BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.593
(1027 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 852 0.0
gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1... 660 0.0
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 607 e-172
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 496 e-138
gb|BE125178.1|BE125178 DG1_14_A08.b1_A002 Dark Grown 1 (DG1... 392 e-107
gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum met... 387 e-105
gb|CW371155.1|CW371155 fsbb001f046h18f0 Sorghum methylation... 301 7e-080
gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation... 244 1e-062
gb|AW923259.1|AW923259 DG1_50_D06.g1_A002 Dark Grown 1 (DG1... 163 4e-038
gb|BE358893.1|BE358893 DG1_32_E07.g1_A002 Dark Grown 1 (DG1... 161 2e-037
gb|BE358790.1|BE358790 DG1_32_E07.b1_A002 Dark Grown 1 (DG1... 127 2e-027
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 117 2e-024
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 117 2e-024
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 117 2e-024
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 117 2e-024
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 117 2e-024
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 117 2e-024
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 107 2e-021
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 107 2e-021
gb|CW022214.1|CW022214 104_161_10431706_1_30006 Sorghum met... 105 8e-021
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 98 2e-018
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 98 2e-018
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 94 3e-017
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 82 1e-013
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 82 1e-013
gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation... 74 3e-011
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 74 3e-011
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 74 3e-011
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 66 7e-009
gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorgh... 58 2e-006
gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced ... 58 2e-006
gb|AI723861.1|AI723861 RHIZ1_28_D10.y1_A001 Rhizome1 (RHIZ1... 56 7e-006
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 54 3e-005
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 54 3e-005
gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorgh... 54 3e-005
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 54 3e-005
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 54 3e-005
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 54 3e-005
gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation... 54 3e-005
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 54 3e-005
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 54 3e-005
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 54 3e-005
gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation... 52 1e-004
gb|CF480059.1|CF480059 POL1_63_B05.g1_A002 Pollen Sorghum b... 52 1e-004
gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum b... 52 1e-004
gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkal... 52 1e-004
gb|CL186365.1|CL186365 104_401_10900160_116_32413_030 Sorgh... 50 4e-004
gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorgh... 50 4e-004
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 48 0.002
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 48 0.002
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 48 0.002
gb|CW128639.1|CW128639 104_510_11114117_116_34756_025 Sorgh... 46 0.006
gb|CW318234.1|CW318234 104_810_11473841_116_35871_073 Sorgh... 46 0.006
gb|CW384480.1|CW384480 fsbb001f067i11k0 Sorghum methylation... 46 0.006
gb|BG464391.1|BG464391 EM1_69_B11.g1_A002 Embryo 1 (EM1) So... 46 0.006
gb|CW436968.1|CW436968 fsbb001f153n18f0 Sorghum methylation... 42 0.100
gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkal... 42 0.100
gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorgh... 40 0.39
gb|CL191324.1|CL191324 104_410_10906720_114_32533_060 Sorgh... 40 0.39
gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum m... 40 0.39
gb|CW110423.1|CW110423 104_483_11103696_148_34524_094 Sorgh... 40 0.39
gb|CW159279.1|CW159279 104_565_11149276_116_36410_010 Sorgh... 40 0.39
gb|CW163451.1|CW163451 104_571_11151468_148_36455_046 Sorgh... 40 0.39
gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorgh... 40 0.39
gb|CW265113.1|CW265113 104_734_11231683_116_35257_076 Sorgh... 40 0.39
gb|CW265114.1|CW265114 104_734_11231683_148_35261_076 Sorgh... 40 0.39
