BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.536
(819 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE918758.1|BE918758 OV1_4_F07.b1_A002 Ovary 1 (OV1) Sorg... 733 0.0
gb|AW924819.1|AW924819 WS1_72_B04.b1_A002 Water-stressed 1 ... 716 0.0
gb|AW678624.1|AW678624 WS1_1_B09.b1_A002 Water-stressed 1 (... 708 0.0
gb|AW678772.1|AW678772 WS1_1_B09.b2_A002 Water-stressed 1 (... 702 0.0
gb|BG048759.1|BG048759 OV1_22_F08.b1_A002 Ovary 1 (OV1) Sor... 615 e-174
gb|BG049052.1|BG049052 OV1_22_F08.g1_A002 Ovary 1 (OV1) Sor... 613 e-173
gb|BE918502.1|BE918502 OV1_4_F07.g1_A002 Ovary 1 (OV1) Sorg... 559 e-157
gb|BG240473.1|BG240473 OV1_30_E01.b1_A002 Ovary 1 (OV1) Sor... 557 e-157
gb|BI098849.1|BI098849 IP1_34_A06.b1_A002 Immature pannicle... 549 e-154
gb|CN147282.1|CN147282 WOUND1_48_F06.g1_A002 Wounded leaves... 539 e-151
gb|BI098850.1|BI098850 IP1_34_A07.b1_A002 Immature pannicle... 505 e-141
gb|BE125185.1|BE125185 DG1_14_H09.b1_A002 Dark Grown 1 (DG1... 478 e-133
gb|AW746461.1|AW746461 WS1_53_D09.b1_A002 Water-stressed 1 ... 430 e-119
gb|AW746528.1|AW746528 WS1_53_D09.g1_A002 Water-stressed 1 ... 430 e-119
gb|BI098561.1|BI098561 IP1_34_A06.g1_A002 Immature pannicle... 428 e-118
gb|CF757376.1|CF757376 DSAF1_17_B08.g1_A011 Drought-stresse... 424 e-117
gb|AW924895.1|AW924895 WS1_72_B04.g1_A002 Water-stressed 1 ... 398 e-109
gb|BI098562.1|BI098562 IP1_34_A07.g1_A002 Immature pannicle... 347 1e-093
gb|CF481330.1|CF481330 POL1_71_G11.b1_A002 Pollen Sorghum b... 272 5e-071
gb|CL170814.1|CL170814 104_372_10888963_116_31779_019 Sorgh... 246 3e-063
gb|CW469883.1|CW469883 fsbb001f222m21k0 Sorghum methylation... 246 3e-063
gb|CW473046.1|CW473046 fsbb001f228e07f0 Sorghum methylation... 202 4e-050
gb|CW213053.1|CW213053 104_644_11191343_148_37031_090 Sorgh... 151 1e-034
gb|BE356605.1|BE356605 DG1_126_A09.g1_A002 Dark Grown 1 (DG... 127 2e-027
gb|CW287218.1|CW287218 104_765_11411301_116_35521_091 Sorgh... 121 1e-025
gb|CW287219.1|CW287219 104_765_11411301_148_35525_091 Sorgh... 121 1e-025
gb|CW213052.1|CW213052 104_644_11191343_116_37030_090 Sorgh... 119 4e-025
gb|CL159906.1|CL159906 104_350_10804599_116_31823_039 Sorgh... 72 9e-011
gb|CW469882.1|CW469882 fsbb001f222m21f0 Sorghum methylation... 72 9e-011
gb|CW473047.1|CW473047 fsbb001f228e07k0 Sorghum methylation... 72 9e-011
gb|CF481415.1|CF481415 POL1_71_G11.g1_A002 Pollen Sorghum b... 70 4e-010
gb|CW066109.1|CW066109 104_313_10523512_115_30149 Sorghum m... 52 8e-005
gb|CW478973.1|CW478973 fsbb001f237c09k0 Sorghum methylation... 52 8e-005
gb|BH245474.1|BH245474 pSB0708 S. bicolor BTx623 PstI-diges... 44 0.020
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.079
gb|AW677624.1|AW677624 DG1_8_A09.g1_A002 Dark Grown 1 (DG1)... 40 0.31
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.31
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.31
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.31
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.31
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.31
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.31
>gb|BE918758.1|BE918758 OV1_4_F07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 596
Score = 733 bits (370), Expect = 0.0
Identities = 528/578 (91%), Gaps = 12/578 (2%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 581 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 524
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 523 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 466
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 465 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 406
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 405 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 346
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 345 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 286
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 285 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 226
Query: 570 cttgtttgctaagccagagtacttgtaggagtgtacattgtagaggttgttgggctcctt 629
|||||| || |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 225 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 166
Query: 630 ggtgaactgcaccttggcattgccgttgccaaactgcttcaccaggaaggagttgttctt 689
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 165 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttctt 106
Query: 690 cctcacaatctgccagatcagatcccctggaacggtcgccatttcccttcgccggagatg 749
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 105 cctcacaacctgccagatcagatccccaggaacggttgccatttcccttcgccggagatg 46
Query: 750 aggtgcctcggcgtcgcctcgctctgttccggggttgc 787
||||||| ||||||||| | ||||||||||||||||||
Sbjct: 45 aggtgccgcggcgtcgcgttgctctgttccggggttgc 8
>gb|AW924819.1|AW924819 WS1_72_B04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 716 bits (361), Expect = 0.0
Identities = 460/493 (93%)
Strand = Plus / Minus
Query: 289 gcttagtgcgtaggctgcctgttcttcttcttgacaccagacttggcaacctggaggctg 348
