BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced ... 710 0.0
gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced ... 656 0.0
gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Mer... 634 e-180
gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Mer... 525 e-147
gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum met... 278 7e-073
gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorgh... 252 4e-065
gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorgh... 252 4e-065
gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorgh... 212 3e-053
gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorgh... 204 8e-051
gb|CW083473.1|CW083473 104_425_10944264_116_32355_084 Sorgh... 165 7e-039
gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sor... 165 7e-039
gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sor... 165 7e-039
gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/ce... 165 7e-039
gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/ce... 165 7e-039
gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/c... 165 7e-039
gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves... 165 7e-039
gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves... 165 7e-039
gb|CW246896.1|CW246896 104_707_11221527_116_35084_052 Sorgh... 103 2e-020
gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorgh... 78 1e-012
gb|CL164331.1|CL164331 104_358_10807835_114_31814_203 Sorgh... 46 0.005
gb|CL164332.1|CL164332 104_358_10807835_116_31815_203 Sorgh... 46 0.005
gb|CW046125.1|CW046125 104_283_10509983_114_30137 Sorghum m... 46 0.005
gb|CW460476.1|CW460476 fsbb001f207l02k0 Sorghum methylation... 46 0.005
gb|CW296834.1|CW296834 104_778_11461725_116_35630_083 Sorgh... 44 0.018
gb|CW296835.1|CW296835 104_778_11461725_148_35634_083 Sorgh... 44 0.018
gb|CW046126.1|CW046126 104_283_10509983_115_30138 Sorghum m... 42 0.071
gb|CW460475.1|CW460475 fsbb001f207l02f0 Sorghum methylation... 42 0.071
>gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 618
Score = 710 bits (358), Expect = 0.0
Identities = 468/501 (93%), Gaps = 9/501 (1%)
Strand = Plus / Plus
Query: 133 ccggagcgactcgccaccggcgcggaaaaggagggcggaggct---cgatggcggatgag 189
||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 82 ccggagcgactcgccgccggcgcggagaaggagggcggaggctaggcgatggcggatgag 141
Query: 190 aatcaggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aatcaggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatg 201
Query: 250 atgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgctt 309
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 202 atgagtgttaagaacaacacccaggtgctcatcaattgccgcaacaacaagaaactactt 261
Query: 310 ggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatg 369
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 ggccgggttcgcgcttttgatcgccactgtaacatggtgctcgagaacgtgcgggagatg 321
Query: 370 tggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggat 429
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggacagaggtccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggat 381
Query: 430 agattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccg 489
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 382 agattcatcagcaagatgttcctcaggggcgactcggtcatcatcgttctgaggaaccca 441
Query: 490 aagtgatcgcccaaccagtcaccttgcagcagttatgccctttctctgggttcacggaat 549
|| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 aactgattgcccaaccagccaccttgcagc---tatgccctttctctgggttcacggaag 498
Query: 550 cc-gtgcctctgttgaaaaaactgtagcttatgtgtgtcttggcggattagctggttatc 608
|| || |||||||| ||||||||||||||||| ||| |||| |||||| ||||||| |
Sbjct: 499 ccaatgtctctgttg--aaaactgtagcttatgtatgttttggaggattaactggttacc 556
Query: 609 ttgaactgacgttcatgtgac 629
|||||||||||||||||||||
Sbjct: 557 ttgaactgacgttcatgtgac 577
>gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 656 bits (331), Expect = 0.0
Identities = 426/454 (93%), Gaps = 9/454 (1%)
Strand = Plus / Plus
Query: 133 ccggagcgactcgccaccggcgcggaaaaggagggcggaggct---cgatggcggatgag 189
||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 82 ccggagcgactcgccgccggcgcggagaaggagggcggaggctaggcgatggcggatgag 141
Query: 190 aatcaggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aatcaggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatg 201
Query: 250 atgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgctt 309
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 202 atgagtgttaagaacaacacccaggtgctcatcaattgccgcaacaacaagaaactactt 261
Query: 310 ggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatg 369
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 ggccgggttcgcgcttttgatcgccactgtaacatggtgctcgagaacgtgcgggagatg 321
Query: 370 tggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggat 429
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggacagaggtccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggat 381
Query: 430 agattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccg 489
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 382 agattcatcagcaagatgttcctcaggggcgactcggtcatcatcgttctgaggaaccca 441
Query: 490 aagtgatcgcccaaccagtcaccttgcagcagttatgccctttctctgggttcacggaat 549
|| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 aactgattgcccaaccagccaccttgcagc---tatgccctttctctgggttcacggaag 498