gb|CW266082.1|CW266082 104_735_11232237_116_35271_085 Sorgh... 40 0.39
gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorgh... 40 0.39
gb|CW302450.1|CW302450 104_786_11464725_116_35662_085 Sorgh... 40 0.39
gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation... 40 0.39
gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation... 40 0.39
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 40 0.39
gb|AW678309.1|AW678309 WS1_14_G01.g1_A002 Water-stressed 1 ... 40 0.39
gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 ... 40 0.39
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 40 0.39
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 40 0.39
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 40 0.39
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 40 0.39
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 40 0.39
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 40 0.39
gb|BG102665.1|BG102665 RHIZ2_35_G08.g1_A003 Rhizome2 (RHIZ2... 40 0.39
gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1... 40 0.39
gb|CD220568.1|CD220568 CCC1_68_B04.b1_A007 Callus culture/c... 40 0.39
gb|CD221837.1|CD221837 CCC1_71_F05.b1_A007 Callus culture/c... 40 0.39
gb|CD222476.1|CD222476 CCC1_22_B04.b1_A007 Callus culture/c... 40 0.39
gb|CD222500.1|CD222500 CCC1_22_B03.b1_A007 Callus culture/c... 40 0.39
gb|CD223155.1|CD223155 CCC1_26_G01.b1_A007 Callus culture/c... 40 0.39
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 40 0.39
gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/c... 40 0.39
gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/c... 40 0.39
gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/c... 40 0.39
gb|CD228493.1|CD228493 CCC1_8_E11.b1_A007 Callus culture/ce... 40 0.39
gb|CD431984.1|CD431984 ETH1_12_F04.b1_A002 Ethylene-treated... 40 0.39
gb|CD432114.1|CD432114 ETH1_26_H07.b1_A002 Ethylene-treated... 40 0.39
>gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_A10_A002 5', mRNA sequence
Length = 693
Score = 852 bits (430), Expect = 0.0
Identities = 583/634 (91%)
Strand = Plus / Plus
Query: 29 gagggctttagcgatggtcctgttcatggctggcgccgcgctgctcgccggggctgccgg 88
||||| ||| |||| ||| ||| || |||| ||||||||||||||||| | ||| | |||
Sbjct: 59 gagggttttggcgacggtgctggtcttggcaggcgccgcgctgctcgcggcggccggcgg 118
Query: 89 cgccggcgcgcagcagggcgtgtggagcatcatcacccggcccatgttccagagcatgct 148
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 119 cgccagcgcgaagcagggcgtgtggagcatcatcacgcggcccatgttccagagcatgct 178
Query: 149 gagccaccgcggcgacagcgggtgccagggcgccttctacacctacgacgccttcatcga 208
||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||
Sbjct: 179 gagccaccgcggcgacagcggttgccagggcgcgttctgcacctacgacgcgttcatcga 238
Query: 209 ggccgccagcaagttccccggcttcggcaccaccggcgacgagcagacgcgcaggcggga 268
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 239 ggccgccagcaagttccccggcttcggcaccaccggcgacgaccagacccgaaggcggga 298
Query: 269 gctcgccgccttcttcggccagacgtcccacgaaaccaccggtggatgggcgactgctcc 328
|||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||
Sbjct: 299 gctcgccgccttcttcggacagacgtcccacgaaactaccggtggatggccaactgctcc 358
Query: 329 ggatggaccgtttgcctggggatactgccgggtgaaggaacagaaacagacggacccacc 388
|| ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 359 gggtggacagtttgcctggggatactgccgggtgaaggaacagaaccccacggacccacc 418
Query: 389 ctactatggacgaggacccatacagctaactcataagtacaactacaggctcgccgggca 448
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct: 419 ctactatggacgaggacccatacagctaactcatgagtacaactacaggcaagctgggca 478
Query: 449 agcgctgaacctgaacctggtgggcgacccggacctggtggcgagagaccccgtggtagc 508
||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||
Sbjct: 479 agcgctgaacctgaacctggtgggcaacccggacctggtgtcgagcgaccccgtggtggc 538
Query: 509 cttcaagacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccacgc 568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 539 cttcaagacggccatctggttctggatgacgccgcagtcgccgaagccgtcgtgccacgc 598
Query: 569 cgtgatgaccggcgactggacgccgtccgccaccgaccgcgccgccgggaggctccccgg 628
||| ||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||
Sbjct: 599 cgtcatgaccggcagctggacgccctccgccgacgaccgcgccgcggggaggctccccgg 658
Query: 629 atatggcctcacctcgaacatcatcaacggcggg 662
|||||| | ||| | ||||||||||||||||||
Sbjct: 659 gtatggcgtgaccaccaacatcatcaacggcggg 692
>gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 660 bits (333), Expect = 0.0
Identities = 441/477 (92%)
Strand = Plus / Plus
Query: 29 gagggctttagcgatggtcctgttcatggctggcgccgcgctgctcgccggggctgccgg 88
||||| ||| |||| ||| ||| || |||| ||||||||||||||||| | ||| | |||
