BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.12
(621 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1... 480 e-134
gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stresse... 450 e-125
gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stresse... 446 e-123
gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sor... 438 e-121
gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sor... 430 e-119
gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (L... 424 e-117
gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cD... 424 e-117
gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (L... 416 e-114
gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorgh... 242 3e-062
gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorgh... 220 1e-055
gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorgh... 220 1e-055
gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorgh... 200 1e-049
gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorgh... 198 4e-049
gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation... 167 2e-039
gb|AI724128.1|AI724128 RHIZ1_7_B02.y2_A001 Rhizome1 (RHIZ1)... 135 5e-030
gb|CF769744.1|CF769744 DSBF1_3_C07.g1_A010 Drought-stressed... 60 3e-007
gb|CF756080.1|CF756080 DSAF1_3_H08.b1_A011 Drought-stressed... 58 1e-006
gb|CF756152.1|CF756152 DSAF1_3_H08.g1_A011 Drought-stressed... 58 1e-006
gb|CF757474.1|CF757474 DSAF1_18_D03.g1_A011 Drought-stresse... 58 1e-006
gb|CF757918.1|CF757918 DSAF1_25_A04.g1_A011 Drought-stresse... 58 1e-006
gb|CF760293.1|CF760293 DSAF1_58_A02.b1_A011 Drought-stresse... 58 1e-006
gb|CF760343.1|CF760343 DSAF1_58_H09.b1_A011 Drought-stresse... 58 1e-006
gb|CF760865.1|CF760865 DSAF1_67_G04.b1_A011 Drought-stresse... 58 1e-006
gb|CF769495.1|CF769495 DSBF1_2_B11.b1_A010 Drought-stressed... 58 1e-006
gb|CF769581.1|CF769581 DSBF1_2_B11.g1_A010 Drought-stressed... 58 1e-006
gb|CF769668.1|CF769668 DSBF1_3_C07.b1_A010 Drought-stressed... 58 1e-006
gb|CF769669.1|CF769669 DSBF1_3_C08.b1_A010 Drought-stressed... 58 1e-006
gb|CF769745.1|CF769745 DSBF1_3_C08.g1_A010 Drought-stressed... 58 1e-006
gb|CF771805.1|CF771805 DSBF1_24_C11.g1_A010 Drought-stresse... 58 1e-006
gb|CW027664.1|CW027664 104_254_10498642_114_30395 Sorghum m... 40 0.24
gb|CW206819.1|CW206819 104_635_11187790_148_36966_085 Sorgh... 40 0.24
>gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 472
Score = 480 bits (242), Expect = e-134
Identities = 392/436 (89%), Gaps = 12/436 (2%)
Strand = Plus / Plus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 47 ggtgactaggagcaggagcaagagggattcgggatggccaagtcgaagaaccacacggcg 106
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 166
Query: 175 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 226
Query: 235 aacaagaagagtggcgaggctgagtccgaggagtaagat-gatggtgattgagtttgtgg 293
||||||||||| || ||||||||| | |||||||||||| | ||||| |||||||||||
Sbjct: 227 aacaagaagagcggtgaggctgaggcagaggagtaagatgggtggtggctgagtttgtgg 286
Query: 294 cgacaaatgcatctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctg 353
|||||||||||||| || ||||||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 287 cgacaaatgcatct-ttatatcgct-agagttttagttgtgaacttatttctcacttctg 344
Query: 354 tgtgactgtgatcaaaggagatccatcagttggtaccgaagtgtattttatgtcttgttg 413
| ||||||||| ||| ||||||||||||| | ||||| |||| |||||||||
Sbjct: 345 ------tatgatcaaagaagacccatcagttggtatcatagtgttttttcggtcttgttg 398
Query: 414 gttacctggaatttaattaaaaccatcagttgtatccttttgagaattgggcaattgatg 473
|| |||||| |||||||||||||||||||| |||||||| |||||||||| | ||||
Sbjct: 399 cctatctggaa-ttaattaaaaccatcagttg--tccttttgcgaattgggcactagatg 455
Query: 474 tgtcgttttctgttct 489
|||| |||||||||||
Sbjct: 456 tgtcattttctgttct 471
>gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_H03_A011 5', mRNA sequence
Length = 448
Score = 450 bits (227), Expect = e-125
Identities = 379/425 (89%), Gaps = 11/425 (2%)
Strand = Plus / Plus
Query: 26 tcacgccgccactgatctgctctgttgctggtgactaggagcagtagcgagagggattct 85
|||||||||| |||| |||| | | || ||||| ||||||||| ||| ||||||||||