Query: 550 cc-gtgcctctgttgaaaaaactgtagcttatgt 582
|| || |||||||| |||||||||||||||||
Sbjct: 499 ccaatgtctctgttg--aaaactgtagcttatgt 530
>gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 457
Score = 634 bits (320), Expect = e-180
Identities = 413/441 (93%), Gaps = 6/441 (1%)
Strand = Plus / Plus
Query: 187 gagaatcaggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtccta 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gagaatcaggctggaaagaaagaggaggaggaatttagcacaggccccctgtcagtccta 60
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 atgatgagtgttaagaacaacacccaggtgctcatcaattgccgcaacaacaagaagcta 120
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 cttggccgggttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgggag 180
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtggacagaggtccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 240
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct: 241 gatagattcatcagcaagatgttcctcaggggtgactcggtcatcatcgtgctgaagaac 300
Query: 487 ccgaagtgatcgcccaaccagtcaccttgcagcagttatgccctttctctgggttcacgg 546
|| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 301 ccaaactgatcgcccaaccagccaccttgcagc---tatgccctttctctgggttcacgg 357
Query: 547 aatcc-gtgcctctgttgaaaaaactgtagcttatgtgtgtcttggcggattagctggtt 605
|| || || |||||||| ||||||||||||||||| ||| ||| |||||| ||||||
Sbjct: 358 aagccaatgtctctgttg--aaaactgtagcttatgtatgttctggaggattaactggtt 415
Query: 606 atcttgaactgacgttcatgt 626
| |||||||||||||||||||
Sbjct: 416 accttgaactgacgttcatgt 436
>gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 390
Score = 525 bits (265), Expect = e-147
Identities = 300/311 (96%), Gaps = 3/311 (0%)
Strand = Plus / Plus
Query: 133 ccggagcgactcgccaccggcgcggaaaaggagggcggaggct---cgatggcggatgag 189
||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 79 ccggagcgactcgccgccggcgcggagaaggagggcggaggctaggcgatggcggatgag 138
Query: 190 aatcaggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatg 249
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 139 aatcaggctggaaagaaagaggaggaggaatttagcacaggccccctgtcagtcctaatg 198
Query: 250 atgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgctt 309
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 199 atgagtgttaagaacaacacccaggtgctcatcaattgccgcaacaacaagaagctactt 258
Query: 310 ggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatg 369
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 ggccgggttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgggagatg 318
Query: 370 tggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggat 429
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggacagaggtccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggat 378
Query: 430 agattcatcag 440
|||||||||||
Sbjct: 379 agattcatcag 389
>gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431932, DNA
sequence
Length = 758
Score = 278 bits (140), Expect = 7e-073
Identities = 214/236 (90%), Gaps = 6/236 (2%)
Strand = Plus / Plus
Query: 395 agggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctca 454
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 418 agggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatgttcctca 477
Query: 455 ggggcgactcggtcatcatagtgctgaggaacccgaagtgatcgcccaaccagtcacctt 514
|||||||||||||||||| || ||||||||||| || |||| |||||||||| ||||||
Sbjct: 478 ngggcgactcggtcatcatcgttctgaggaacccaaactgattgcccaaccagccacctt 537
Query: 515 gcagcagttatgccctttctctgggttcacggaatcc-gtgcctctgttgaaaaaactgt 573
||||| |||||||||||||||||||||||||| || || |||||||| ||||||||
Sbjct: 538 gcagc---tatgccctttctctgggttcacggaagccaatgtctctgttg--aaaactgt 592
Query: 574 agcttatgtgtgtcttggcggattagctggttatcttgaactgacgttcatgtgac 629
||||||||| ||| |||| |||||| ||||||| ||||||||||||||||||||||
Sbjct: 593 agcttatgtatgttttggaggattaactggttaccttgaactgacgttcatgtgac 648
Score = 167 bits (84), Expect = 2e-039
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 271 caggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgat 330
||||| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 198 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 257
Query: 331 cgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagag 378
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 258 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagag 305
>gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 679
Score = 252 bits (127), Expect = 4e-065
Identities = 159/169 (94%), Gaps = 3/169 (1%)
Strand = Plus / Minus
Query: 380 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 121
Query: 440 gtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgatcgc 499
| |||||||||||||||||||||||||||||||| || ||||||||||| || |||| ||
Sbjct: 120 gcaagatgttcctcaggggcgactcggtcatcatcgttctgaggaacccaaactgattgc 61
Query: 500 ccaaccagtcaccttgcagcagttatgccctttctctgggttcacggaa 548
|||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 60 ccaaccagccaccttgcagc---tatgccctttctctgggttcacggaa 15
Score = 167 bits (84), Expect = 2e-039
Identities = 102/108 (94%)
Strand = Plus / Minus
Query: 271 caggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgat 330
||||| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 385 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 326