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttagtgcttgggctgcctgttcttcttcttgacaccagacttggcaacctggaggctg 442
Query: 349 cggtacacagagctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttg 408
|||||||| |||||||||||| |||| |||| ||||||||||||||||||||| ||||||
Sbjct: 441 cggtacactgagctcagcctagcaagagccggcttggtcagatcaggcctgtagtagttg 382
Query: 409 tcgccaacctggtttttcacagccttggccatcttgcggaactccttgcgcattacagac 468
|||| |||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 381 tcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcacagac 322
Query: 469 ttgtggctgagcttcgcgggtgtgttctgcttcttggtcttggtagtagagaggaccaca 528
||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggaccaca 262
Query: 529 gccgagtcctttccagcagctggctggatcgttacagttttcttgtttgctaagccagag 588
||||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||
Sbjct: 261 gccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgccaagccagag 202
Query: 589 tacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcaccttggca 648
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcaccttagca 142
Query: 649 ttgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgccagatc 708
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 141 ttgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatc 82
Query: 709 agatcccctggaacggtcgccatttcccttcgccggagatgaggtgcctcggcgtcgcct 768
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 81 agatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtcgcgt 22
Query: 769 cgctctgttccgg 781
||||||||||||
Sbjct: 21 tgctctgttccgg 9
>gb|AW678624.1|AW678624 WS1_1_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 708 bits (357), Expect = 0.0
Identities = 509/557 (91%), Gaps = 12/557 (2%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 566 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 509
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 508 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 451
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 450 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 391
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 390 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 331
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 330 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 271
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 270 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 211
Query: 570 cttgtttgctaagccagagtacttgtaggagtgtacattgtagaggttgttgggctcctt 629
|||||| || |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 210 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 151
Query: 630 ggtgaactgcaccttggcattgccgttgccaaactgcttcaccaggaaggagttgttctt 689
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 150 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttctt 91
Query: 690 cctcacaatctgccagatcagatcccctggaacggtcgccatttcccttcgccggagatg 749
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 90 cctcacaacctgccagatcagatccccaggaacggttgccatttcccttcgccggagatg 31
Query: 750 aggtgcctcggcgtcgc 766
||||||| |||||||||
Sbjct: 30 aggtgccgcggcgtcgc 14
>gb|AW678772.1|AW678772 WS1_1_B09.b2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 702 bits (354), Expect = 0.0
Identities = 447/478 (93%)
Strand = Plus / Minus
Query: 289 gcttagtgcgtaggctgcctgttcttcttcttgacaccagacttggcaacctggaggctg 348
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcttagtgcttgggctgcctgttcttcttcttgacaccagacttggcaacctggaggctg 432
Query: 349 cggtacacagagctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttg 408
|||||||| |||||||||||| |||| |||| ||||||||||||||||||||| ||||||
Sbjct: 431 cggtacactgagctcagcctagcaagagccggcttggtcagatcaggcctgtagtagttg 372
Query: 409 tcgccaacctggtttttcacagccttggccatcttgcggaactccttgcgcattacagac 468
|||| |||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 371 tcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcacagac 312
Query: 469 ttgtggctgagcttcgcgggtgtgttctgcttcttggtcttggtagtagagaggaccaca 528
||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 311 ttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggaccaca 252
Query: 529 gccgagtcctttccagcagctggctggatcgttacagttttcttgtttgctaagccagag 588
||||||||||||||||||||||||||||| || ||||| |||||||| || |||||||||
Sbjct: 251 gccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgccaagccagag 192
Query: 589 tacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcaccttggca 648
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 191 tgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcaccttagca 132
Query: 649 ttgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgccagatc 708
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 131 ttgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatc 72
Query: 709 agatcccctggaacggtcgccatttcccttcgccggagatgaggtgcctcggcgtcgc 766
|||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 71 agatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtcgc 14
>gb|BG048759.1|BG048759 OV1_22_F08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 442