Sbjct: 2 tcacgccgccgctgacctgccccgacgccggtgaataggagcaggagcaagagggattcg 61
Query: 86 ggatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacg 145
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 62 ggatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacg 121
Query: 146 gcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttc 205
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 122 gcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttc 181
Query: 206 tgaggaacttgaggtactcaaggaagggcaacaagaagagtggcgaggctgagtccgagg 265
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct: 182 tgaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagagg 241
Query: 266 agtaagatga-tggtgattgagtttgtggcgacaaatgcatctcttgtatcgctaagagt 324
||||| |||| ||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct: 242 agtaaaatgagtggtggctgagtttgtggcgacaaatgcatctcttgtatcgct-agggt 300
Query: 325 cttagctgtgaacttagttctcacttctgtgtgactgtgatcaaaggagat-ccatcagt 383
|||| |||||||||| |||||||||||| | ||||| |||||||| |||||| |
Sbjct: 301 tttagttgtgaacttaattctcacttctg------tatgatcgaaggagataccatcaat 354
Query: 384 tggtaccgaagtg--tattttatgtcttgttggttacctggaatttaattaaaaccatca 441
||||||| ||||| | |||| |||||||| | || |||||||||||||||||||||||
Sbjct: 355 tggtaccaaagtgatttttttttgtcttgtcgcctatctggaatttaattaaaaccatca 414
Query: 442 gttgt 446
|||||
Sbjct: 415 gttgt 419
>gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_C05_A010 3', mRNA sequence
Length = 426
Score = 446 bits (225), Expect = e-123
Identities = 377/423 (89%), Gaps = 11/423 (2%)
Strand = Plus / Plus
Query: 26 tcacgccgccactgatctgctctgttgctggtgactaggagcagtagcgagagggattct 85
|||||||||| |||| |||| | | || ||||| ||||||||| ||| ||||||||||
Sbjct: 2 tcacgccgccgctgacctgccccgacgccggtgaataggagcaggagcaagagggattcg 61
Query: 86 ggatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacg 145
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 62 ggatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaagaacg 121
Query: 146 gcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttc 205
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 122 gcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagtttc 181
Query: 206 tgaggaacttgaggtactcaaggaagggcaacaagaagagtggcgaggctgagtccgagg 265
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct: 182 tgaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagagg 241
Query: 266 agtaagatga-tggtgattgagtttgtggcgacaaatgcatctcttgtatcgctaagagt 324
||||| |||| ||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct: 242 agtaaaatgagtggtggctgagtttgtggcgacaaatgcatctcttgtatcgct-agggt 300
Query: 325 cttagctgtgaacttagttctcacttctgtgtgactgtgatcaaaggagat-ccatcagt 383
|||| |||||||||| |||||||||||| | ||||| |||||||| |||||| |
Sbjct: 301 tttagttgtgaacttaattctcacttctg------tatgatcgaaggagataccatcaat 354
Query: 384 tggtaccgaagtg--tattttatgtcttgttggttacctggaatttaattaaaaccatca 441
||||||| ||||| | |||| |||||||| | || |||||||||||||||||||||||
Sbjct: 355 tggtaccaaagtgatttttttttgtcttgtcgcctatctggaatttaattaaaaccatca 414
Query: 442 gtt 444
|||
Sbjct: 415 gtt 417
>gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 438 bits (221), Expect = e-121
Identities = 283/301 (94%), Gaps = 2/301 (0%)
Strand = Plus / Plus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||
Sbjct: 52 ggtgactaggagcaggagcaagagggattcggaatggccaagtcgaagaaccacacggcg 111
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 171
Query: 175 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 231
Query: 235 aacaagaagagtggcgaggctgagtccgaggagtaagat-gatggtgattgagtttgtgg 293
|||||||||||||| ||||||||| | |||||||||||| | ||||| |||||||||||
Sbjct: 232 aacaagaagagtggtgaggctgaggcagaggagtaagatgggtggtggctgagtttgtgg 291
Query: 294 cgacaaatgcatctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctg 353
|||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||||||
Sbjct: 292 cgacaaatgcatctcttgtatcact-agagttttagttgtgaacttatttctcacttctg 350
Query: 354 t 354
|
Sbjct: 351 t 351
>gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 430 bits (217), Expect = e-119