Query: 331 cgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagag 378
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagag 278
>gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 629
Score = 252 bits (127), Expect = 4e-065
Identities = 159/169 (94%), Gaps = 3/169 (1%)
Strand = Plus / Minus
Query: 380 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 122
Query: 440 gtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgatcgc 499
| |||||||||||||||||||||||||||||||| || ||||||||||| || |||| ||
Sbjct: 121 gcaagatgttcctcaggggcgactcggtcatcatcgttctgaggaacccaaactgattgc 62
Query: 500 ccaaccagtcaccttgcagcagttatgccctttctctgggttcacggaa 548
|||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 ccaaccagccaccttgcagc---tatgccctttctctgggttcacggaa 16
Score = 167 bits (84), Expect = 2e-039
Identities = 102/108 (94%)
Strand = Plus / Minus
Query: 271 caggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgat 330
||||| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 386 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 327
Query: 331 cgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagag 378
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagag 279
>gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 738
Score = 212 bits (107), Expect = 3e-053
Identities = 195/219 (89%), Gaps = 8/219 (3%)
Strand = Plus / Plus
Query: 380 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 581
Query: 440 gtaagatgttcctcaggggcgactcggtcatcatagtgctgagg-aacccgaagtgatcg 498
| ||||||||||||| |||||||||||||||||| || |||||| ||||| || |||| |
Sbjct: 582 gcaagatgttcctcangggcgactcggtcatcatcgttctgaggaaaccccaactgat-g 640
Query: 499 cccaaccagtcaccttgcagcagttatgccctttctctgggttcacggaatcc-gtgcct 557
||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||
Sbjct: 641 cccaacccagcaccttgcagc---tatgccctttctctggggtcacggaagccaatgtct 697
Query: 558 ctgttgaaaaaactgtagcttatgtgtgtcttggcggat 596
|||||| ||||||||||||||||| ||| |||| ||||
Sbjct: 698 ctgttg--aaaactgtagcttatgtatgttttggaggat 734
Score = 167 bits (84), Expect = 2e-039
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 271 caggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgat 330
||||| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 317 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 376
Query: 331 cgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagag 378
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagag 424
>gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 680
Score = 204 bits (103), Expect = 8e-051
Identities = 146/160 (91%), Gaps = 3/160 (1%)
Strand = Plus / Plus
Query: 380 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatca 583
Query: 440 gtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaagtgatcgc 499
| ||||||||||||| |||||||||||||||||| || ||||||||||| || |||
Sbjct: 584 gcaagatgttcctcangggcgactcggtcatcatcgttctgaggaacccaaactgaattg 643
Query: 500 ccaaccagtcaccttgcagcagttatgccctttctctggg 539
|||||||| ||||||||||| |||||||||||||||||
Sbjct: 644 ccaaccagccaccttgcagc---tatgccctttctctggg 680
Score = 167 bits (84), Expect = 2e-039
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 271 caggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgat 330
||||| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 319 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 378
Query: 331 cgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagag 378
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 379 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagag 426
>gb|CW083473.1|CW083473 104_425_10944264_116_32355_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 609
Score = 165 bits (83), Expect = 7e-039
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 193 caggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 caggctggaaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatg 217
Query: 253 agtgttaagaacaacacccaggt 275
|||||||||||||||||||||||
Sbjct: 218 agtgttaagaacaacacccaggt 240
>gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 94 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 153
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 154 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 213
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 214 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 273
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 274 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 333
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 334 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 384
>gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 74 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 133
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 134 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 193
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 194 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 253
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 254 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 313
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 314 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 364
>gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 3', mRNA sequence
Length = 657