Sbjct: 44 gagggttttggcgacggtgctggtcttggcaggcgccgcgctgctcgcggcggccggcgg 103
Query: 89 cgccggcgcgcagcagggcgtgtggagcatcatcacccggcccatgttccagagcatgct 148
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 104 cgccagcgcgaagcagggcgtgtggagcatcatcacgcggcccatgttccagagcatgct 163
Query: 149 gagccaccgcggcgacagcgggtgccagggcgccttctacacctacgacgccttcatcga 208
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 164 gagccaccgcggcgacagcggttgccagggcgcgttctacacctacgacgcgttcatcga 223
Query: 209 ggccgccagcaagttccccggcttcggcaccaccggcgacgagcagacgcgcaggcggga 268
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 224 ggccgccagcaagttccccggcttcggcaccaccggcgacgaccagacccgaaggcggga 283
Query: 269 gctcgccgccttcttcggccagacgtcccacgaaaccaccggtggatgggcgactgctcc 328
|||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||
Sbjct: 284 gctcgccgccttcttcggacagacgtcccacgaaactaccggtggatggccaactgctcc 343
Query: 329 ggatggaccgtttgcctggggatactgccgggtgaaggaacagaaacagacggacccacc 388
|| ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 344 gggtggacagtttgcctggggatactgccgggtgaaggaacagaaccccacggacccacc 403
Query: 389 ctactatggacgaggacccatacagctaactcataagtacaactacaggctcgccgggca 448
|||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct: 404 ctactatggacgaggacccatacagctaactcatgagtacaactacaggcaagctgggca 463
Query: 449 agcgctgaacctgaacctggtgggcgacccggacctggtggcgagagaccccgtggt 505
||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct: 464 agcgctgaacctgaacctggtgggcaacccggacctggtgtcgagcgaccccgtggt 520
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 607 bits (306), Expect = e-172
Identities = 408/442 (92%)
Strand = Plus / Plus
Query: 352 actgccgggtgaaggaacagaaacagacggacccaccctactatggacgaggacccatac 411
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1 actgccgggtgaaggaacagaaccccacggacccaccctactatggacgaggacccatac 60
Query: 412 agctaactcataagtacaactacaggctcgccgggcaagcgctgaacctgaacctggtgg 471
||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 61 agctaactcatgagtacaactacaggcaagctgggcaagcgctgaacctgaacctggtgg 120
Query: 472 gcgacccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttct 531
|| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 121 gcaacccggacctggtgtcgagcgaccccgtggtggccttcaagacggccatctggttct 180
Query: 532 ggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgactggacgc 591
||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct: 181 ggatgacgccgcagtcgccgaagccgtcgtgccacgccgtcatgaccggcagctggacgc 240
Query: 592 cgtccgccaccgaccgcgccgccgggaggctccccggatatggcctcacctcgaacatca 651
| |||||| |||||||||||| |||||||||||||| |||||| | ||| | |||||||
Sbjct: 241 cctccgccgacgaccgcgccgcggggaggctccccgggtatggcgtgaccaccaacatca 300
Query: 652 tcaacggcgggctagagtgcggcaagggccagtccaccgacggcgccaaggaccgggtcg 711
||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 tcaacggcgggatggagtgcggcaagggccagtccaccgacgccgccaaggaccgggtcg 360
Query: 712 gctactacaagaggtactgcgatatgctccgggtggggtacggggacaacgtgccctgca 771
|||||||||||||||||| |||||||||||| ||| | |||||||||||| | ||||||
Sbjct: 361 gctactacaagaggtactccgatatgctccgagtgcgctacggggacaacatcgcctgca 420
Query: 772 aggaccagaagccttacggagg 793
||||||||||||||||||||||
Sbjct: 421 aggaccagaagccttacggagg 442
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 965 catctctggatgcatgataacgaa 988
|||||||||||||||||| |||||
Sbjct: 614 catctctggatgcatgattacgaa 637
Score = 40.1 bits (20), Expect = 0.39
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 819 tatggttgctgcaagcc-ttcacgtgtttttg 849
||||||||||||||||| ||||||||| ||||
Sbjct: 459 tatggttgctgcaagcctttcacgtgtgtttg 490
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 496 bits (250), Expect = e-138
Identities = 340/370 (91%)
Strand = Plus / Plus
Query: 424 agtacaactacaggctcgccgggcaagcgctgaacctgaacctggtgggcgacccggacc 483
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct: 237 agtacaactacaggcaagctgggcaagcgctgaacctgaacctggtgggcaacccggacc 296
Query: 484 tggtggcgagagaccccgtggtagccttcaagacggccatctggttctggatgacgccgc 543
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 297 tggtgtcgagcgaccccgtggtggccttcaagacggccatctggttctggatgacgccgc 356
Query: 544 agtcgcccaagccgtcgtgccacgccgtgatgaccggcgactggacgccgtccgccaccg 603
||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||| ||
Sbjct: 357 agtcgccgaagccgtcgtgccacgccgtcatgaccggcagctggacgccctccgccgacg 416
Query: 604 accgcgccgccgggaggctccccggatatggcctcacctcgaacatcatcaacggcgggc 663
|||||||||| |||||||||||||| |||||| | ||| | ||||||||||||||||||
Sbjct: 417 accgcgccgcggggaggctccccgggtatggcgtgaccaccaacatcatcaacggcggga 476
Query: 664 tagagtgcggcaagggccagtccaccgacggcgccaaggaccgggtcggctactacaaga 723