Identities = 282/301 (93%), Gaps = 2/301 (0%)
Strand = Plus / Plus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||| |
Sbjct: 52 ggtgactaggagcaggagcaagagggattcggaatggccaagtcgaagaaccacacggtg 111
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 171
Query: 175 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 231
Query: 235 aacaagaagagtggcgaggctgagtccgaggagtaagat-gatggtgattgagtttgtgg 293
|||||||||||||| ||||||||| | |||||||||||| | ||||| |||||||||||
Sbjct: 232 aacaagaagagtggtgaggctgaggcagaggagtaagatgggtggtggctgagtttgtgg 291
Query: 294 cgacaaatgcatctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctg 353
|||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||||||
Sbjct: 292 cgacaaatgcatctcttgtatcact-agagttttagttgtgaacttatttctcacttctg 350
Query: 354 t 354
|
Sbjct: 351 t 351
>gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 424 bits (214), Expect = e-117
Identities = 354/396 (89%), Gaps = 11/396 (2%)
Strand = Plus / Plus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||| |||| |||| ||| |||||||||| ||||||||||||| |||||||||||||||
Sbjct: 37 ggtgaataggtgcaggagcaagagggattcgggatggccaagtcaaagaaccacacggcg 96
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 156
Query: 175 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 234
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 157 acctccaccaaggggatggaccctaagtttctgaggaacttgaggtactcaaggaagggc 216
Query: 235 aacaagaagagtggcgaggctgagtccgaggagtaagatga-tggtgattgagtttgtgg 293
|||||||||||||| ||| |||| | ||||||||| |||| ||||| |||||||||||
Sbjct: 217 aacaagaagagtggtgagcttgaggcagaggagtaaaatgagtggtggctgagtttgtgg 276
Query: 294 cgacaaatgcatctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctg 353
||||||||||||||||||||||||| || || |||| |||||||||| ||||||||||||
Sbjct: 277 cgacaaatgcatctcttgtatcgct-agggttttagttgtgaacttaattctcacttctg 335
Query: 354 tgtgactgtgatcaaaggagat-ccatcagttggtaccgaagtg--tattttatgtcttg 410
| ||||| |||||||| |||||| |||||||| ||||| | |||| |||||||
Sbjct: 336 ------tatgatcgaaggagataccatcaattggtaccaaagtgatttttttttgtcttg 389
Query: 411 ttggttacctggaatttaattaaaaccatcagttgt 446
| | || ||||||||||||||||||||||||||||
Sbjct: 390 tcgcctatctggaatttaattaaaaccatcagttgt 425
>gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0111, mRNA sequence
Length = 371
Score = 424 bits (214), Expect = e-117
Identities = 333/368 (90%), Gaps = 11/368 (2%)
Strand = Plus / Minus
Query: 83 tctggatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaaga 142
|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 366 tctggatggccaagtcaaagaaccacacggcgcataaccagtcgtacaaggcgcacaaga 307
Query: 143 acggcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 306 acggcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggaccctaagt 247
Query: 203 ttctgaggaacttgaggtactcaaggaagggcaacaagaagagtggcgaggctgagtccg 262
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct: 246 ttctgaggaacttgaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcag 187
Query: 263 aggagtaagatga-tggtgattgagtttgtggcgacaaatgcatctcttgtatcgctaag 321
|||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 186 aggagtaaaatgagtggtggctgagtttgtggcgacaaatgcatctcttgtatcgct-ag 128
Query: 322 agtcttagctgtgaacttagttctcacttctgtgtgactgtgatcaaaggagat-ccatc 380
|| |||| |||||||||| |||||||||||| | ||||| |||||||| |||||
Sbjct: 127 ggttttagttgtgaacttaattctcacttctg------tatgatcgaaggagataccatc 74
Query: 381 agttggtaccgaagtg--tattttatgtcttgttggttacctggaatttaattaaaacca 438
| |||||||| ||||| | |||| |||||||| | || ||||||||||||||||||||
Sbjct: 73 aattggtaccaaagtgatttttttttgtcttgtcgcctatctggaatttaattaaaacca 14
Query: 439 tcagttgt 446
||||||||
Sbjct: 13 tcagttgt 6
>gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 419
Score = 416 bits (210), Expect = e-114
Identities = 353/396 (89%), Gaps = 11/396 (2%)
Strand = Plus / Plus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||| |||| |||| ||| |||||||||| ||||||||||||| |||||||||||||||
Sbjct: 23 ggtgaataggtgcaggagcaagagggattcgggatggccaagtcaaagaaccacacggcg 82
