BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.387
(908 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 617 e-175
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 490 e-136
gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1... 416 e-114
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 379 e-103
gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum met... 168 6e-040
gb|BE125178.1|BE125178 DG1_14_A08.b1_A002 Dark Grown 1 (DG1... 157 2e-036
gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation... 143 3e-032
gb|BE358790.1|BE358790 DG1_32_E07.b1_A002 Dark Grown 1 (DG1... 127 2e-027
gb|AW923259.1|AW923259 DG1_50_D06.g1_A002 Dark Grown 1 (DG1... 113 3e-023
gb|BE358893.1|BE358893 DG1_32_E07.g1_A002 Dark Grown 1 (DG1... 105 7e-021
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 98 2e-018
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 98 2e-018
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 98 2e-018
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 98 2e-018
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 98 2e-018
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 98 2e-018
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 84 3e-014
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 84 3e-014
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 82 1e-013
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 82 1e-013
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 82 1e-013
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 82 1e-013
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 82 1e-013
gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation... 74 2e-011
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 66 6e-009
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 66 6e-009
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 58 1e-006
gb|CW371155.1|CW371155 fsbb001f046h18f0 Sorghum methylation... 58 1e-006
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 54 2e-005
gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorgh... 54 2e-005
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 54 2e-005
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 54 2e-005
gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation... 54 2e-005
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 48 0.001
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 48 0.001
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 46 0.006
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 46 0.006
gb|BG464391.1|BG464391 EM1_69_B11.g1_A002 Embryo 1 (EM1) So... 46 0.006
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 46 0.006
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 46 0.006
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 46 0.006
gb|CW412130.1|CW412130 fsbb001f107k02f0 Sorghum methylation... 42 0.088
gb|AI723861.1|AI723861 RHIZ1_28_D10.y1_A001 Rhizome1 (RHIZ1... 42 0.088
gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorgh... 40 0.35
gb|CL191324.1|CL191324 104_410_10906720_114_32533_060 Sorgh... 40 0.35
gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum m... 40 0.35
gb|CW110423.1|CW110423 104_483_11103696_148_34524_094 Sorgh... 40 0.35
gb|CW155340.1|CW155340 104_557_11146087_148_36356_018 Sorgh... 40 0.35
gb|CW159279.1|CW159279 104_565_11149276_116_36410_010 Sorgh... 40 0.35
gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorgh... 40 0.35
gb|CW265113.1|CW265113 104_734_11231683_116_35257_076 Sorgh... 40 0.35
gb|CW265114.1|CW265114 104_734_11231683_148_35261_076 Sorgh... 40 0.35
gb|CW302450.1|CW302450 104_786_11464725_116_35662_085 Sorgh... 40 0.35
gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation... 40 0.35
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 40 0.35
gb|AW678309.1|AW678309 WS1_14_G01.g1_A002 Water-stressed 1 ... 40 0.35
gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 ... 40 0.35
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 40 0.35
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 40 0.35
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 40 0.35
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 40 0.35
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 40 0.35
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 40 0.35
gb|BG102665.1|BG102665 RHIZ2_35_G08.g1_A003 Rhizome2 (RHIZ2... 40 0.35
gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1... 40 0.35
gb|CD220568.1|CD220568 CCC1_68_B04.b1_A007 Callus culture/c... 40 0.35
gb|CD221837.1|CD221837 CCC1_71_F05.b1_A007 Callus culture/c... 40 0.35
gb|CD222476.1|CD222476 CCC1_22_B04.b1_A007 Callus culture/c... 40 0.35