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 477 tggagtgcggcaagggccagtccaccgacgccgccaaggaccgggtcggctactacaaga 536
Query: 724 ggtactgcgatatgctccgggtggggtacggggacaacgtgccctgcaaggaccagaagc 783
|||||| |||||||||||| ||| | |||||||||||| | ||||||||||||||||||
Sbjct: 537 ggtactccgatatgctccgagtgcgctacggggacaacatcgcctgcaaggaccagaagc 596
Query: 784 cttacggagg 793
||||||||||
Sbjct: 597 cttacggagg 606
Score = 168 bits (85), Expect = 6e-040
Identities = 106/113 (93%)
Strand = Plus / Plus
Query: 309 ggtggatgggcgactgctccggatggaccgtttgcctggggatactgccgggtgaaggaa 368
||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 5 ggtggatggccaactgctccgggtggacagtttgcctggggatactgccgggtgaaggaa 64
Query: 369 cagaaacagacggacccaccctactatggacgaggacccatacagctaactca 421
||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cagaaccccacggacccaccctactatggacgaggacccatacagctaactca 117
Score = 40.1 bits (20), Expect = 0.39
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 819 tatggttgctgcaagcc-ttcacgtgtttttg 849
||||||||||||||||| ||||||||| ||||
Sbjct: 623 tatggttgctgcaagcctttcacgtgtgtttg 654
>gb|BE125178.1|BE125178 DG1_14_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 342
Score = 392 bits (198), Expect = e-107
Identities = 276/302 (91%)
Strand = Plus / Plus
Query: 29 gagggctttagcgatggtcctgttcatggctggcgccgcgctgctcgccggggctgccgg 88
||||| ||| |||| ||| ||| || |||| ||||||||||||||||| | ||| | |||
Sbjct: 37 gagggttttggcgacggtgctggtcttggcaggcgccgcgctgctcgcggcggccggcgg 96
Query: 89 cgccggcgcgcagcagggcgtgtggagcatcatcacccggcccatgttccagagcatgct 148
|||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 97 cgccagcgcgaagcatggcgtgtggagcatcatcacgcggcccatgttccagagcatgct 156
Query: 149 gagccaccgcggcgacagcgggtgccagggcgccttctacacctacgacgccttcatcga 208
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 157 gagccaccgcggcgacagcggttgccagggcgcgttctacacctacgacgcgttcatcga 216
Query: 209 ggccgccagcaagttccccggcttcggcaccaccggcgacgagcagacgcgcaggcggga 268
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 217 ggccgccagcaagttccccggcttcggcaccaccggcgacgaccagacccgaaggcggga 276
Query: 269 gctcgccgccttcttcggccagacgtcccacgaaaccaccggtggatgggcgactgctcc 328
|||||||||||||||||| ||||||| ||||||||| |||||||||||| | ||||||||
Sbjct: 277 gctcgccgccttcttcggacagacgttccacgaaactaccggtggatggccaactgctcc 336
Query: 329 gg 330
||
Sbjct: 337 gg 338
>gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431706, DNA
sequence
Length = 609
Score = 387 bits (195), Expect = e-105
Identities = 261/283 (92%)
Strand = Plus / Minus
Query: 29 gagggctttagcgatggtcctgttcatggctggcgccgcgctgctcgccggggctgccgg 88
||||| ||| |||| ||| ||| || |||| ||||||||||||||||| | ||| | |||
Sbjct: 602 gagggttttggcgacggtgctggtcttggcaggcgccgcgctgctcgcggcggccggcgg 543
Query: 89 cgccggcgcgcagcagggcgtgtggagcatcatcacccggcccatgttccagagcatgct 148
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 542 cgccagcgcgaagcagggcgtgtggagcatcatcacgcggcccatgttccagagcatgct 483
Query: 149 gagccaccgcggcgacagcgggtgccagggcgccttctacacctacgacgccttcatcga 208
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 482 gagccaccgcggcgacagcggttgccagggcgcgttctacacctacgacgcgttcatcga 423
Query: 209 ggccgccagcaagttccccggcttcggcaccaccggcgacgagcagacgcgcaggcggga 268
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 422 ggccgccagcaagttccccggcttcggcaccaccggcgacgaccagacccgaaggcggga 363
Query: 269 gctcgccgccttcttcggccagacgtcccacgaaaccaccggt 311
|||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 362 gctcgccgccttcttcggacagacgtcccacgaaactaccggt 320
Score = 168 bits (85), Expect = 6e-040
Identities = 106/113 (93%)
Strand = Plus / Minus
Query: 309 ggtggatgggcgactgctccggatggaccgtttgcctggggatactgccgggtgaaggaa 368
||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 200 ggtggatggccaactgctccgggtggacagtttgcctggggatactgccgggtgaaggaa 141
Query: 369 cagaaacagacggacccaccctactatggacgaggacccatacagctaactca 421
||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cagaaccccacggacccaccctactatggacgaggacccatacagctaactca 88
>gb|CW371155.1|CW371155 fsbb001f046h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046h18, DNA
sequence
Length = 415
Score = 301 bits (152), Expect = 7e-080
Identities = 203/220 (92%)
Strand = Plus / Minus
Query: 29 gagggctttagcgatggtcctgttcatggctggcgccgcgctgctcgccggggctgccgg 88
||||| ||| |||| ||| ||| || |||| ||||||||||||||||| | ||| | |||
Sbjct: 220 gagggttttggcgacggtgctggtcttggcaggcgccgcgctgctcgcggcggccggcgg 161
Query: 89 cgccggcgcgcagcagggcgtgtggagcatcatcacccggcccatgttccagagcatgct 148
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 160 cgccagcgcgaagcagggcgtgtggagcatcatcacgcggcccatgttccagagcatgct 101
Query: 149 gagccaccgcggcgacagcgggtgccagggcgccttctacacctacgacgccttcatcga 208