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 142
Query: 175 acctccaccaaggggatggacccgaagtttctgaggaacttgaggtactcaaggaagggc 234
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 143 acctccaccaaggggatggaccctaagtttctgaggaacttgaggtactcaaggaagggc 202
Query: 235 aacaagaagagtggcgaggctgagtccgaggagtaagatga-tggtgattgagtttgtgg 293
|||||||||||||| ||| |||| | ||||||||| |||| ||||| |||||||||||
Sbjct: 203 aacaagaagagtggtgagcttgaggcagaggagtaaaatgagtggtggctgagtttgtgg 262
Query: 294 cgacaaatgcatctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctg 353
||||||||||||||||||||||||| || || |||| |||||||||| ||||||||||||
Sbjct: 263 cgacaaatgcatctcttgtatcgct-agggttttagttgtgaacttaattctcacttctg 321
Query: 354 tgtgactgtgatcaaaggagat-ccatcagttggtaccgaagtg--tattttatgtcttg 410
| ||||| |||||||| |||||| |||||||| || || | |||| |||||||
Sbjct: 322 ------tatgatcgaaggagataccatcaattggtaccaaaatgatttttttttgtcttg 375
Query: 411 ttggttacctggaatttaattaaaaccatcagttgt 446
| | || ||||||||||||||||||||||||||||
Sbjct: 376 tcgcctatctggaatttaattaaaaccatcagttgt 411
>gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155469, DNA
sequence
Length = 744
Score = 242 bits (122), Expect = 3e-062
Identities = 286/334 (85%), Gaps = 15/334 (4%)
Strand = Plus / Minus
Query: 189 gatggacccgaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 248
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gatggaccctaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 507
Query: 249 cgaggctgagtccgaggagtaagatga-tggtgattgagtttgtggcgacaaatgcatct 307
||| |||| | ||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct: 506 tgagcttgaggcagaggagtaaaatgagtggtggctgagtttgtggcgacaaatgcatct 447
Query: 308 cttgtatcgctaagagtcttagctgtgaacttagttctcacttctgtgtgactgtgatca 367
||||||||||| || || |||| |||||||||| |||||||||||| | |||||
Sbjct: 446 cttgtatcgct-agggttttagttgtgaacttaattctcacttctg------tatgatcg 394
Query: 368 aaggagat-ccatcagttggtaccgaagtg--tattttatgtcttgttggttacctggaa 424
|||||||| |||||| |||||||| ||||| | |||| |||||||| | || ||||||
Sbjct: 393 aaggagataccatcaattggtaccaaagtgatttttttttgtcttgtcgcctatctggaa 334
Query: 425 tttaattaaaaccatcagttgtatccttttgagaattgggcaattgatgtgtcgttttct 484
|||||||||||||||||||||| | |||| |||||| || |||||||||| ||||||
Sbjct: 333 tttaattaaaaccatcagttgt---cctttgcgaattgtgcccttgatgtgtcattttct 277
Query: 485 gttctgccgtgatctgttatcagcattttacctg 518
||||| | ||||||||| |||| || ||||||||
Sbjct: 276 gttct-ctgtgatctgtcatcaccaatttacctg 244
>gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 673
Score = 220 bits (111), Expect = 1e-055
Identities = 129/135 (95%)
Strand = Plus / Plus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||
Sbjct: 354 ggtgactaggagcaggagcaagagggattcggaatggccaagtcgaagaaccacacggcg 413
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 473
Query: 175 acctccaccaagggg 189
|||||||||||||||
Sbjct: 474 acctccaccaagggg 488
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 10 gaaaccctaacactcatcacgccgccactgatctgc 45
||||||||||| ||| |||||||||| |||| ||||
Sbjct: 205 gaaaccctaactctcttcacgccgccgctgacctgc 240
>gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 548
Score = 220 bits (111), Expect = 1e-055
Identities = 129/135 (95%)
Strand = Plus / Minus
Query: 55 ggtgactaggagcagtagcgagagggattctggatggccaagtcgaagaaccacacggcg 114
||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||
Sbjct: 415 ggtgactaggagcaggagcaagagggattcggaatggccaagtcgaagaaccacacggcg 356
Query: 115 cataaccaatcgttcaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 174
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cataaccagtcgtacaaggcgcacaagaacggcatcaagaagcccaagcgccaccgccag 296
Query: 175 acctccaccaagggg 189
|||||||||||||||
Sbjct: 295 acctccaccaagggg 281
>gb|CW205320.1|CW205320 104_633_11187006_148_36931_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187006, DNA
sequence
Length = 596
Score = 200 bits (101), Expect = 1e-049
Identities = 217/251 (86%), Gaps = 11/251 (4%)
Strand = Plus / Plus
Query: 189 gatggacccgaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 248