gb|CD222500.1|CD222500 CCC1_22_B03.b1_A007 Callus culture/c... 40 0.35
gb|CD223155.1|CD223155 CCC1_26_G01.b1_A007 Callus culture/c... 40 0.35
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 40 0.35
gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/c... 40 0.35
gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/c... 40 0.35
gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/c... 40 0.35
gb|CD228493.1|CD228493 CCC1_8_E11.b1_A007 Callus culture/ce... 40 0.35
gb|CD431984.1|CD431984 ETH1_12_F04.b1_A002 Ethylene-treated... 40 0.35
gb|CD432114.1|CD432114 ETH1_26_H07.b1_A002 Ethylene-treated... 40 0.35
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 40 0.35
>gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_A10_A002 5', mRNA sequence
Length = 693
Score = 617 bits (311), Expect = e-175
Identities = 407/439 (92%)
Strand = Plus / Minus
Query: 470 ccgttgatgatgttcgtggtcaggccgtatccggggagcctccccgcggcgcggtcggtg 529
|||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||| |
Sbjct: 688 ccgttgatgatgttggtggtcacgccatacccggggagcctccccgcggcgcggtcgtcg 629
Query: 530 gcggagggcctccagtcgccggtcatcacggcgtggcacgagggcttgggcgactgcggc 589
||||||||| ||||| ||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 628 gcggagggcgtccagctgccggtcatgacggcgtggcacgacggcttcggcgactgcggc 569
Query: 590 gtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtcc 649
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 568 gtcatccagaaccagatggccgtcttgaaggccaccacggggtcgctcgacaccaggtcc 509
Query: 650 gggtcgcccaccaggttcaggttcagcgcttgcccggcgagcctgtagttgtacttatga 709
|||| |||||||||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct: 508 gggttgcccaccaggttcaggttcagcgcttgcccagcttgcctgtagttgtactcatga 449
Query: 710 gttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttcacc 769
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 448 gttagctgtatgggtcctcgtccatagtagggtgggtccgtggggttctgttccttcacc 389
Query: 770 cggcagtatccccaggcaaacggtccatccggagcagtcgcccatccaccggtggtttcg 829
||||||||||||||||||||| ||||| |||||||||| | |||||||||||| ||||||
Sbjct: 388 cggcagtatccccaggcaaactgtccacccggagcagttggccatccaccggtagtttcg 329
Query: 830 tgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcgccggtg 889
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 328 tgggacgtctgtccgaagaaggcggcgagctcccgccttcgggtctggtcgtcgccggtg 269
Query: 890 gtgccgaagccggggaact 908
|||||||||||||||||||
Sbjct: 268 gtgccgaagccggggaact 250
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 490 bits (247), Expect = e-136
Identities = 399/451 (88%), Gaps = 9/451 (1%)
Strand = Plus / Minus
Query: 326 cctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcata 385
|||||||||||||||||| | ||| || |||||||||||||| | ||||| |||||||
Sbjct: 442 cctccgtaaggcttctggtccttgcaggcgatgttgtccccgtagcgcactcggagcata 383
Query: 386 ccgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtggag 445
|| ||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 382 tcggagtacctcttgtagtagccgacccggtcctt---------ggcggcgtcggtggac 332
Query: 446 cggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccgggg 505
|| ||| ||||||||| | || |||||||||||||| ||||||| ||| || ||||||
Sbjct: 331 tggcccttgccgcactccatcccgccgttgatgatgttggtggtcacgccatacccgggg 272
Query: 506 agcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtgg 565
||||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||
Sbjct: 271 agcctccccgcggcgcggtcgtcggcggagggcgtccagctgccggtcatgacggcgtgg 212
Query: 566 cacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctacc 625
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 211 cacgacggcttcggcgactgcggcgtcatccagaaccagatggccgtcttgaaggccacc 152
Query: 626 acggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgcccg 685
|||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 151 acggggtcgctcgacaccaggtccgggttgcccaccaggttcaggttcagcgcttgccca 92
Query: 686 gcgagcctgtagttgtacttatgagttagctgtatgggtcctcgtccatagtagggtggg 745
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gcttgcctgtagttgtactcatgagttagctgtatgggtcctcgtccatagtagggtggg 32
Query: 746 tccgtctgtttctgttccttcacccggcagt 776
||||| | ||||||||||||||||||||||
Sbjct: 31 tccgtggggttctgttccttcacccggcagt 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 255 ttaggtagagaggcaaacacacgtg-aaggcttgca 289
|||| |||||||||||||||||||| ||||||||||
Sbjct: 503 ttagctagagaggcaaacacacgtgaaaggcttgca 468
>gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 416 bits (210), Expect = e-114
Identities = 267/286 (93%)
Strand = Plus / Minus
Query: 623 accacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgc 682
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 520 accacggggtcgctcgacaccaggtccgggttgcccaccaggttcaggttcagcgcttgc 461