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 100 gagccaccgcggcgacagcggttgccagggcgcgttctacacctacgacgcgttcatcga 41
Query: 209 ggccgccagcaagttccccggcttcggcaccaccggcgac 248
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 ggccgccagcaagttccccggcttcggcaccaccggcgac 1
>gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198p08, DNA
sequence
Length = 772
Score = 244 bits (123), Expect = 1e-062
Identities = 171/187 (91%)
Strand = Plus / Plus
Query: 607 gcgccgccgggaggctccccggatatggcctcacctcgaacatcatcaacggcgggctag 666
||||||| |||||||||||||| |||||| | ||| | |||||||||||||||||| | |
Sbjct: 1 gcgccgcggggaggctccccgggtatggcgtgaccaccaacatcatcaacggcgggatgg 60
Query: 667 agtgcggcaagggccagtccaccgacggcgccaaggaccgggtcggctactacaagaggt 726
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 agtgcggcaagggccagtccaccgacgccgccaaggaccgggtcggctactacaagaggt 120
Query: 727 actgcgatatgctccgggtggggtacggggacaacgtgccctgcaaggaccagaagcctt 786
||| |||||||||||| ||| | |||||||||||| | |||||||||||||||||||||
Sbjct: 121 actccgatatgctccgagtgcgctacggggacaacatcgcctgcaaggaccagaagcctt 180
Query: 787 acggagg 793
|||||||
Sbjct: 181 acggagg 187
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 965 catctctggatgcatgataacgaa 988
|||||||||||||||||| |||||
Sbjct: 359 catctctggatgcatgattacgaa 382
Score = 40.1 bits (20), Expect = 0.39
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 819 tatggttgctgcaagcc-ttcacgtgtttttg 849
||||||||||||||||| ||||||||| ||||
Sbjct: 204 tatggttgctgcaagcctttcacgtgtgtttg 235
>gb|AW923259.1|AW923259 DG1_50_D06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 163 bits (82), Expect = 4e-038
Identities = 106/114 (92%)
Strand = Plus / Plus
Query: 680 ccagtccaccgacggcgccaaggaccgggtcggctactacaagaggtactgcgatatgct 739
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 301 ccagtccaccgacgccgccaaggaccgggtcggctactacaagaggtactccgatatgct 360
Query: 740 ccgggtggggtacggggacaacgtgccctgcaaggaccagaagccttacggagg 793
||| ||| | |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 361 ccgagtgcgctacggggacaacatcgcctgcaaggaccagaagccttacggagg 414
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 965 catctctggatgcatgataacgaa 988
|||||||||||||||||| |||||
Sbjct: 586 catctctggatgcatgattacgaa 609
Score = 40.1 bits (20), Expect = 0.39
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 819 tatggttgctgcaagcc-ttcacgtgtttttg 849
||||||||||||||||| ||||||||| ||||
Sbjct: 431 tatggttgctgcaagcctttcacgtgtgtttg 462
>gb|BE358893.1|BE358893 DG1_32_E07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 128
Score = 161 bits (81), Expect = 2e-037
Identities = 114/125 (91%)
Strand = Plus / Plus
Query: 669 tgcggcaagggccagtccaccgacggcgccaaggaccgggtcggctactacaagaggtac 728
||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct: 1 tgcggcaagggccagtccaccgacgccgccaaggaccgggtcggctagtacgagaggtac 60
Query: 729 tgcgatatgctccgggtggggtacggggacaacgtgccctgcaaggaccagaagccttac 788
| |||||||||||| ||| | |||||||||||| | | |||||||||||||||||||||
Sbjct: 61 tccgatatgctccgagtgcgctacggggacaacatcgcatgcaaggaccagaagccttac 120
Query: 789 ggagg 793
|||||
Sbjct: 121 ggagg 125
>gb|BE358790.1|BE358790 DG1_32_E07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 101
Score = 127 bits (64), Expect = 2e-027
Identities = 91/100 (91%)
Strand = Plus / Plus
Query: 312 ggatgggcgactgctccggatggaccgtttgcctggggatactgccgggtgaaggaacag 371
|||||| | |||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 2 ggatggccaactgctccgggtggacagtttgcctgtggatactgccgggtgaaggaacaa 61
Query: 372 aaacagacggacccaccctactatggacgaggacccatac 411
|| | ||||||||||||||||||||||||||||||||||
Sbjct: 62 aaccccacggacccaccctactatggacgaggacccatac 101
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Minus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 318 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 259
Query: 585 tggacgccgtc 595
|||||||||||
Sbjct: 258 tggacgccgtc 248
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Minus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 136 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 77
Query: 585 tggacgccgtc 595
|||||||||||
Sbjct: 76 tggacgccgtc 66
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 153 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 212
Query: 585 tggacgccgtc 595
|||||||||||
Sbjct: 213 tggacgccgtc 223
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 270 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 329
Query: 585 tggacgccgtc 595
|||||||||||
Sbjct: 330 tggacgccgtc 340
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 308 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 367
