcttccttccctagcgccg 52
||||||||| ||||||||||||| | |||||| ||||||
Sbjct: 154 gccgcagactcctccccttcgctccgttcccttgcgccg 192
>gb|CW321434.1|CW321434 104_814_11475549_116_35934_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475549, DNA
sequence
Length = 476
Score = 101 bits (51), Expect = 9e-020
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 195 ttcgaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcacc 254
||||||||||| || ||||||||| || |||| |||||||||||||||||||| ||||||
Sbjct: 440 ttcgaccaggccacttacgacaagttggtctccgaggtgcccaagtacaagcagatcacc 381
Query: 255 ccttccatcctctccgagcgtct 277
|| ||| ||||||||||||||||
Sbjct: 380 ccatccgtcctctccgagcgtct 358
>gb|CW021136.1|CW021136 104_109_10409369_116_30501 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409369, DNA
sequence
Length = 532
Score = 97.6 bits (49), Expect = 1e-018
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 72 gccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtggc 131
||||||||||| || |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 452 gccccgaagaaagagaaggccccgccgccgtcgtccaagccggccaagtccggaagcggg 511
Query: 132 aagcaaaagaagaagaagtgg 152
||||| |||||||||||||||
Sbjct: 512 aagcagaagaagaagaagtgg 532
>gb|CW215179.1|CW215179 104_647_11194405_148_37166_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194405, DNA
sequence
Length = 664
Score = 95.6 bits (48), Expect = 6e-018
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 198 gaccaggctacctacgacaagctgctctcggaggtgcccaagtacaagcaaatcacccct 257
|||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||||||||
Sbjct: 664 gaccaggccacctacgacaagttgctctccgaggttcccaagtacaagcagatcaccccg 605
Query: 258 tccatcctctccgagcgtct 277
||| | ||||||||||||||
Sbjct: 604 tccgtgctctccgagcgtct 585
>gb|CW281246.1|CW281246 104_756_11408071_116_35449_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408071, DNA
sequence
Length = 360
Score = 91.7 bits (46), Expect = 9e-017
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 71 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccgg 124
||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 291 ggccccgaagaaggagaaggccccgccgccgtcgtccaagccggccaagtccgg 344
>gb|CW401590.1|CW401590 fsbb001f092h14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092h14, DNA
sequence
Length = 585
Score = 73.8 bits (37), Expect = 2e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 229 aggtgcccaagtacaagcaaatcaccccttccatcctctccgagcgtct 277
||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct: 585 aggtgcccaagtacaagcagatcaccccatccgtcctctccgagcgtct 537
>gb|CW397781.1|CW397781 fsbb001f086o24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086o24, DNA
sequence
Length = 789
Score = 71.9 bits (36), Expect = 8e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 75 ccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggtggtggcaag 134
||||| |||||||||||| |||||||| |||| |||| ||||||||| || |||| ||||
Sbjct: 340 ccgaacaaggacaaggcctcgccgccgccgtcaaagctggccaagtctggcggtgtcaag 399
Query: 135 caaaagaagaag 146
|| |||||||||
Sbjct: 400 cagaagaagaag 411
>gb|CW251261.1|CW251261 104_713_11223833_148_35060_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223833, DNA
sequence
Length = 651
Score = 67.9 bits (34), Expect = 1e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 288 ggctcccttgctcggagggccatcaaggacttgatggc 325
|||||||| |||||||||||||||||||||||||||||
Sbjct: 581 ggctccctggctcggagggccatcaaggacttgatggc 618
>gb|CW052878.1|CW052878 104_292_10515660_114_30189 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515660, DNA
sequence
Length = 321
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 14 gccgcagacccctccccttcgcttccttccctagcgccg 52
||||||||| ||||||||||||| | |||||| ||||||
Sbjct: 152 gccgcagactcctccccttcgctccgttcccttgcgccg 190
>gb|CW057639.1|CW057639 104_299_10518329_114_30169 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518329, DNA
sequence
Length = 434
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 213 ggccgcgccgccgtcgtcgaagccg 189
>gb|CW206999.1|CW206999 104_635_11187883_116_36961_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187883, DNA
sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 503 ggccgcgccgccgtcgtcgaagccg 527
>gb|CW311012.1|CW311012 104_800_11470011_148_35757_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470011, DNA
sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 543 ggccgcgccgccgtcgtcgaagccg 519
>gb|CW432749.1|CW432749 fsbb001f147k02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147k02, DNA
sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 585 ggccgcgccgccgtcgtcgaagccg 561
>gb|CW496636.1|CW496636 fsbb001f288p19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288p19, DNA
sequence
Length = 718
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 172 ggccgcgccgccgtcgtcgaagccg 196
>gb|BG559435.1|BG559435 RHIZ2_54_G07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 276 ggccgcgccgccgtcgtcgaagccg 252
>gb|CD232735.1|CD232735 SS1_1_G02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_1_G02_A012 5', mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 275 ggccgcgccgccgtcgtcgaagccg 251
>gb|CN148161.1|CN148161 WOUND1_54_C02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_54_C02_A002 5', mRNA sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.073
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ggccccgccgccgtcgtcgaagccg 113
|||| ||||||||||||||||||||
Sbjct: 272 ggccgcgccgccgtcgtcgaagccg 248
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 253,746
Number of Sequences: 832831
Number of extensions: 253746
Number of successful extensions: 83888
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83786
Number of HSP's gapped (non-prelim): 83
length of query: 754
length of database: 491,359,669
effective HSP length: 20
effective length of query: 734
effective length of database: 474,703,049
effective search space: 348432037966
effective search space used: 348432037966
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)