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gatggaccctaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 411
Query: 249 cgaggctgagtccgaggagtaagatga-tggtgattgagtttgtggcgacaaatgcatct 307
||| |||| | ||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct: 412 tgagcttgaggcagaggagtaaaatgagtggtggctgagtttgtggcgacaaatgcatct 471
Query: 308 cttgtatcgctaagagtcttagctgtgaacttagttctcacttctgtgtgactgtgatca 367
||||||||||| || || |||| |||||||||| |||||||||||| | |||||
Sbjct: 472 cttgtatcgct-agggttttagttgtgaacttaattctcacttctg------tatgatcg 524
Query: 368 aaggagat-ccatcagttggtaccgaagtg--tattttatgtcttgttggttacctggaa 424
|||||||| |||||| |||||||| ||||| | |||| |||||||| | || ||||||
Sbjct: 525 aaggagataccatcaattggtaccaaagtgatttttttttgtcttgtcgcctatctggaa 584
Query: 425 tttaattaaaa 435
|||||||||||
Sbjct: 585 tttaattaaaa 595
>gb|CW205319.1|CW205319 104_633_11187006_116_36932_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187006, DNA
sequence
Length = 596
Score = 198 bits (100), Expect = 4e-049
Identities = 216/250 (86%), Gaps = 11/250 (4%)
Strand = Plus / Minus
Query: 189 gatggacccgaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 248
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gatggaccctaagtttctgaggaacttgaggtactcaaggaagggcaacaagaagagtgg 184
Query: 249 cgaggctgagtccgaggagtaagatga-tggtgattgagtttgtggcgacaaatgcatct 307
||| |||| | ||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct: 183 tgagcttgaggcagaggagtaaaatgagtggtggctgagtttgtggcgacaaatgcatct 124
Query: 308 cttgtatcgctaagagtcttagctgtgaacttagttctcacttctgtgtgactgtgatca 367
||||||||||| || || |||| |||||||||| |||||||||||| | |||||
Sbjct: 123 cttgtatcgct-agggttttagttgtgaacttaattctcacttctg------tatgatcg 71
Query: 368 aaggagat-ccatcagttggtaccgaagtg--tattttatgtcttgttggttacctggaa 424
|||||||| |||||| |||||||| ||||| | |||| |||||||| | || ||||||
Sbjct: 70 aaggagataccatcaattggtaccaaagtgatttttttttgtcttgtagcctatctggaa 11
Query: 425 tttaattaaa 434
||||||||||
Sbjct: 10 tttaattaaa 1
>gb|CW393605.1|CW393605 fsbb001f080l22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080l22, DNA
sequence
Length = 717
Score = 167 bits (84), Expect = 2e-039
Identities = 128/140 (91%), Gaps = 2/140 (1%)
Strand = Plus / Minus
Query: 216 gaggtactcaaggaagggcaacaagaagagtggcgaggctgagtccgaggagtaagat-g 274
||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |
Sbjct: 717 gaggtactcaaggaagggcaacaagaagagtggtgaggctgaggcagaggagtaagatgg 658
Query: 275 atggtgattgagtttgtggcgacaaatgcatctcttgtatcgctaagagtcttagctgtg 334
||||| ||||||||||||||||||||||||||||||||| || ||||| |||| ||||
Sbjct: 657 gtggtggctgagtttgtggcgacaaatgcatctcttgtatcact-agagttttagttgtg 599
Query: 335 aacttagttctcacttctgt 354
|||||| |||||||||||||
Sbjct: 598 aacttatttctcacttctgt 579
Score = 93.7 bits (47), Expect = 2e-017
Identities = 100/114 (87%), Gaps = 4/114 (3%)
Strand = Plus / Minus
Query: 405 gtcttgttggttacctggaatttaattaaaaccatcagttgtatccttttgagaattggg 464
||||||||| || |||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct: 534 gtcttgttgcctatctggaatt-aattaaaaccatcagttgt--ccttttgcgaattggg 478
Query: 465 caattgatgtgtcgttttctgttctgccgtgatctgttatcagcattttacctg 518
|| |||||||||| ||||||||||| | ||||||||| |||| || ||||||||
Sbjct: 477 cacttgatgtgtcattttctgttct-ctgtgatctgtcatcaccaatttacctg 425
>gb|AI724128.1|AI724128 RHIZ1_7_B02.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 215
Score = 135 bits (68), Expect = 5e-030
Identities = 175/206 (84%), Gaps = 11/206 (5%)
Strand = Plus / Plus
Query: 283 tgagtttgtggcgacaaatgcatctcttgtatcgctaagagtcttagctgtgaacttagt 342
||||||||||||||||||||||||| || |||||||| |||| |||| |||||||||| |
Sbjct: 21 tgagtttgtggcgacaaatgcatct-ttatatcgcta-gagttttagttgtgaacttatt 78
Query: 343 tctcacttctgtgtgactgtgatcaaaggagatccatcagttggtaccgaagtgtatttt 402
|||||||||||| ||| |||||| ||| ||||||||||||| | ||||| ||||
Sbjct: 79 tctcacttctgtatga------tcaaagaagacccatcagttggtatcatagtgtttttt 132
Query: 403 atgtcttgttggttacctggaatttaattaaaaccatcagttgtatccttttgagaattg 462
||||||||| || |||||||| |||||||||||||||||| |||||||| ||||||
Sbjct: 133 cggtcttgttgcctatctggaatt-aattaaaaccatcagttg--tccttttgcgaattg 189