Score = 615 bits (310), Expect = e-174
Identities = 403/434 (92%)
Strand = Plus / Minus
Query: 348 gcggtacacagagctcagcctaccaagggccgacttggtcagatcaggcctgtaatagtt 407
||||||||| |||||||||||| |||| |||| ||||||||||||||||||||| |||||
Sbjct: 442 gcggtacactgagctcagcctagcaagagccggcttggtcagatcaggcctgtagtagtt 383
Query: 408 gtcgccaacctggtttttcacagccttggccatcttgcggaactccttgcgcattacaga 467
||||| |||||| |||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 382 gtcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcacaga 323
Query: 468 cttgtggctgagcttcgcgggtgtgttctgcttcttggtcttggtagtagagaggaccac 527
|||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 cttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggaccac 263
Query: 528 agccgagtcctttccagcagctggctggatcgttacagttttcttgtttgctaagccaga 587
|||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||
Sbjct: 262 agccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgccaagccaga 203
Query: 588 gtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcaccttggc 647
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 gtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcaccttagc 143
Query: 648 attgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgccagat 707
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 142 attgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccagat 83
Query: 708 cagatcccctggaacggtcgccatttcccttcgccggagatgaggtgcctcggcgtcgcc 767
||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 82 cagatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtcgcg 23
Query: 768 tcgctctgttccgg 781
| ||||||||||||
Sbjct: 22 ttgctctgttccgg 9
>gb|BG049052.1|BG049052 OV1_22_F08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 532
Score = 613 bits (309), Expect = e-173
Identities = 452/497 (90%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 493 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 436
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 435 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 378
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 377 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 318
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 317 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 258
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 257 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 198
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 197 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 138
Query: 570 cttgtttgctaagccagagtacttgtaggagtgtacattgtagaggttgttgggctcctt 629
|||||| || |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 137 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 78
Query: 630 ggtgaactgcaccttggcattgccgttgccaaactgcttcaccaggaaggagttgttctt 689
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 77 ggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttctt 18
Query: 690 cctcacaatctgccaga 706
|||||||| ||||||||
Sbjct: 17 cctcacaacctgccaga 1
>gb|BE918502.1|BE918502 OV1_4_F07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 616
Score = 559 bits (282), Expect = e-157
Identities = 419/462 (90%), Gaps = 12/462 (2%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 462 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 405
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 404 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 347
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 346 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 287
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 286 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 227
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 226 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 167
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 166 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 107
Query: 570 cttgtttgctaagccagagtacttgtaggagtgtacattgtagaggttgttgggctcctt 629
|||||| || |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 106 cttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctcctt 47
Query: 630 ggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 46 ggtgaactgcaccttagcattgccgttgccaaactgcttcac 5
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 115 ttgcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 615 ttgcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 572
>gb|BG240473.1|BG240473 OV1_30_E01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 557 bits (281), Expect = e-157
Identities = 372/401 (92%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 381 cttggtcagatcaggcc-tgtaatagttgtcgccaacctggtttttcacagccttggcca 439
||||||||||||||||| |||| |||||||||| |||||| |||||||| ||||| ||||
Sbjct: 409 cttggtcagatcaggccctgtagtagttgtcgctaacctgatttttcacggccttagcca 350
Query: 440 tcttgcggaactccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgct 499
||||||||||||| |||||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 349 tcttgcggaactcgttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgct 290
