BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG241110.1|BG241110 OV1_38_C11.b1_A002 Ovary 1 (OV1) Sor... 957 0.0
gb|AW565296.1|AW565296 LG1_342_F10.g1_A002 Light Grown 1 (L... 827 0.0
gb|CF758307.1|CF758307 DSAF1_30_B03.g1_A011 Drought-stresse... 726 0.0
gb|CN132813.1|CN132813 OX1_8_H08.b1_A002 Oxidatively-stress... 597 e-168
gb|CF484462.1|CF484462 POL1_25_A12.g1_A002 Pollen Sorghum b... 587 e-165
gb|CD427763.1|CD427763 ETH1_34_C07.b1_A002 Ethylene-treated... 583 e-164
gb|CF432520.1|CF432520 NIT1_17_A07.b1_A002 Nitrogen-deficie... 583 e-164
gb|BG240793.1|BG240793 OV1_38_C11.g1_A002 Ovary 1 (OV1) Sor... 581 e-164
gb|CF484383.1|CF484383 POL1_25_A12.b1_A002 Pollen Sorghum b... 575 e-162
gb|CF432568.1|CF432568 NIT1_17_A07.g1_A002 Nitrogen-deficie... 507 e-142
gb|CF758930.1|CF758930 DSAF1_38_C05.g1_A011 Drought-stresse... 492 e-137
gb|BM326140.1|BM326140 PIC1_66_C01.b1_A002 Pathogen-infecte... 438 e-121
gb|AW283936.1|AW283936 LG1_282_F11.g1_A002 Light Grown 1 (L... 404 e-111
gb|BI099355.1|BI099355 IP1_41_A09.g1_A002 Immature pannicle... 389 e-106
gb|BI075335.1|BI075335 IP1_19_C08.b1_A002 Immature pannicle... 335 6e-090
gb|BI075138.1|BI075138 IP1_19_C08.g1_A002 Immature pannicle... 105 1e-020
gb|BM331444.1|BM331444 PIC1_66_C01.g1_A002 Pathogen-infecte... 98 2e-018
gb|AW564120.1|AW564120 LG1_282_F11.b1_A002 Light Grown 1 (L... 64 3e-008
>gb|BG241110.1|BG241110 OV1_38_C11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 595
Score = 957 bits (483), Expect = 0.0
Identities = 567/595 (95%)
Strand = Plus / Minus
Query: 463 ggtactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagt 522
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 595 ggtactcaactttgaactggaaaactccataaacatcaggaactttgaaggatgttgaat 536
Query: 523 ataaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaact 582
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 535 ataaacccttgttgtcagtcgacatagttttcagaacataaggactcatcataaaaaatt 476
Query: 583 ggagttgcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatct 642
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 475 gaagttgcacatcatcagcaacatatggcttccagcttgttccggaccattcatagatct 416
Query: 643 caacagagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaa 702
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 415 caacagagtattccaggtcatcattaatgcggtacatgcctggttcattggcctccccaa 356
Query: 703 ccttgtggtgcttaacattaacagccttaaggtgccccctctcatggaagacccatttgc 762
||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct: 355 ccttgtgatgcttaacattaacagcctttagatgccccctctcatggaaaacccatttgc 296
Query: 763 ttgtctctgtcacaaattgctcatttccagctctctcgtatctcgttttgctaccagcct 822
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 295 ttgtctcggtcacaaattgctcatttccagccctctcgtatctcgttttgctaccagcct 236
Query: 823 tttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccagatagcagca 882
|||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct: 235 tttgaacaccagacttcaggaaccggttgctaaacaggtcgagtgatccagatatcagca 176
Query: 883 cccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgacccagtaagcg 942
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 175 cccgagcattatttcttgcctgcataaccgaaaccaatgatatagctgacccagtgagcg 116
Query: 943 atggaggcaacgataacttagtctttgggttagctgagtatgctgatggagaggcagata 1002
||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115 atggaggagatgacaacttagtctttgggttagctgaatatgctgatggagaggcagata 56
Query: 1003 ggactttcagaaccaaactgtttgatggattagccgtgtgtccaattccacgaaa 1057
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 55 ggactttcagaaccaaactgtttgatggattagccgtgtgtccaattcctcgaaa 1
>gb|AW565296.1|AW565296 LG1_342_F10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 710
Score = 827 bits (417), Expect = 0.0
Identities = 506/535 (94%), Gaps = 3/535 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 536 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 480
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 479 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 420
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 419 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 360
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 359 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 300