Query: 683 ccggcgagcctgtagttgtacttatgagttagctgtatgggtcctcgtccatagtagggt 742
|| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccagcttgcctgtagttgtactcatgagttagctgtatgggtcctcgtccatagtagggt 401
Query: 743 gggtccgtctgtttctgttccttcacccggcagtatccccaggcaaacggtccatccgga 802
|||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 400 gggtccgtggggttctgttccttcacccggcagtatccccaggcaaactgtccacccgga 341
Query: 803 gcagtcgcccatccaccggtggtttcgtgggacgtctggccgaagaaggcggcgagctcc 862
||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 gcagttggccatccaccggtagtttcgtgggacgtctgtccgaagaaggcggcgagctcc 281
Query: 863 cgcctgcgcgtctgctcgtcgccggtggtgccgaagccggggaact 908
||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct: 280 cgccttcgggtctggtcgtcgccggtggtgccgaagccggggaact 235
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 379 bits (191), Expect = e-103
Identities = 331/379 (87%), Gaps = 9/379 (2%)
Strand = Plus / Minus
Query: 326 cctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcata 385
|||||||||||||||||| | ||| || |||||||||||||| | ||||| |||||||
Sbjct: 606 cctccgtaaggcttctggtccttgcaggcgatgttgtccccgtagcgcactcggagcata 547
Query: 386 ccgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtggag 445
|| ||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 546 tcggagtacctcttgtagtagccgacccggtcctt---------ggcggcgtcggtggac 496
Query: 446 cggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccgggg 505
|| ||| ||||||||| | || |||||||||||||| ||||||| ||| || ||||||
Sbjct: 495 tggcccttgccgcactccatcccgccgttgatgatgttggtggtcacgccatacccgggg 436
Query: 506 agcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtgg 565
||||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||
Sbjct: 435 agcctccccgcggcgcggtcgtcggcggagggcgtccagctgccggtcatgacggcgtgg 376
Query: 566 cacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctacc 625
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 375 cacgacggcttcggcgactgcggcgtcatccagaaccagatggccgtcttgaaggccacc 316
Query: 626 acggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgcccg 685
|||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 315 acggggtcgctcgacaccaggtccgggttgcccaccaggttcaggttcagcgcttgccca 256
Query: 686 gcgagcctgtagttgtact 704
|| |||||||||||||||
Sbjct: 255 gcttgcctgtagttgtact 237
Score = 168 bits (85), Expect = 6e-040
Identities = 106/113 (93%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 117 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtggggttctgttccttc 58
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
|||||||||||||||||||||||| ||||| |||||||||| | |||||||||
Sbjct: 57 acccggcagtatccccaggcaaactgtccacccggagcagttggccatccacc 5
Score = 46.1 bits (23), Expect = 0.006
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Minus
Query: 260 tagagaggcaaacacacgtg-aaggcttgca 289
|||||||||||||||||||| ||||||||||
Sbjct: 662 tagagaggcaaacacacgtgaaaggcttgca 632
>gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431706, DNA
sequence
Length = 609
Score = 168 bits (85), Expect = 6e-040
Identities = 106/113 (93%)
Strand = Plus / Plus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 88 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtggggttctgttccttc 147
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
|||||||||||||||||||||||| ||||| |||||||||| | |||||||||
Sbjct: 148 acccggcagtatccccaggcaaactgtccacccggagcagttggccatccacc 200
Score = 143 bits (72), Expect = 3e-032
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctg 876
|||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 320 accggtagtttcgtgggacgtctgtccgaagaaggcggcgagctcccgccttcgggtctg 379
Query: 877 ctcgtcgccggtggtgccgaagccggggaact 908
|||||||||||||||||||||||||||||||
Sbjct: 380 gtcgtcgccggtggtgccgaagccggggaact 411
>gb|BE125178.1|BE125178 DG1_14_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 342
Score = 157 bits (79), Expect = 2e-036
Identities = 103/111 (92%)
Strand = Plus / Minus
Query: 798 ccggagcagtcgcccatccaccggtggtttcgtgggacgtctggccgaagaaggcggcga 857
|||||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct: 338 ccggagcagttggccatccaccggtagtttcgtggaacgtctgtccgaagaaggcggcga 279
Query: 858 gctcccgcctgcgcgtctgctcgtcgccggtggtgccgaagccggggaact 908
|||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct: 278 gctcccgccttcgggtctggtcgtcgccggtggtgccgaagccggggaact 228
>gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198p08, DNA
sequence
Length = 772
Score = 143 bits (72), Expect = 3e-032
Identities = 164/196 (83%), Gaps = 9/196 (4%)
Strand = Plus / Minus
Query: 326 cctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcata 385
|||||||||||||||||| | ||| || |||||||||||||| | ||||| |||||||