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 35 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 94
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 95 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 154
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 155 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 214
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 215 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 274
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 275 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 325
>gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 5', mRNA sequence
Length = 664
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 130 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 189
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 190 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 249
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 250 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 309
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 310 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 369
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 370 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 420
>gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_19_H12_A007 5', mRNA sequence
Length = 569
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 121 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 180
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 181 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 240
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 241 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 300
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 301 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 360
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 361 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 411
>gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 3', mRNA sequence
Length = 600
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 61 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 120
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 121 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 180
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 181 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 240
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 241 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 300
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 301 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 351
>gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 5', mRNA sequence
Length = 661
Score = 165 bits (83), Expect = 7e-039
Identities = 239/291 (82%)
Strand = Plus / Plus
Query: 201 aaagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaa 260
|||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||
Sbjct: 105 aaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaa 164
Query: 261 gaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcg 320
|||||| || ||||| || ||||| ||||| |||||||||||||||||||| || || |
Sbjct: 165 gaacaatactcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgag 224
Query: 321 tgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagat 380
|| |||||||| || || |||||||| |||||||| || | ||||||||||| ||| |
Sbjct: 225 agcctttgatcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggt 284
Query: 381 ccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcag 440
|| ||||| || || ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 285 accaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataag 344
Query: 441 taagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
|||||||||||| | || || ||||||||||| || || |||||||||||
Sbjct: 345 caagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaa 395
>gb|CW246896.1|CW246896 104_707_11221527_116_35084_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 710
Score = 103 bits (52), Expect = 2e-020
Identities = 116/133 (87%), Gaps = 7/133 (5%)
Strand = Plus / Minus
Query: 498 gcccaaccagtcaccttgcagcagttatgccctttctctgggttcacggaatccg-tgcc 556
|||||||||| ||||||||||| |||||| ||||||||||||||||||| || || |
Sbjct: 697 gcccaaccagccaccttgcagc---tatgcc-tttctctgggttcacggaagccaatgtc 642
Query: 557 tctgttgaaaaaactgtagcttatgtgtgtcttggcggattagctggttatcttgaactg 616
||||||||||| ||||||||||||| ||| ||| |||||| ||||||| |||||||||
Sbjct: 641 tctgttgaaaa--ctgtagcttatgtatgttttgagggattaactggttaccttgaactg 584
Query: 617 acgttcatgtgac 629
|||||||||||||
Sbjct: 583 acgttcatgtgac 571
>gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011572, DNA
sequence
Length = 705
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 397 ggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcagg 456
||||| ||||||||||| || |||||||| ||||| ||||| || |||||||||||| |
Sbjct: 502 ggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgttcctccgt 561
Query: 457 ggcgactcggtcatcatagtgctgaggaacccgaa 491
|| || ||||||||||| || || |||||||||||
Sbjct: 562 ggggattcggtcatcattgttctcaggaacccgaa 596
Score = 61.9 bits (31), Expect = 8e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||| ||||| |||||||||||||||||||| || || | || |||||||| || ||
Sbjct: 294 atcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttgatcggcattgc 353