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 240
Query: 535 tgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacat 594
||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 239 tgtcagtcgacatagttttcagaacataaggactcatcataaaaaattgaagttgcacat 180
Query: 595 catcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtatt 654
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 179 catcagcaacatatggcttccagcttgttccggaccattcatagatctcaacagagtatt 120
Query: 655 ccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgct 714
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 119 ccaggtcatcattaatgcggtacatgcctggttcattggcctccccaaccttgtgatgct 60
Query: 715 taacattaacagccttaaggtgccccctctcatggaagacccatttgcttgtctc 769
|||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 59 taacattaacagcctttagatgccccctctcatggaaaacccatttgcttgtctc 5
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 674 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 619
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 618 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 561
Query: 231 cttggc 236
||||||
Sbjct: 560 cttggc 555
>gb|CF758307.1|CF758307 DSAF1_30_B03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_B03_A011 3', mRNA sequence
Length = 692
Score = 726 bits (366), Expect = 0.0
Identities = 446/472 (94%), Gaps = 3/472 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 469 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 413
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct: 412 atttgtggtacaggtacacaagcgagaatataaagaaagcacccattgttgaaaatgagg 353
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 352 cggtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 293
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 292 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 233
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 232 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 173
Query: 535 tgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacat 594
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 172 tgtcagtcgacatagttttcagaacataaggactcatcataaaaaactgaagttgcacat 113
Query: 595 catcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtatt 654
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 112 catcagcaacatatggcttccagcttgttccggaccattcatatatctcaacagagtatt 53
Query: 655 ccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaacctt 706
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ccaggtcatcattaatgcggtacatgcctggttcattggtctccccaacctt 1
Score = 121 bits (61), Expect = 2e-025
Identities = 115/130 (88%), Gaps = 6/130 (4%)
Strand = Plus / Minus
Query: 107 gtggggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtc 166
|||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||
Sbjct: 611 gtggggcagatcgaacatccta---gcacgagtaaatt-ctcatgagtgcggtcacggtc 556
Query: 167 gtctaattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggt 226
||| ||| || |||||||||| |||||||| ||||| |||||||||||||||| ||||
Sbjct: 555 gtcaaatgttatctaagttggc--actacaaaaatatggttccataaaattgcactgggt 498
Query: 227 aacacttggc 236
||||||||||
Sbjct: 497 aacacttggc 488
Score = 60.0 bits (30), Expect = 5e-007
Identities = 61/70 (87%), Gaps = 6/70 (8%)
Strand = Plus / Minus
Query: 16 aaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgttttcacaagtg 75
||||||||||||||| |||| ||||||||||| | ||||||| |||||||||||||
Sbjct: 691 aaatcactacatgct----catcatttcaatgctata--ctgtaaaagttttcacaagtg 638
Query: 76 ctgatcagaa 85
||||||||||
Sbjct: 637 ctgatcagaa 628
>gb|CN132813.1|CN132813 OX1_8_H08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_H08_A002 3', mRNA sequence
Length = 624
Score = 597 bits (301), Expect = e-168
Identities = 369/391 (94%), Gaps = 3/391 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 391 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 335
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 334 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 275
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 274 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 215
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 214 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 155
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 154 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 95