Query: 585 tggacgccgtc 595
|||||||||||
Sbjct: 368 tggacgccgtc 378
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 117 bits (59), Expect = 2e-024
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 117 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 176
Query: 585 tggacgccgtc 595
|||||||||||
Sbjct: 177 tggacgccgtc 187
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 107 bits (54), Expect = 2e-021
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct: 346 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgacgtcatgacggggcag 405
Query: 585 tggacgccgtccgccaccgaccgcgccgccgggaggctccccggatatggcctcacctcg 644
||||||||||| || | ||| |||||| |||||| | || || |||||| || | |
Sbjct: 406 tggacgccgtcggcagctgacatcgccgcggggaggttgccggggtatggcgtcgtcacc 465
Query: 645 aacatcatcaacggcgggctagagtgcggc 674
||||||||||||||||| || |||||||||
Sbjct: 466 aacatcatcaacggcggcctcgagtgcggc 495
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 107 bits (54), Expect = 2e-021
Identities = 126/150 (84%)
Strand = Plus / Minus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct: 365 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgacgtcatgacggggcag 306
Query: 585 tggacgccgtccgccaccgaccgcgccgccgggaggctccccggatatggcctcacctcg 644
||||||||||| || | ||| |||||| |||||| | || || |||||| || | |
Sbjct: 305 tggacgccgtcggcagctgacatcgccgcggggaggttgccggggtatggcgtcgtcacc 246
Query: 645 aacatcatcaacggcgggctagagtgcggc 674
||||||||||||||||| || |||||||||
Sbjct: 245 aacatcatcaacggcggcctcgagtgcggc 216
>gb|CW022214.1|CW022214 104_161_10431706_1_30006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431706, DNA
sequence
Length = 648
Score = 105 bits (53), Expect = 8e-021
Identities = 95/109 (87%)
Strand = Plus / Plus
Query: 29 gagggctttagcgatggtcctgttcatggctggcgccgcgctgctcgccggggctgccgg 88
||||| ||| |||| ||| ||| || |||| ||||||||||||||||| | ||| | |||
Sbjct: 540 gagggttttggcgacggtgctggtcttggcaggcgccgcgctgctcgcggcggccggcgg 599
Query: 89 cgccggcgcgcagcagggcgtgtggagcatcatcacccggcccatgttc 137
|||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 cgccagcgcgaagcagggcgtgtggagcatcatcacgcggcccatgttc 648
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 97.6 bits (49), Expect = 2e-018
Identities = 133/161 (82%)
Strand = Plus / Minus
Query: 514 agacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtga 573
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 313 agaccgccgtctggttctggatgacgccgcagccgcccaagccgtcgtgccacgccgtcg 254
Query: 574 tgaccggcgactggacgccgtccgccaccgaccgcgccgccgggaggctccccggatatg 633
| || || | ||| ||||||| | ||||| ||||||||| ||||| || || ||||
Sbjct: 253 tcacggggcagtgggcgccgtcgcctgccgacaccgccgccggcaggctgccggggtatg 194
Query: 634 gcctcacctcgaacatcatcaacggcgggctagagtgcggc 674
|| || | | ||||||||||||||||| || |||||||||
Sbjct: 193 gcgtcgtcaccaacatcatcaacggcggcctcgagtgcggc 153
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 97.6 bits (49), Expect = 2e-018
Identities = 133/161 (82%)
Strand = Plus / Minus
Query: 514 agacggccatctggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtga 573
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 agaccgccgtctggttctggatgacgccgcagccgcccaagccgtcgtgccacgccgtcg 263
Query: 574 tgaccggcgactggacgccgtccgccaccgaccgcgccgccgggaggctccccggatatg 633
| || || | ||| ||||||| | ||||| ||||||||| ||||| || || ||||
Sbjct: 262 tcacggggcagtgggcgccgtcgcctgccgacaccgccgccggcaggctgccggggtatg 203
Query: 634 gcctcacctcgaacatcatcaacggcgggctagagtgcggc 674
|| || | | ||||||||||||||||| || |||||||||
Sbjct: 202 gcgtcgtcaccaacatcatcaacggcggcctcgagtgcggc 162
Score = 40.1 bits (20), Expect = 0.39
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttccccggcttcggcaccac 241
||||||||||||| |||||| ||| ||| |||| | |||||| ||||||||||||||
Sbjct: 711 cttctacacctactcggccttcgtcgcggcagccaactcgttcccgggcttcggcaccac 652
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 93.7 bits (47), Expect = 3e-017
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacgccgtgatgaccggcgac 584
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 130 tggttttggataacgccgcagtcgcccaagccgtcgtgccacgccgtcatgaccggccag 189
Query: 585 tggacgccgtc 595
|| ||||||||
Sbjct: 190 tgtacgccgtc 200
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||
Sbjct: 153 acccggacctggtggcgaccgaccccgtggtatccttcaagacggcgctgtggttctgga 212
Query: 535 tgacg 539
|||||
Sbjct: 213 tgacg 217
Score = 42.1 bits (21), Expect = 0.100
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 645 aacatcatcaacggcgggctagagtgcgg 673
|||||||||||||||||| | ||||||||
Sbjct: 326 aacatcatcaacggcgggatcgagtgcgg 354
>gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||