Query: 500 tcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctggctggatcg 559
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 289 tcttggtcttggtagttgagaggaccacagccgagtcctttccagcagctggctggatag 230
Query: 560 ttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgtagaggttgt 619
| ||||| |||||||| || |||||||||| ||||||||||| || |||||||||||||
Sbjct: 229 tcacagtcttcttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgt 170
Query: 620 tgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcaccaggaagg 679
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 169 tgggctccttggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaagg 110
Query: 680 agttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccatttcccttc 739
|||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct: 109 agttgttcttcctcacaacctgccagatcagatccccaggaacggttgccatttcccttc 50
Query: 740 gccggagatgaggtgcctcggcgtcgcctcgctctgttccg 780
||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 49 gccggagatgaggtgccgcggcgtcgcgttgctctgttccg 9
>gb|BI098849.1|BI098849 IP1_34_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 402
Score = 549 bits (277), Expect = e-154
Identities = 357/384 (92%)
Strand = Plus / Minus
Query: 403 tagttgtcgccaacctggtttttcacagccttggccatcttgcggaactccttgcgcatt 462
|||||||||| |||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct: 393 tagttgtcgctaacctgatttttcacggcnttagccatcttgcggaactccttgcgcatc 334
Query: 463 acagacttgtggctgagcttcgcgggtgtgttctgcttcttggtcttggtagtagagagg 522
||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 333 acagacttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttgagagg 274
Query: 523 accacagccgagtcctttccagcagctggctggatcgttacagttttcttgtttgctaag 582
||||||||||||||||||||||||||||||||||| || ||||| |||||||| || |||
Sbjct: 273 accacagccgagtcctttccagcagctggctggatagtcacagtcttcttgttcgccaag 214
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 213 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 154
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 153 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgc 94
Query: 703 cagatcagatcccctggaacggtcgccatttcccttcgccggagatgaggtgcctcggcg 762
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 93 cagatcagatccccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcg 34
Query: 763 tcgcctcgctctgttccggggttg 786
|||| | |||||||||||||||||
Sbjct: 33 tcgcgttgctctgttccggggttg 10
>gb|CN147282.1|CN147282 WOUND1_48_F06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_F06_A002 5', mRNA sequence
Length = 715
Score = 539 bits (272), Expect = e-151
Identities = 347/372 (93%)
Strand = Plus / Minus
Query: 415 acctggtttttcacagccttggccatcttgcggaactccttgcgcattacagacttgtgg 474
||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 379 acctgatttttcacggccttagccatcttgcggaactccttgcgcatcacagacttgtga 320
Query: 475 ctgagcttcgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgag 534
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 ctgagcttagcaggtgtgttctgcttcttggtcttggtagttgagaggaccacagccgag 260
Query: 535 tcctttccagcagctggctggatcgttacagttttcttgtttgctaagccagagtacttg 594
||||||||||||||||||||||| || ||||| |||||||| || |||||||||| |||
Sbjct: 259 tcctttccagcagctggctggatagtcacagtcttcttgttcgccaagccagagtgtttg 200
Query: 595 taggagtgtacattgtagaggttgttgggctccttggtgaactgcaccttggcattgccg 654
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 199 taggagtggacgttgtagaggttgttgggctccttggtgaactgcaccttagcattgccg 140
Query: 655 ttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgccagatcagatcc 714
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 139 ttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgccagatcagatcc 80
Query: 715 cctggaacggtcgccatttcccttcgccggagatgaggtgcctcggcgtcgcctcgctct 774
|| |||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct: 79 ccaggaacggttgccatttcccttcgccggagatgaggtgccgcggcgtcgcgttgctct 20
Query: 775 gttccggggttg 786
||||||||||||
Sbjct: 19 gttccggggttg 8
>gb|BI098850.1|BI098850 IP1_34_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 355
Score = 505 bits (255), Expect = e-141
Identities = 323/346 (93%)
Strand = Plus / Minus
Query: 441 cttgcggaactccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgctt 500
||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||
Sbjct: 355 cttgcggaactccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgctt 296
Query: 501 cttggtcttggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgt 560
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 295 cttggtcttggtagtgnagaggaccacagccgagtcctttccagcagctggctggatagt 236
Query: 561 tacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgtagaggttgtt 620
||||| |||||||| || |||||||||| ||||||||||| || ||||||||||||||
Sbjct: 235 cacagtcttcttgttcgccaagccagagtgtttgtaggagtggacgttgtagaggttgtt 176
Query: 621 gggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcaccaggaagga 680
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 175 gggctccttggtgaactgcaccttagcattgccgttgccaaactgcttcacaaggaagga 116