Query: 535 tgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacat 594
||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 94 tgtcagtcgacatagttttcagaacataaggactcatcataaaaaattgaagttgcacat 35
Query: 595 catcagcaacatatggcttccagcttgttcc 625
|||||||||||||||||||||||||||||||
Sbjct: 34 catcagcaacatatggcttccagcttgttcc 4
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 529 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 474
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 473 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 416
Query: 231 cttggc 236
||||||
Sbjct: 415 cttggc 410
Score = 63.9 bits (32), Expect = 3e-008
Identities = 69/80 (86%), Gaps = 6/80 (7%)
Strand = Plus / Minus
Query: 6 agtagtttcaaaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgtt 65
|||| |||||||||||||||||||| |||| ||||||||||| | ||||| |||||
Sbjct: 622 agtactttcaaaatcactacatgct----catcatttcaatgctata--ctgtagacgtt 569
Query: 66 ttcacaagtgctgatcagaa 85
|||||||||| |||||||||
Sbjct: 568 ttcacaagtgttgatcagaa 549
>gb|CF484462.1|CF484462 POL1_25_A12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_A12_A002 5', mRNA sequence
Length = 466
Score = 587 bits (296), Expect = e-165
Identities = 383/415 (92%)
Strand = Plus / Minus
Query: 815 accagccttttgaacaccagacttcaggaaccggttgctaaaaagatcaagtgatccaga 874
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 466 accagccttttgaacaccagacttcaggaaccggttgctaaacaggtcgagtgatccaga 407
Query: 875 tagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgatatagctgaccc 934
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 406 tatcagcacccgagcactatttcttgcctgcataaccgaaaccaatgatatagctgaccc 347
Query: 935 agtaagcgatggaggcaacgataacttagtctttgggttagctgagtatgctgatggaga 994
||| ||||||||||| | || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 346 agtgagcgatggaggagatgacaacttagtctttgggttagctgaatatgctgatggaga 287
Query: 995 ggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattccacg 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 286 ggcagataggactttcagaaccaaactgtttgatggattagccgtgtgtccaattcctcg 227
Query: 1055 aaataatacaggagcctcaatctttttagaccccagtatgacatctgactgaataagatc 1114
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 226 aaacaatacaggagcctcaatctttttagaccccagtatcacatctgactggataagatc 167
Query: 1115 atcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatannnnntgtggtc 1174
||||||| |||||||||||||||| |||||||||||| | ||||||| |||||||
Sbjct: 166 atcaccagcaatcaaggtgtgatcaccttcaacatccgtgacggcatagttaatgtggtc 107
Query: 1175 aataaccattnnnnctggatcctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 106 aataaccattgcctctggatcctcatcaaaatcaaccccgcactctgttgcaatg 52
>gb|CD427763.1|CD427763 ETH1_34_C07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_C07_A002 3', mRNA sequence
Length = 610
Score = 583 bits (294), Expect = e-164
Identities = 374/400 (93%), Gaps = 3/400 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||| ||
Sbjct: 397 gccacagatctaggtcgcatcagc---ctccaaaaacttgtgtgctcccatgagtccctt 341
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 340 atttgtggtacaggtacccaagcgagaatatgaagaaagcacccattgttgaaaatgagg 281
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 280 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 221
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 220 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 161
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 160 tgaactgggaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 101
Query: 535 tgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacat 594
||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 100 tgtcagtcgacatagttttcagaacataaggactcatcataaaaaattgaagttgcacat 41
Query: 595 catcagcaacatatggcttccagcttgttccagaccattc 634
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 40 catcagcaacatatggcttccagcttgttccggaccattc 1
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 535 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 480
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 479 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 422
Query: 231 cttggc 236
||||||
Sbjct: 421 cttggc 416
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/52 (88%), Gaps = 2/52 (3%)