Sbjct: 241 acccggacctggtggcgaccgaccccgtggtatccttcaagacggcgctgtggttctgga 300
Query: 535 tgacg 539
|||||
Sbjct: 301 tgacg 305
>gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030o20, DNA
sequence
Length = 627
Score = 73.8 bits (37), Expect = 3e-011
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 267 gagctcgccgccttcttcggccagacgtcccacgaaaccaccggt 311
|||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 260 gagctcgccgccttcttcggccagacctcccacgagaccaccggt 216
Score = 42.1 bits (21), Expect = 0.100
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 183 ttctacacctacgacgccttcatcg 207
|||||||||||||||||||| ||||
Sbjct: 344 ttctacacctacgacgcctttatcg 320
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 495 gaccccgtggtagccttcaagacggccatctggttctggatgacgccgcagtcgcccaag 554
||||||| ||| || ||||||||||| | |||||||||||||| ||| ||||||||||
Sbjct: 412 gaccccgaggtggcgttcaagacggcgctgtggttctggatgaccccgaggtcgcccaag 471
Query: 555 ccgtcgtgccacg 567
|||||||||||||
Sbjct: 472 ccgtcgtgccacg 484
>gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 5', mRNA sequence
Length = 723
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 495 gaccccgtggtagccttcaagacggccatctggttctggatgacgccgcagtcgcccaag 554
||||||| ||| || ||||||||||| | |||||||||||||| ||| ||||||||||
Sbjct: 603 gaccccgaggtggcgttcaagacggcgctgtggttctggatgaccccgaggtcgcccaag 662
Query: 555 ccgtcgtgccacg 567
|||||||||||||
Sbjct: 663 ccgtcgtgccacg 675
>gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230799, DNA
sequence
Length = 583
Score = 65.9 bits (33), Expect = 7e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 495 gaccccgtggtagccttcaagacggccatctggttctggatgacgccgcagtcgcccaag 554
||||||| ||| || ||||||||||| | |||||||||||||| ||| ||||||||||
Sbjct: 390 gaccccgaggtggcgttcaagacggcgctgtggttctggatgaccccgaggtcgcccaag 331
Query: 555 ccgtcgtgccacg 567
|||||||| ||||
Sbjct: 330 ccgtcgtgtcacg 318
>gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 587
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttccccggcttcggcaccac 241
||||||||||||| ||||||||||| ||| |||| | |||||| ||||||||||||||
Sbjct: 337 cttctacacctactccgccttcatcgcggcggccaacgcgttcccgggcttcggcaccac 396
Query: 242 cggcg 246
||||
Sbjct: 397 gggcg 401
>gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttccccggcttcggcaccac 241
||||||||||||| ||||||||||| ||| |||| | |||||| ||||||||||||||
Sbjct: 418 cttctacacctactccgccttcatcgcggcggccaacgcgttcccgggcttcggcaccac 477
Query: 242 cggcg 246
||||
Sbjct: 478 gggcg 482
>gb|AI723861.1|AI723861 RHIZ1_28_D10.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 252
Score = 56.0 bits (28), Expect = 7e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 766 cctgcaaggaccagaagccttacggagg 793
||||||||||||||||||||||||||||
Sbjct: 10 cctgcaaggaccagaagccttacggagg 37
Score = 40.1 bits (20), Expect = 0.39
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 819 tatggttgctgcaagcc-ttcacgtgtttttg 849
||||||||||||||||| ||||||||| ||||
Sbjct: 54 tatggttgctgcaagcctttcacgtgtgtttg 85
>gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805558, DNA
sequence
Length = 680
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 114 tggttctggatgacgccgcgccggcccaagccgtcgtgccacg 156
>gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523499, DNA
sequence
Length = 537
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||| |||||||| ||||||||| | || ||||||||||| ||||||||||||
Sbjct: 407 acccggacatggtggcgcaggaccccgtgatcgcgttcaagacggcgctctggttctgga 348
Query: 535 tga 537
|||
Sbjct: 347 tga 345
>gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107443, DNA
sequence
Length = 329
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||| |||||||| ||||||||| | || ||||||||||| ||||||||||||
Sbjct: 149 acccggacatggtggcgcaggaccccgtgatcgcgttcaagacggcgctctggttctgga 90
Query: 535 tga 537
|||
Sbjct: 89 tga 87
>gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404861, DNA
sequence
Length = 627
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||| |||||||| ||||||||| | || ||||||||||| ||||||||||||
Sbjct: 260 acccggacatggtggcgcaggaccccgtgatcgcgttcaagacggcgctctggttctgga 201
Query: 535 tga 537
|||
Sbjct: 200 tga 198
>gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 746
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 476 tggttctggatgacgccgcgccggcccaagccgtcgtgccacg 434
>gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182a11, DNA
sequence
Length = 633
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||| |||||||| ||||||||| | || ||||||||||| ||||||||||||
Sbjct: 471 acccggacatggtggcgcaggaccccgtgatcgcgttcaagacggcgctctggttctgga 412
Query: 535 tga 537
|||
Sbjct: 411 tga 409
>gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283n22, DNA