Query: 681 gttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccatttcccttcg 740
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 115 gttgttcttcctcacaacctgccagatcagatccccaggaacggttgccatttcccttcg 56
Query: 741 ccggagatgaggtgcctcggcgtcgcctcgctctgttccggggttg 786
|||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 55 ccggagatgaggtgccgcggcgtcgcgttgctctgttccggggttg 10
>gb|BE125185.1|BE125185 DG1_14_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 431
Score = 478 bits (241), Expect = e-133
Identities = 307/329 (93%)
Strand = Plus / Minus
Query: 458 gcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtcttggtagtag 517
|||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
Sbjct: 431 gcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtcttggtagttg 372
Query: 518 agaggaccacagccgagtcctttccagcagctggctggatcgttacagttttcttgtttg 577
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct: 371 agaggaccacagccgagtcctttccagcagctggctggatagtcacagtcttcttgttcg 312
Query: 578 ctaagccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaact 637
| |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 311 ccaagccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaact 252
Query: 638 gcaccttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaa 697
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 251 gcaccttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaa 192
Query: 698 tctgccagatcagatcccctggaacggtcgccatttcccttcgccggagatgaggtgcct 757
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 191 cctgccagatcagatccccaggaacggttgccatttcccttcgccggagatgaggtgccg 132
Query: 758 cggcgtcgcctcgctctgttccggggttg 786
||||||||| | |||||||||||||||||
Sbjct: 131 cggcgtcgcgttgctctgttccggggttg 103
>gb|AW746461.1|AW746461 WS1_53_D09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 430 bits (217), Expect = e-119
Identities = 339/377 (89%), Gaps = 12/377 (3%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 381 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 324
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 323 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 266
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 265 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 206
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 205 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 146
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 145 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 86
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 85 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 26
Query: 570 cttgtttgctaagccag 586
|||||| || |||||||
Sbjct: 25 cttgttcgccaagccag 9
>gb|AW746528.1|AW746528 WS1_53_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 464
Score = 430 bits (217), Expect = e-119
Identities = 339/377 (89%), Gaps = 12/377 (3%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 381 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 324
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 323 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 266
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 265 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 206
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 205 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 146
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 145 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 86
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 85 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 26
Query: 570 cttgtttgctaagccag 586
|||||| || |||||||
Sbjct: 25 cttgttcgccaagccag 9
>gb|BI098561.1|BI098561 IP1_34_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 523
Score = 428 bits (216), Expect = e-118
Identities = 338/376 (89%), Gaps = 12/376 (3%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 372 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 315
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 314 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 257
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 256 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 197
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 196 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 137
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 136 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 77
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 76 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 17
Query: 570 cttgtttgctaagcca 585
|||||| || ||||||
Sbjct: 16 cttgttcgccaagcca 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 117 gcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 523 gcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 482
>gb|CF757376.1|CF757376 DSAF1_17_B08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_17_B08_A011 3', mRNA sequence
Length = 528
Score = 424 bits (214), Expect = e-117