Strand = Plus / Minus
Query: 34 tcatcctttcaatgctacagactgtaaacgttttcacaagtgctgatcagaa 85
||||| ||||||||||| | ||| ||||||||||||||||| |||||||||
Sbjct: 604 tcatcatttcaatgctata--ctggaaacgttttcacaagtgttgatcagaa 555
>gb|CF432520.1|CF432520 NIT1_17_A07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_17_A07_A002 3', mRNA sequence
Length = 611
Score = 583 bits (294), Expect = e-164
Identities = 369/392 (94%), Gaps = 4/392 (1%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 393 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 337
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 336 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 277
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 276 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 217
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 216 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 157
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaaccc-ttg 533
|||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||
Sbjct: 156 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccnttg 97
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 96 ttgtcagtcgacatagttttcagaacataaggactcatcataaaaaattgaagttgcaca 37
Query: 594 tcatcagcaacatatggcttccagcttgttcc 625
||||||||||||||||||||||||||||||||
Sbjct: 36 tcatcagcaacatatggcttccagcttgttcc 5
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 531 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 476
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 475 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 418
Query: 231 cttggc 236
||||||
Sbjct: 417 cttggc 412
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/52 (88%), Gaps = 2/52 (3%)
Strand = Plus / Minus
Query: 34 tcatcctttcaatgctacagactgtaaacgttttcacaagtgctgatcagaa 85
||||| ||||||||||| | ||||| ||||||||||||||| |||||||||
Sbjct: 600 tcatcatttcaatgctata--ctgtagacgttttcacaagtgttgatcagaa 551
>gb|BG240793.1|BG240793 OV1_38_C11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 581 bits (293), Expect = e-164
Identities = 361/383 (94%), Gaps = 3/383 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 380 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 324
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 323 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 264
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 204
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 203 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 144
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 84
Query: 535 tgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacat 594
||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 83 tgtcagtcgacatagttttcagaacataaggactcatcataaaaaattgaagttgcacat 24
Query: 595 catcagcaacatatggcttccag 617
|||||||||||||||||||||||
Sbjct: 23 catcagcaacatatggcttccag 1
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 518 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 463
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 462 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 405
Query: 231 cttggc 236
||||||
Sbjct: 404 cttggc 399
>gb|CF484383.1|CF484383 POL1_25_A12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_A12_A002 3', mRNA sequence
Length = 619
Score = 575 bits (290), Expect = e-162
Identities = 373/400 (93%), Gaps = 3/400 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||| ||
Sbjct: 397 gccacagatctaggtcgcatcagc---ctccaaaaacttgtgtgctcccatgagtccctt 341
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 340 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 281
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 280 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 221
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 220 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 161
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 160 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 101
Query: 535 tgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacat 594
||||| || |||||||||||| ||||||||||||| |||| ||||| || ||||||||||
Sbjct: 100 tgtcagtccacatagttttcaaaacataaggactcctcataaaaaattgaagttgcacat 41
Query: 595 catcagcaacatatggcttccagcttgttccagaccattc 634