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggac 374
|||||||| |||||||| || | |||||||||||
Sbjct: 354 aacatggttctcgagaatgttagggagatgtggac 388
>gb|CL164331.1|CL164331 104_358_10807835_114_31814_203 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807835, DNA
sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 133 ccggagcgactcgccaccggcgcggaaaagg 163
||||||||||||||| |||||||||| ||||
Sbjct: 683 ccggagcgactcgccgccggcgcggagaagg 653
Score = 42.1 bits (21), Expect = 0.071
Identities = 32/35 (91%), Gaps = 3/35 (8%)
Strand = Plus / Minus
Query: 161 aggagggcggaggct---cgatggcggatgagaat 192
||||||||||||||| |||||||||||||||||
Sbjct: 422 aggagggcggaggctaggcgatggcggatgagaat 388
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 701 ggagcgcaccagcaccacccggag 678
>gb|CL164332.1|CL164332 104_358_10807835_116_31815_203 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807835, DNA
sequence
Length = 541
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 133 ccggagcgactcgccaccggcgcggaaaagg 163
||||||||||||||| |||||||||| ||||
Sbjct: 426 ccggagcgactcgccgccggcgcggagaagg 456
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 39 cacgccgccgctcaaaccgcagaagggagaagagaagc 76
|||||||||||| |||||||||||| | |||| |||||
Sbjct: 323 cacgccgccgctaaaaccgcagaagagggaagggaagc 360
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 408 ggagcgcaccagcaccacccggag 431
>gb|CW046125.1|CW046125 104_283_10509983_114_30137 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509983, DNA
sequence
Length = 675
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 133 ccggagcgactcgccaccggcgcggaaaagg 163
||||||||||||||| |||||||||| ||||
Sbjct: 335 ccggagcgactcgccgccggcgcggagaagg 305
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 39 cacgccgccgctcaaaccgcagaagggagaagagaagc 76
|||||||||||| |||||||||||| | |||| |||||
Sbjct: 438 cacgccgccgctaaaaccgcagaagagggaagggaagc 401
Score = 42.1 bits (21), Expect = 0.071
Identities = 32/35 (91%), Gaps = 3/35 (8%)
Strand = Plus / Minus
Query: 161 aggagggcggaggct---cgatggcggatgagaat 192
||||||||||||||| |||||||||||||||||
Sbjct: 74 aggagggcggaggctaggcgatggcggatgagaat 40
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 353 ggagcgcaccagcaccacccggag 330
>gb|CW460476.1|CW460476 fsbb001f207l02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207l02, DNA
sequence
Length = 533
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 133 ccggagcgactcgccaccggcgcggaaaagg 163
||||||||||||||| |||||||||| ||||
Sbjct: 300 ccggagcgactcgccgccggcgcggagaagg 330
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 39 cacgccgccgctcaaaccgcagaagggagaagagaagc 76
|||||||||||| |||||||||||| | |||| |||||
Sbjct: 197 cacgccgccgctaaaaccgcagaagagggaagggaagc 234
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 282 ggagcgcaccagcaccacccggag 305
>gb|CW296834.1|CW296834 104_778_11461725_116_35630_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461725, DNA
sequence
Length = 590
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 133 ccggagcgactcgccaccggcgcgga 158
||||||||||||||| ||||||||||
Sbjct: 560 ccggagcgactcgccgccggcgcgga 585
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 39 cacgccgccgctcaaaccgcagaagggagaagagaagc 76
|||||||||||| |||||||||||| | |||| |||||
Sbjct: 457 cacgccgccgctaaaaccgcagaagagggaagggaagc 494
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 542 ggagcgcaccagcaccacccggag 565
>gb|CW296835.1|CW296835 104_778_11461725_148_35634_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461725, DNA
sequence
Length = 534
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 39 cacgccgccgctcaaaccgcagaagggagaagagaagc 76
|||||||||||| |||||||||||| | |||| |||||
Sbjct: 132 cacgccgccgctaaaaccgcagaagagggaagggaagc 95
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 133 ccggagcgactcgccaccggcgcgga 158
||||||||||||||| ||||||||||
Sbjct: 29 ccggagcgactcgccgccggcgcgga 4
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 47 ggagcgcaccagcaccacccggag 24
>gb|CW046126.1|CW046126 104_283_10509983_115_30138 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509983, DNA
sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 cacgccgccgctcaaaccgcagaag 63
|||||||||||| ||||||||||||
Sbjct: 484 cacgccgccgctaaaaccgcagaag 508
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ggagcgcaccaacaccacccggag 131
||||||||||| ||||||||||||
Sbjct: 569 ggagcgcaccagcaccacccggag 592
>gb|CW460475.1|CW460475 fsbb001f207l02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207l02, DNA
sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.071
Identities = 32/35 (91%), Gaps = 3/35 (8%)
Strand = Plus / Minus
Query: 161 aggagggcggaggct---cgatggcggatgagaat 192
||||||||||||||| |||||||||||||||||
Sbjct: 445 aggagggcggaggctaggcgatggcggatgagaat 411
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,466
Number of Sequences: 832831
Number of extensions: 217466
Number of successful extensions: 57369
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57272
Number of HSP's gapped (non-prelim): 70
length of query: 739
length of database: 491,359,669
effective HSP length: 20
effective length of query: 719
effective length of database: 474,703,049
effective search space: 341311492231
effective search space used: 341311492231
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)