Sbjct: 187 cctccgtaaggcttctggtccttgcaggcgatgttgtccccgtagcgcactcggagcata 128
Query: 386 ccgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtggag 445
|| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 127 tcggagtacctcttgtagtagccgacccggtccttggcgg---------cgtcggtggac 77
Query: 446 cggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccgggg 505
|| ||| ||||||||| | || |||||||||||||| ||||||| ||| || ||||||
Sbjct: 76 tggcccttgccgcactccatcccgccgttgatgatgttggtggtcacgccatacccgggg 17
Query: 506 agcctccccgcggcgc 521
||||||||||||||||
Sbjct: 16 agcctccccgcggcgc 1
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 255 ttaggtagagaggcaaacacacgtg-aaggcttgca 289
|||| |||||||||||||||||||| ||||||||||
Sbjct: 248 ttagctagagaggcaaacacacgtgaaaggcttgca 213
>gb|BE358790.1|BE358790 DG1_32_E07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 101
Score = 127 bits (64), Expect = 2e-027
Identities = 91/100 (91%)
Strand = Plus / Minus
Query: 717 gtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttcacccggcagt 776
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct: 101 gtatgggtcctcgtccatagtagggtgggtccgtggggttttgttccttcacccggcagt 42
Query: 777 atccccaggcaaacggtccatccggagcagtcgcccatcc 816
|||| ||||||||| ||||| |||||||||| | ||||||
Sbjct: 41 atccacaggcaaactgtccacccggagcagttggccatcc 2
>gb|AW923259.1|AW923259 DG1_50_D06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 653
Score = 113 bits (57), Expect = 3e-023
Identities = 90/101 (89%)
Strand = Plus / Minus
Query: 326 cctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcata 385
|||||||||||||||||| | ||| || |||||||||||||| | ||||| |||||||
Sbjct: 414 cctccgtaaggcttctggtccttgcaggcgatgttgtccccgtagcgcactcggagcata 355
Query: 386 ccgcagtacctcttgtagtagccgacccggtccttggcggc 426
|| |||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcggagtacctcttgtagtagccgacccggtccttggcggc 314
Score = 48.1 bits (24), Expect = 0.001
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 255 ttaggtagagaggcaaacacacgtg-aaggcttgca 289
|||| |||||||||||||||||||| ||||||||||
Sbjct: 475 ttagctagagaggcaaacacacgtgaaaggcttgca 440
>gb|BE358893.1|BE358893 DG1_32_E07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 128
Score = 105 bits (53), Expect = 7e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 326 cctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcata 385
|||||||||||||||||| | |||||| |||||||||||||| | ||||| |||||||
Sbjct: 125 cctccgtaaggcttctggtccttgcatgcgatgttgtccccgtagcgcactcggagcata 66
Query: 386 ccgcagtacctcttgtagtagccgacccggtccttggcggc 426
|| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 65 tcggagtacctctcgtactagccgacccggtccttggcggc 25
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 318
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 80 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 136
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 209 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 153
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 326 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 270
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 364 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 308
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 173 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 117
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 83.8 bits (42), Expect = 3e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 557 acggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtct 614
|||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 256 acggcgtggcacgacggcttgggcggctgcggcgtcatccagaaccagacggcggtct 313
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 83.8 bits (42), Expect = 3e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 557 acggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtct 614
|||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 265 acggcgtggcacgacggcttgggcggctgcggcgtcatccagaaccagacggcggtct 322
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 398 gtcatgacgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 346
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 gtcatgacgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 365
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 81.8 bits (41), Expect = 1e-013
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 547 gccggtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 186 gccggtcatgacggcgtggcacgacggcttgggcgactgcggcgttatccaaaacca 130
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
||||||||||||||| | ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 217 cgtcatccagaaccacagcgccgtcttgaaggataccacggggtcggtcgccaccaggtc 158
Query: 649 cgggt 653
|||||
Sbjct: 157 cgggt 153
>gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
||||||||||||||| | ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 305 cgtcatccagaaccacagcgccgtcttgaaggataccacggggtcggtcgccaccaggtc 246
Query: 649 cgggt 653
|||||
Sbjct: 245 cgggt 241
>gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030o20, DNA
sequence
Length = 627
Score = 73.8 bits (37), Expect = 2e-011
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctc 861
||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 216 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctc 260
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||||||||| ||| |||||||||||||| | ||||||||||| |
Sbjct: 484 cgtggcacgacggcttgggcgacctcggggtcatccagaaccacagcgccgtcttgaacg 425
Query: 621 ctaccacggggtc 633
| ||| |||||||
Sbjct: 424 ccacctcggggtc 412
>gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 5', mRNA sequence
Length = 723
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||||||||| ||| |||||||||||||| | ||||||||||| |
Sbjct: 675 cgtggcacgacggcttgggcgacctcggggtcatccagaaccacagcgccgtcttgaacg 616
Query: 621 ctaccacggggtc 633
| ||| |||||||
Sbjct: 615 ccacctcggggtc 603
>gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230799, DNA
sequence
Length = 583
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||| ||||| |||||||||||| ||| |||||||||||||| | ||||||||||| |
Sbjct: 318 cgtgacacgacggcttgggcgacctcggggtcatccagaaccacagcgccgtcttgaacg 377
Query: 621 ctaccacggggtc 633
| ||| |||||||
Sbjct: 378 ccacctcggggtc 390
>gb|CW371155.1|CW371155 fsbb001f046h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046h18, DNA
sequence
Length = 415
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 880 gtcgccggtggtgccgaagccggggaact 908
|||||||||||||||||||||||||||||
Sbjct: 1 gtcgccggtggtgccgaagccggggaact 29
>gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523499, DNA
sequence
Length = 537
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 591 tcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccg 650
||||||||||||||| ||||||||||| || | ||||||||| |||||||| |||||
Sbjct: 345 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 404
Query: 651 ggt 653
|||
Sbjct: 405 ggt 407
>gb|CW117036.1|CW117036 104_493_11107443_148_34610_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107443, DNA
sequence
Length = 329
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 591 tcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccg 650
||||||||||||||| ||||||||||| || | ||||||||| |||||||| |||||
Sbjct: 87 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 146
Query: 651 ggt 653
|||
Sbjct: 147 ggt 149
>gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404861, DNA
sequence
Length = 627
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 591 tcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccg 650
||||||||||||||| ||||||||||| || | ||||||||| |||||||| |||||
Sbjct: 198 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 257
Query: 651 ggt 653
|||
Sbjct: 258 ggt 260
>gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182a11, DNA
sequence
Length = 633
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 591 tcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccg 650
||||||||||||||| ||||||||||| || | ||||||||| |||||||| |||||
Sbjct: 409 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 468
Query: 651 ggt 653
|||
Sbjct: 469 ggt 471
>gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283n22, DNA
sequence
Length = 617
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 591 tcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccg 650
||||||||||||||| ||||||||||| || | ||||||||| |||||||| |||||
Sbjct: 8 tcatccagaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 67
Query: 651 ggt 653
|||
Sbjct: 68 ggt 70
>gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_9_D11_A002 3', mRNA sequence
Length = 812
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 594 tccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccgggt 653
|||||||||||| ||||||||||| || ||||||| |||| ||||||| ||||||||
Sbjct: 450 tccagaaccagagcgccgtcttgaacgcgaccacggcgtcttgcgccaccctgtccgggt 391
>gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_9_D11_A002 5', mRNA sequence
Length = 837
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 594 tccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccgggt 653
|||||||||||| ||||||||||| || ||||||| |||| ||||||| ||||||||
Sbjct: 692 tccagaaccagagcgccgtcttgaacgcgaccacggcgtcttgcgccaccctgtccgggt 633
>gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805558, DNA
sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
|||||||||| ||||||||| |||||||||||||||||||
Sbjct: 156 cgtggcacgacggcttgggccggcgcggcgtcatccagaacca 114
>gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
|||||||||| ||||||||| |||||||||||||||||||
Sbjct: 434 cgtggcacgacggcttgggccggcgcggcgtcatccagaacca 476
>gb|BG464391.1|BG464391 EM1_69_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 308
Score = 46.1 bits (23), Expect = 0.006
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 591 tcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtccg 650
||||||| ||||||| ||||||||||| || | ||||||||| |||||||| |||||
Sbjct: 166 tcatccacaaccagagcgccgtcttgaacgcgatcacggggtcctgcgccaccatgtccg 107
Query: 651 ggt 653
|||
Sbjct: 106 ggt 104
>gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 3', mRNA sequence
Length = 635
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
|||||||||| ||||||||| |||||||||||||||||||
Sbjct: 136 cgtggcacgacggcttgggccggcgcggcgtcatccagaacca 94
>gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 3', mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
|||||||||| ||||||||| |||||||||||||||||||
Sbjct: 291 cgtggcacgacggcttgggccggcgcggcgtcatccagaacca 249
>gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 5', mRNA sequence
Length = 805
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaacca 603
|||||||||| ||||||||| |||||||||||||||||||
Sbjct: 754 cgtggcacgacggcttgggccggcgcggcgtcatccagaacca 712
>gb|CW412130.1|CW412130 fsbb001f107k02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107k02, DNA
sequence
Length = 602
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 513 ccgcggcgcggtcggtggcgg 533
|||||||||||||||||||||
Sbjct: 573 ccgcggcgcggtcggtggcgg 593
>gb|AI723861.1|AI723861 RHIZ1_28_D10.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 252
Score = 42.1 bits (21), Expect = 0.088
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 262 gagaggcaaacacacgtg-aaggcttgca 289
|||||||||||||||||| ||||||||||
Sbjct: 91 gagaggcaaacacacgtgaaaggcttgca 63
>gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805186, DNA
sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.35
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 594 tccagaaccagatggccgtcttgaaggctaccacgg 629
|||||||||||| ||||||||||| || |||||||
Sbjct: 393 tccagaaccagagcgccgtcttgaacgcgaccacgg 358
>gb|CL191324.1|CL191324 104_410_10906720_114_32533_060 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906720, DNA
sequence
Length = 802
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 590 gtcatccagaaccagatggccgtcttgaaggctaccacggggtc 633
|||||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 123 gtcatccagagccagagcgccgtcttgaatgaaaccacggggtc 80
>gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505475, DNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 590 gtcatccagaaccagatggccgtcttgaaggctaccacggggtc 633
|||||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 350 gtcatccagagccagagcgccgtcttgaatgaaaccacggggtc 393
>gb|CW110423.1|CW110423 104_483_11103696_148_34524_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103696, DNA
sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 590 gtcatccagaaccagatggccgtcttgaaggctaccacggggtc 633
|||||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 131 gtcatccagagccagagcgccgtcttgaatgaaaccacggggtc 174
>gb|CW155340.1|CW155340 104_557_11146087_148_36356_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146087, DNA
sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 518 gcgcggtcggtggcggagggcctc 541
|||||| |||||||||||||||||
Sbjct: 240 gcgcgggcggtggcggagggcctc 263
>gb|CW159279.1|CW159279 104_565_11149276_116_36410_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149276, DNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 590 gtcatccagaaccagatggccgtcttgaaggctaccacggggtc 633
|||||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 511 gtcatccagagccagagcgccgtcttgaatgaaaccacggggtc 554
>gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186715, DNA
sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.35
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 590 gtcatccagaaccagatggccgtcttgaaggctaccacggggtc 633
|||||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 49 gtcatccagagccagagcgccgtcttgaatgaaaccacggggtc 92
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,222
Number of Sequences: 832831
Number of extensions: 231222
Number of successful extensions: 65977
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 65814
Number of HSP's gapped (non-prelim): 165
length of query: 908
length of database: 491,359,669
effective HSP length: 20
effective length of query: 888
effective length of database: 474,703,049
effective search space: 421536307512
effective search space used: 421536307512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)