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 40 catcagcaacatatggcttccagcttgttccggaccattc 1
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 535 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 480
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 479 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 422
Query: 231 cttggc 236
||||||
Sbjct: 421 cttggc 416
Score = 60.0 bits (30), Expect = 5e-007
Identities = 61/70 (87%), Gaps = 6/70 (8%)
Strand = Plus / Minus
Query: 16 aaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgttttcacaagtg 75
||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||
Sbjct: 618 aaatcactacatgct----catcatttcaatgctata--ctgtaaacgttttcacaagtg 565
Query: 76 ctgatcagaa 85
|||||||||
Sbjct: 564 ttgatcagaa 555
>gb|CF432568.1|CF432568 NIT1_17_A07.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_17_A07_A002 5', mRNA sequence
Length = 683
Score = 507 bits (256), Expect = e-142
Identities = 331/359 (92%)
Strand = Plus / Minus
Query: 864 agtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgat 923
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 679 agtgatccagatatcagcacccgagcattatttcttgcctgcataaccgaaaccaatgat 620
Query: 924 atagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtat 983
|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| |||
Sbjct: 619 atagctgacccagtgagcgatggaggagatgacaacttagtctttgggttagctgaatat 560
Query: 984 gctgatggagaggcagataggactttcagaaccaaactgtttgatggattagccgtgtgt 1043
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 gctgatggagaggcagataggactttcagaaccaaaccgtttgatggattagccgtgtgt 500
Query: 1044 ccaattccacgaaataatacaggagcctcaatctttttagaccccagtatgacatctgac 1103
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 ccaattcctcgaaacaatacaggagcctcaatctttttagaccccagtatcacatctgac 440
Query: 1104 tgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacatccatagcggcatan 1163
|| ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||
Sbjct: 439 tggataagatcatcaccagcaatcaaggtgtgatcaccttcaacatccgtgacggcatag 380
Query: 1164 nnnntgtggtcaataaccattnnnnctggatcctcatcaaaatcaaccccacactctgt 1222
||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 379 ttaatgtggtcaataaccattgcctctggatcctcatcaaaatcaaccccgcactctgt 321
>gb|CF758930.1|CF758930 DSAF1_38_C05.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_C05_A011 3', mRNA sequence
Length = 554
Score = 492 bits (248), Expect = e-137
Identities = 313/334 (93%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 331 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 275
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct: 274 atttgtggtacaggtacacaagcgagaatataaagaaagcacccattgttgaaaatgagg 215
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 214 cggtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 155
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 154 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 95
Query: 475 tgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgt 534
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 94 tgaactggaaaactccataaacatcaggaactttgaaggatgttgaatataaacccttgt 35
Query: 535 tgtcattcgacatagttttcagaacataaggact 568
||||| ||||||||||||||||||||||||||||
Sbjct: 34 tgtcagtcgacatagttttcagaacataaggact 1
Score = 121 bits (61), Expect = 2e-025
Identities = 115/130 (88%), Gaps = 6/130 (4%)
Strand = Plus / Minus
Query: 107 gtggggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtc 166
|||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||
Sbjct: 473 gtggggcagatcgaacatccta---gcacgagtaaatt-ctcatgagtgcggtcacggtc 418
Query: 167 gtctaattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggt 226
||| ||| || |||||||||| |||||||| ||||| |||||||||||||||| ||||
Sbjct: 417 gtcaaatgttatctaagttggc--actacaaaaatatggttccataaaattgcactgggt 360
Query: 227 aacacttggc 236
||||||||||
Sbjct: 359 aacacttggc 350
Score = 60.0 bits (30), Expect = 5e-007
Identities = 61/70 (87%), Gaps = 6/70 (8%)
Strand = Plus / Minus
Query: 16 aaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgttttcacaagtg 75
||||||||||||||| |||| ||||||||||| | ||||||| |||||||||||||
Sbjct: 553 aaatcactacatgct----catcatttcaatgctata--ctgtaaaagttttcacaagtg 500
Query: 76 ctgatcagaa 85
||||||||||
Sbjct: 499 ctgatcagaa 490