sequence
Length = 617
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||| |||||||| ||||||||| | || ||||||||||| ||||||||||||
Sbjct: 70 acccggacatggtggcgcaggaccccgtgatcgcgttcaagacggcgctctggttctgga 11
Query: 535 tga 537
|||
Sbjct: 10 tga 8
>gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 3', mRNA sequence
Length = 635
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 94 tggttctggatgacgccgcgccggcccaagccgtcgtgccacg 136
>gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 3', mRNA sequence
Length = 599
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 249 tggttctggatgacgccgcgccggcccaagccgtcgtgccacg 291
>gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 5', mRNA sequence
Length = 805
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 712 tggttctggatgacgccgcgccggcccaagccgtcgtgccacg 754
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttcccc 227
|||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct: 324 cttctacacctacgcctccttcatccaggccgccaggacgttcccc 369
>gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 718
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttcccc 227
|||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct: 239 cttctacacctacgcctccttcatccaggccgccaggacgttcccc 284
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 627 tggttctggatgacgccgcgccggcccaagccgtcgtggcacg 669
>gb|CF480059.1|CF480059 POL1_63_B05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_63_B05_A002 5', mRNA sequence
Length = 590
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttcccc 227
|||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct: 297 cttctacacctacgcctccttcatccaggccgccaggacgttcccc 342
>gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 5', mRNA sequence
Length = 683
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttcccc 227
|||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct: 341 cttctacacctacgcctccttcatccaggccgccaggacgttcccc 386
>gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 5', mRNA sequence
Length = 740
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttcccc 227
|||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct: 314 cttctacacctacgcctccttcatccaggccgccaggacgttcccc 359
Score = 46.1 bits (23), Expect = 0.006
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 525 tggttctggatgacgccgcagtcgcccaagccgtcgtgc 563
||||||||||||||||||| ||||||||||||||||
Sbjct: 702 tggttctggatgacgccgcgccggcccaagccgtcgtgc 740
>gb|CL186365.1|CL186365 104_401_10900160_116_32413_030 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900160, DNA
sequence
Length = 695
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 182 cttctacacctacgacgccttcatcgaggccgccagcaagttccccggcttcggcac 238
|||||||||||||| ||||||||||| ||| |||| | ||||| |||||||||||
Sbjct: 586 cttctacacctacgccgccttcatcgcggcggccaactccttcccgggcttcggcac 642
>gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 642
Score = 50.1 bits (25), Expect = 4e-004
Identities = 97/121 (80%)
Strand = Plus / Minus
Query: 554 gccgtcgtgccacgccgtgatgaccggcgactggacgccgtccgccaccgaccgcgccgc 613
|||||||||||||| ||| ||||| || | ||||||||||| || | ||| ||||||
Sbjct: 642 gccgtcgtgccacgacgtcatgacggggcagtggacgccgtcggcagctgacatcgccgc 583
Query: 614 cgggaggctccccggatatggcctcacctcgaacatcatcaacggcgggctagagtgcgg 673
|||||| | || || |||||| || | | ||||||||||||||||| || ||||||||
Sbjct: 582 ggggaggttgccggggtatggcgtcgtcaccaacatcatcaacggcggcctcgagtgcgg 523
Query: 674 c 674
|
Sbjct: 522 c 522
>gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 3', mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 528 ttctggatgacgccgcagtcgcccaagccgtcgtgccacg 567
|||||||||||||||| ||||||||||||||||||||
Sbjct: 249 ttctggatgacgccgcgccggcccaagccgtcgtgccacg 288
>gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_9_D11_A002 3', mRNA sequence
Length = 812
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 475 acccggacctggtggcgagagaccccgtggtagccttcaagacggccatctggttctgga 534
|||||||| ||||||| |||| ||||||| || ||||||||||| ||||||||||||
Sbjct: 391 acccggacagggtggcgcaagacgccgtggtcgcgttcaagacggcgctctggttctgga 450
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 319,475
Number of Sequences: 832831
Number of extensions: 319475
Number of successful extensions: 96061
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95838
Number of HSP's gapped (non-prelim): 212
length of query: 1027
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1007
effective length of database: 474,703,049
effective search space: 478025970343
effective search space used: 478025970343
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)