Identities = 330/366 (90%), Gaps = 12/366 (3%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 364 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 307
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 306 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 249
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 248 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 189
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 188 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 129
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 128 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 69
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagtttt 569
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 68 ggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagtctt 9
Query: 570 cttgtt 575
||||||
Sbjct: 8 cttgtt 3
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 115 ttgcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 517 ttgcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 474
>gb|AW924895.1|AW924895 WS1_72_B04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 424
Score = 398 bits (201), Expect = e-109
Identities = 311/345 (90%), Gaps = 12/345 (3%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 341 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 284
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 283 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 226
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 225 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 166
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 165 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 106
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 105 ctccttgcgcatcacagacttgtgactgagcttagcaggggtgttctgcttcttggtctt 46
Query: 510 ggtagtagagaggaccacagccgagtcctttccagcagctggctg 554
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ggtagttgagaggaccacagccgagtcctttccagcagctggctg 1
>gb|BI098562.1|BI098562 IP1_34_A07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 462
Score = 347 bits (175), Expect = 1e-093
Identities = 282/315 (89%), Gaps = 12/315 (3%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 311 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 254
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 253 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 196
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 195 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 136
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 135 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 76
Query: 450 ctccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtctt 509
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 75 ctccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggtctt 16
Query: 510 ggtagtagagaggac 524
|||||| ||||||||
Sbjct: 15 ggtagttgagaggac 1
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 117 gcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 462 gcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 421
>gb|CF481330.1|CF481330 POL1_71_G11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_G11_A002 3', mRNA sequence
Length = 464
Score = 272 bits (137), Expect = 5e-071
Identities = 232/261 (88%), Gaps = 12/261 (4%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 257 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 200
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 199 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 142
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 141 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 82
Query: 390 atcaggcctgtaatagttgtcgccaacctggtttttcacagccttggccatcttgcggaa 449
|||||||||||| |||||||||| |||||| |||||||| ||||| ||||||||||||||
Sbjct: 81 atcaggcctgtagtagttgtcgctaacctgatttttcacggccttagccatcttgcggaa 22
Query: 450 ctccttgcgcattacagactt 470
|||||||||||| ||||||||
Sbjct: 21 ctccttgcgcatcacagactt 1
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 115 ttgcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 410 ttgcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 367
>gb|CL170814.1|CL170814 104_372_10888963_116_31779_019 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10888963, DNA
sequence
Length = 652
Score = 246 bits (124), Expect = 3e-063
Identities = 151/160 (94%)
Strand = Plus / Minus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 340
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 339 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgc 280
Query: 703 cagatcagatcccctggaacggtcgccatttcccttcgcc 742
|||||||||||||| |||||||| ||||||||||||||||
Sbjct: 279 cagatcagatccccaggaacggttgccatttcccttcgcc 240
Score = 194 bits (98), Expect = 9e-048
Identities = 128/138 (92%)
Strand = Plus / Minus
Query: 447 gaactccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggt 506
||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 652 gaactccttgcgcatcacagacttgtgactgagcttagcaggtgtgttctgcttcttggt 593
Query: 507 cttggtagtagagaggaccacagccgagtcctttccagcagctggctggatcgttacagt 566