>gb|BM326140.1|BM326140 PIC1_66_C01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 438 bits (221), Expect = e-121
Identities = 293/320 (91%)
Strand = Plus / Minus
Query: 910 ccgaaaccagtgatatagctgacccagtaagcgatggaggcaacgataacttagtctttg 969
||||||||| |||||||||||||||||| ||||||||||| | || |||||||||||||
Sbjct: 494 ccgaaaccaatgatatagctgacccagtgagcgatggaggagatgacaacttagtctttg 435
Query: 970 ggttagctgagtatgctgatggagaggcagataggactttcagaaccaaactgtttgatg 1029
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggttagctgaatatgctgatggagaggcagataggactttcagaaccaaactgtttgatg 375
Query: 1030 gattagccgtgtgtccaattccacgaaataatacaggagcctcaatctttttagacccca 1089
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 374 gattagccgtgtgtccaattcctcgaaacaatacaggagcctcaatctttttagacccca 315
Query: 1090 gtatgacatctgactgaataagatcatcaccaacaatcaaggtgtgatcgccttcaacat 1149
|||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 314 gtatcacatctgactggataagatcatcaccagcaatcaaggtgtgatcaccttcaacat 255
Query: 1150 ccatagcggcatannnnntgtggtcaataaccattnnnnctggatcctcatcaaaatcaa 1209
|| | ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 254 ccgtgacggcatagttaatgtggtcaataaccattgcctctggatcctcatcaaaatcaa 195
Query: 1210 ccccacactctgtcgcaatg 1229
|||| |||||||| ||||||
Sbjct: 194 ccccgcactctgttgcaatg 175
>gb|AW283936.1|AW283936 LG1_282_F11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 404 bits (204), Expect = e-111
Identities = 257/274 (93%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 271 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 215
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 214 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 155
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 154 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 95
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 94 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 35
Query: 475 tgaactggaaaactccgtagacatcaggaacttt 508
|||||||||||||||| || ||||||||||||||
Sbjct: 34 tgaactggaaaactccataaacatcaggaacttt 1
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 409 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 354
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 353 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 296
Query: 231 cttggc 236
||||||
Sbjct: 295 cttggc 290
Score = 56.0 bits (28), Expect = 8e-006
Identities = 62/72 (86%), Gaps = 6/72 (8%)
Strand = Plus / Minus
Query: 14 caaaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgttttcacaag 73
||||||||||||||||| |||| ||||||||||| | ||||| |||||||||||||
Sbjct: 494 caaaatcactacatgct----catcatttcaatgctata--ctgtagacgttttcacaag 441
Query: 74 tgctgatcagaa 85
|| |||||||||
Sbjct: 440 tgttgatcagaa 429
>gb|BI099355.1|BI099355 IP1_41_A09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 529
Score = 389 bits (196), Expect = e-106
Identities = 249/266 (93%), Gaps = 3/266 (1%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 265 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 209
Query: 295 atttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgagg 354
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 208 atttgtggtacaggtacacaagcgagaatatgaagaaagcacccattgttgaaaatgagg 149
Query: 355 cagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaagggc 414
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 148 cagtgtagtatgggtaagctgatgttatgaatctctcatactcgttatgcctgtaagggc 89
Query: 415 gcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactt 474
| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 88 gtactggaatctgctttgtaaaagacagaccagtatatcccaatctttggtactcaactt 29
Query: 475 tgaactggaaaactccgtagacatca 500
|||||||||||||||| || ||||||
Sbjct: 28 tgaactggaaaactccataaacatca 3
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 403 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 348
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 347 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 290
Query: 231 cttggc 236
||||||
Sbjct: 289 cttggc 284
Score = 63.9 bits (32), Expect = 3e-008
Identities = 69/80 (86%), Gaps = 6/80 (7%)
Strand = Plus / Minus
Query: 6 agtagtttcaaaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgtt 65
|||| |||||||||||||||||||| |||| ||||||||||| | ||||| |||||