Query: 463 ggcaattgatgtgtcgttttctgttc 488
|||| | |||||||| ||||||||||
Sbjct: 190 ggcactagatgtgtcattttctgttc 215
>gb|CF769744.1|CF769744 DSBF1_3_C07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C07_A010 3', mRNA sequence
Length = 147
Score = 60.0 bits (30), Expect = 3e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttc 351
|||||||||||||| |||| |||| |||||||||| ||||||||||
Sbjct: 1 ctcttgtatcgctatgagttttagttgtgaacttatttctcacttc 46
>gb|CF756080.1|CF756080 DSAF1_3_H08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_H08_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF756152.1|CF756152 DSAF1_3_H08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_H08_A011 3', mRNA sequence
Length = 141
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF757474.1|CF757474 DSAF1_18_D03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_18_D03_A011 3', mRNA sequence
Length = 141
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF757918.1|CF757918 DSAF1_25_A04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_25_A04_A011 3', mRNA sequence
Length = 129
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF760293.1|CF760293 DSAF1_58_A02.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_58_A02_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF760343.1|CF760343 DSAF1_58_H09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_58_H09_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF760865.1|CF760865 DSAF1_67_G04.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_67_G04_A011 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF769495.1|CF769495 DSBF1_2_B11.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B11_A010 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF769581.1|CF769581 DSBF1_2_B11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B11_A010 3', mRNA sequence
Length = 141
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF769668.1|CF769668 DSBF1_3_C07.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C07_A010 5', mRNA sequence
Length = 151
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 426 ttaattaaaaccatcagttgt 446
|||||||||||||||||||||
Sbjct: 113 ttaattaaaaccatcagttgt 133
>gb|CF769669.1|CF769669 DSBF1_3_C08.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C08_A010 5', mRNA sequence
Length = 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF769745.1|CF769745 DSBF1_3_C08.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_C08_A010 3', mRNA sequence
Length = 129
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CF771805.1|CF771805 DSBF1_24_C11.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_24_C11_A010 3', mRNA sequence
Length = 142
Score = 58.0 bits (29), Expect = 1e-006
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 306 ctcttgtatcgctaagagtcttagctgtgaacttagttctcacttctgt 354
|||||||||||||| |||| |||| |||||||||| |||||||||||||
Sbjct: 1 ctcttgtatcgcta-gagttttagttgtgaacttatttctcacttctgt 48
>gb|CW027664.1|CW027664 104_254_10498642_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498642, DNA
sequence
Length = 808
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 534 tctttagggcttgttcggtt 553
||||||||||||||||||||
Sbjct: 333 tctttagggcttgttcggtt 314
>gb|CW206819.1|CW206819 104_635_11187790_148_36966_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187790, DNA
sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 534 tctttagggcttgttcggtt 553
||||||||||||||||||||
Sbjct: 471 tctttagggcttgttcggtt 490
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,152
Number of Sequences: 832831
Number of extensions: 150152
Number of successful extensions: 41629
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41516
Number of HSP's gapped (non-prelim): 70
length of query: 621
length of database: 491,359,669
effective HSP length: 19
effective length of query: 602
effective length of database: 475,535,880
effective search space: 286272599760
effective search space used: 286272599760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)