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 592 cttggtagttgagaggaccacagccgagtcctttccagcagctggctggatagtcacagt 533
Query: 567 tttcttgtttgctaagcc 584
|||||||| || |||||
Sbjct: 532 cttcttgttcgccaagcc 515
>gb|CW469883.1|CW469883 fsbb001f222m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222m21, DNA
sequence
Length = 574
Score = 246 bits (124), Expect = 3e-063
Identities = 151/160 (94%)
Strand = Plus / Minus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 314
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 313 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcctcacaacctgc 254
Query: 703 cagatcagatcccctggaacggtcgccatttcccttcgcc 742
|||||||||||||| |||||||| ||||||||||||||||
Sbjct: 253 cagatcagatccccaggaacggttgccatttcccttcgcc 214
Score = 123 bits (62), Expect = 3e-026
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 499 ttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctggctggatc 558
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttcttggtcttggtagttgagaggaccacagccgagtcctttccagcagctggctggata 515
Query: 559 gttacagttttcttgtttgctaagcc 584
|| ||||| |||||||| || |||||
Sbjct: 514 gtcacagtcttcttgttcgccaagcc 489
>gb|CW473046.1|CW473046 fsbb001f228e07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228e07, DNA
sequence
Length = 766
Score = 202 bits (102), Expect = 4e-050
Identities = 185/210 (88%), Gaps = 12/210 (5%)
Strand = Plus / Minus
Query: 218 caagtctcaaaactgttggagacattggataaatataagctgagactatgggcaccaac- 276
|||||||||||||||||||| |||| | ||||| |||||||| ||||||| ||||||||
Sbjct: 464 caagtctcaaaactgttgga-acatag-ataaacataagctgggactatgagcaccaaca 407
Query: 277 -------gacagaacacaggcttagtgcgtaggctgcctgttcttcttcttgacaccaga 329
||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 406 gccccttgacagaacaa--gcttagtgcttgggctgcctgttcttcttcttgacaccaga 349
Query: 330 cttggcaacctggaggctgcggtacacagagctcagcctaccaagggccgacttggtcag 389
||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||
Sbjct: 348 cttggcaacctggaggctgcggtacactgagctcagcctagcaagagccggcttggtcag 289
Query: 390 atcaggcctgtaatagttgtcgccaacctg 419
|||||||||||| |||||||||| ||||||
Sbjct: 288 atcaggcctgtagtagttgtcgctaacctg 259
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 115 ttgcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 617 ttgcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 574
>gb|CW213053.1|CW213053 104_644_11191343_148_37031_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191343, DNA
sequence
Length = 675
Score = 151 bits (76), Expect = 1e-034
Identities = 112/124 (90%)
Strand = Plus / Minus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||| |||
Sbjct: 470 ccagagtgcttgtaggagtgaacattgtagagattgttgggctccttgctgaactgaacc 411
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| |||||||| ||||||||||| || | |||||||||||| ||||||||||| ||||||
Sbjct: 410 ttcgcattgccattgccaaactgtttgatcaggaaggagttattcttcctcacgatctgc 351
Query: 703 caga 706
||||
Sbjct: 350 caga 347
Score = 42.1 bits (21), Expect = 0.079
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 451 tccttgcgcattacagacttgtggctgagcttcgcgggtgtgttctgcttcttggtcttg 510
||||||||||| |||||||||||| ||| | || || |||| |||||||| || |||
Sbjct: 675 tccttgcgcatgacagacttgtggtggaggctggcaggcttgttttgcttctttgttttg 616
Query: 511 gtagtagagaggaccac 527
|| || |||||||||||
Sbjct: 615 gttgtcgagaggaccac 599
>gb|BE356605.1|BE356605 DG1_126_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 100
Score = 127 bits (64), Expect = 2e-027
Identities = 91/100 (91%)
Strand = Plus / Minus
Query: 407 tgtcgccaacctggtttttcacagccttggccatcttgcggaactccttgcgcattacag 466
|||||| |||||| |||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 100 tgtcgctaacctgatttttcacggccttagccatcttgcggaactccttgcgcatcacag 41
Query: 467 acttgtggctgagcttcgcgggtgtgttctgcttcttggt 506
||||||| |||||||| || |||||||||||||| |||||
Sbjct: 40 acttgtgactgagcttagcaggtgtgttctgctttttggt 1
>gb|CW287218.1|CW287218 104_765_11411301_116_35521_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411301, DNA
sequence
Length = 600
Score = 121 bits (61), Expect = 1e-025
Identities = 103/117 (88%)
Strand = Plus / Plus
Query: 303 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 362
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||
Sbjct: 336 ctgcctgttcttcttcttgactccagacttggcaacctggaggctccggtacactgcact 395
Query: 363 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctg 419
|||||| |||| || | |||||| |||||||||||||| |||||||| || |||||
Sbjct: 396 cagccttgcaagagctggcttggtaagatcaggcctgtagtagttgtcaccgacctg 452
>gb|CW287219.1|CW287219 104_765_11411301_148_35525_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411301, DNA
sequence
Length = 672
Score = 121 bits (61), Expect = 1e-025
Identities = 103/117 (88%)
Strand = Plus / Minus
Query: 303 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 362
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||
Sbjct: 427 ctgcctgttcttcttcttgactccagacttggcaacctggaggctccggtacactgcact 368
Query: 363 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctg 419