Sbjct: 496 agtactttcaaaatcactacatgct----catcatttcaatgctata--ctgtagacgtt 443
Query: 66 ttcacaagtgctgatcagaa 85
|||||||||| |||||||||
Sbjct: 442 ttcacaagtgttgatcagaa 423
>gb|BI075335.1|BI075335 IP1_19_C08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 335 bits (169), Expect = 6e-090
Identities = 202/213 (94%)
Strand = Plus / Minus
Query: 804 ctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaaagatca 863
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 239 ctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaacaggtcg 180
Query: 864 agtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaaccagtgat 923
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 179 agtgatccagatatcagcacccgagcattatttcttgcctgcataaccgaaaccaatgat 120
Query: 924 atagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagctgagtat 983
|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| |||
Sbjct: 119 atagctgacccagtgagcgatggaggagatgacaacttagtctttgggttagctgaatat 60
Query: 984 gctgatggagaggcagataggactttcagaacc 1016
|||||||||||||||||||||||||||||||||
Sbjct: 59 gctgatggagaggcagataggactttcagaacc 27
>gb|BI075138.1|BI075138 IP1_19_C08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 502
Score = 105 bits (53), Expect = 1e-020
Identities = 110/126 (87%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||
Sbjct: 213 ggcagatcgaacatccta---gcacaagtaaatt-ctcatgagtgcggtcacggtcgtca 158
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 157 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 100
Query: 231 cttggc 236
||||||
Sbjct: 99 cttggc 94
Score = 103 bits (52), Expect = 4e-020
Identities = 72/78 (92%), Gaps = 3/78 (3%)
Strand = Plus / Minus
Query: 235 gccacagatctaggtcgcatcagcagcctccagaaacttgtgcgctcccgtgagtccttt 294
|||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||
Sbjct: 75 gccacagatctaggtcgcatcagc---ctccagaaacttgtgtgctcccatgagtccctt 19
Query: 295 atttgtggtacaggtaca 312
||||||||||||||||||
Sbjct: 18 atttgtggtacaggtaca 1
Score = 63.9 bits (32), Expect = 3e-008
Identities = 69/80 (86%), Gaps = 6/80 (7%)
Strand = Plus / Minus
Query: 6 agtagtttcaaaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgtt 65
|||| |||||||||||||||||||| |||| ||||||||||| | ||||| |||||
Sbjct: 306 agtactttcaaaatcactacatgct----catcatttcaatgctata--ctgtagacgtt 253
Query: 66 ttcacaagtgctgatcagaa 85
|||||||||| |||||||||
Sbjct: 252 ttcacaagtgttgatcagaa 233
>gb|BM331444.1|BM331444 PIC1_66_C01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 287
Score = 97.6 bits (49), Expect = 2e-018
Identities = 109/126 (86%), Gaps = 6/126 (4%)
Strand = Plus / Minus
Query: 111 ggcagatcgaacatcctactagcacgagtaaatttcccatgattgcggtcacggtcgtct 170
|||| |||||||||| ||||||| |||||| ||| ||||| ||||||||||||||||
Sbjct: 202 ggcaaatcgaacatc---ctagcacaagtaaa-ttctcatgagtgcggtcacggtcgtca 147
Query: 171 aattctagctaagttggcctactacaaatatatgattccataaaattgcaccgggtaaca 230
||| || |||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 146 aatgttatctaagttggc--actacaaaaatatggttccataaaattgcaccaggtaaca 89
Query: 231 cttggc 236
||||||
Sbjct: 88 cttggc 83
Score = 58.0 bits (29), Expect = 2e-006
Identities = 60/69 (86%), Gaps = 6/69 (8%)
Strand = Plus / Minus
Query: 14 caaaatcactacatgcttcgtcatcctttcaatgctacagactgtaaacgttttcacaag 73
||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||
Sbjct: 287 caaaatcactacatgct----catcatttcaatgctata--ctgtaaacgttttcacaag 234
Query: 74 tgctgatca 82
|| ||||||
Sbjct: 233 tgttgatca 225
>gb|AW564120.1|AW564120 LG1_282_F11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 63.9 bits (32), Expect = 3e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1190 tggatcctcatcaaaatcaaccccacactctgtcgcaatg 1229
|||||||||||||||||||||||| |||||||| ||||||
Sbjct: 484 tggatcctcatcaaaatcaaccccgcactctgttgcaatg 445
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 260,484
Number of Sequences: 832831
Number of extensions: 260484
Number of successful extensions: 70320
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70224
Number of HSP's gapped (non-prelim): 41
length of query: 1263
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1243
effective length of database: 474,703,049
effective search space: 590055889907
effective search space used: 590055889907
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)