|||||| |||| || | |||||| |||||||||||||| |||||||| || |||||
Sbjct: 367 cagccttgcaagagctggcttggtaagatcaggcctgtagtagttgtcaccgacctg 311
>gb|CW213052.1|CW213052 104_644_11191343_116_37030_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191343, DNA
sequence
Length = 586
Score = 119 bits (60), Expect = 4e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| |||||||||||| ||||||| ||| ||||||||||||||| ||||||| |||
Sbjct: 419 ccagagtgcttgtaggagtgaacattgtggagattgttgggctccttgctgaactgaacc 478
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
| |||||||| |||||||||| || | ||||||||||| ||||||||||| ||||||
Sbjct: 479 gtcgcattgccagtgccaaactgattgatcaggaaggagtgattcttcctcacgatctgc 538
Query: 703 caga 706
||||
Sbjct: 539 caga 542
Score = 79.8 bits (40), Expect = 4e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 427 acagccttggccatcttgcggaactccttgcgcattacagacttgtgg 474
||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 189 acagcctaggccatcttgcggaactccttgcgcatgacagacttgtgg 236
>gb|CL159906.1|CL159906 104_350_10804599_116_31823_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804599, DNA
sequence
Length = 759
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 115 ttgcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 586 ttgcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 629
>gb|CW469882.1|CW469882 fsbb001f222m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f222m21, DNA
sequence
Length = 721
Score = 71.9 bits (36), Expect = 9e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 415 acctggtttttcacagccttggccatcttgcggaactccttgcgcattacagactt 470
||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||||
Sbjct: 666 acctgatttttcacgggcttagccatcttgcggaactccttgcgcatcacagactt 721
>gb|CW473047.1|CW473047 fsbb001f228e07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228e07, DNA
sequence
Length = 619
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 115 ttgcaaacaaagcagcaatcaagtgccaagcaatctttgtcatg 158
|||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 443 ttgcaaacaaagcagcaatcaagtgccaagcaatttttgacatg 486
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 218 caagtctcaaaactgttgga 237
||||||||||||||||||||
Sbjct: 596 caagtctcaaaactgttgga 615
>gb|CF481415.1|CF481415 POL1_71_G11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_G11_A002 5', mRNA sequence
Length = 590
Score = 69.9 bits (35), Expect = 4e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 700 tgccagatcagatcccctggaacggtcgccatttcccttcgcc 742
||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 590 tgccagatcagatccccaggaacggttgccatttcccttcgcc 548
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 741 ccggagatgaggtgcctcggcgtcgcctcgctctgttccggggttg 786
|||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 512 ccggagatgaggtgccgcggcgtcgcgttgctctgttccggggttg 467
>gb|CW066109.1|CW066109 104_313_10523512_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523512, DNA
sequence
Length = 584
Score = 52.0 bits (26), Expect = 8e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 431 ccttggccatcttgcggaactccttgcgcattacagacttgt 472
|||||||||||||| |||| |||||| |||| ||||||||||
Sbjct: 200 ccttggccatcttgtggaattccttgtgcatgacagacttgt 159
>gb|CW478973.1|CW478973 fsbb001f237c09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237c09, DNA
sequence
Length = 494
Score = 52.0 bits (26), Expect = 8e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 431 ccttggccatcttgcggaactccttgcgcattacagacttgt 472
|||||||||||||| |||| |||||| |||| ||||||||||
Sbjct: 311 ccttggccatcttgtggaattccttgtgcatgacagacttgt 270
>gb|BH245474.1|BH245474 pSB0708 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0708, DNA sequence
Length = 923
Score = 44.1 bits (22), Expect = 0.020
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 431 ccttggccatcttgcggaactccttgcgcattacagacttgt 472
|||||||||||||| |||| |||||| |||| | ||||||||
Sbjct: 384 ccttggccatcttgtggaagtccttgtgcatgaaagacttgt 343
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.079
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 799 cgtacctgcccgggcggccgc 819
|||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgc 119
>gb|AW677624.1|AW677624 DG1_8_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 106
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 caaccaaaagcacccaataa 53
||||||||||||||||||||
Sbjct: 96 caaccaaaagcacccaataa 77
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 800 gtacctgcccgggcggccgc 819
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 230,238
Number of Sequences: 832831
Number of extensions: 230238
Number of successful extensions: 62274
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62196
Number of HSP's gapped (non-prelim): 77
length of query: 819
length of database: 491,359,669
effective HSP length: 20
effective length of query: 799
effective length of database: 474,703,049
effective search space: 379287736151
effective search space used: 379287736151
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)