BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.288
(1775 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF432568.1|CF432568 NIT1_17_A07.g1_A002 Nitrogen-deficie... 1088 0.0
gb|AW565296.1|AW565296 LG1_342_F10.g1_A002 Light Grown 1 (L... 1011 0.0
gb|BG241110.1|BG241110 OV1_38_C11.b1_A002 Ovary 1 (OV1) Sor... 950 0.0
gb|CF758307.1|CF758307 DSAF1_30_B03.g1_A011 Drought-stresse... 914 0.0
gb|BM326140.1|BM326140 PIC1_66_C01.b1_A002 Pathogen-infecte... 829 0.0
gb|CN132813.1|CN132813 OX1_8_H08.b1_A002 Oxidatively-stress... 763 0.0
gb|CD427763.1|CD427763 ETH1_34_C07.b1_A002 Ethylene-treated... 751 0.0
gb|CF432520.1|CF432520 NIT1_17_A07.b1_A002 Nitrogen-deficie... 751 0.0
gb|CF484383.1|CF484383 POL1_25_A12.b1_A002 Pollen Sorghum b... 743 0.0
gb|BG240793.1|BG240793 OV1_38_C11.g1_A002 Ovary 1 (OV1) Sor... 741 0.0
gb|CF484462.1|CF484462 POL1_25_A12.g1_A002 Pollen Sorghum b... 737 0.0
gb|CF758930.1|CF758930 DSAF1_38_C05.g1_A011 Drought-stresse... 682 0.0
gb|AW564120.1|AW564120 LG1_282_F11.b1_A002 Light Grown 1 (L... 670 0.0
gb|BI140933.1|BI140933 IP1_41_A09.b1_A002 Immature pannicle... 595 e-168
gb|AW283936.1|AW283936 LG1_282_F11.g1_A002 Light Grown 1 (L... 581 e-164
gb|BI099355.1|BI099355 IP1_41_A09.g1_A002 Immature pannicle... 571 e-161
gb|CD427852.1|CD427852 ETH1_34_C07.g1_A002 Ethylene-treated... 398 e-109
gb|CW497100.1|CW497100 fsbb001f289k14k0 Sorghum methylation... 367 2e-099
gb|BI075335.1|BI075335 IP1_19_C08.b1_A002 Immature pannicle... 337 2e-090
gb|BI075138.1|BI075138 IP1_19_C08.g1_A002 Immature pannicle... 264 3e-068
gb|BM331444.1|BM331444 PIC1_66_C01.g1_A002 Pathogen-infecte... 214 2e-053
gb|CN132899.1|CN132899 OX1_8_H08.g1_A002 Oxidatively-stress... 155 2e-035
gb|CW497099.1|CW497099 fsbb001f289k14f0 Sorghum methylation... 66 1e-008
gb|CD229420.1|CD229420 CCC1_15_D02.g1_A007 Callus culture/c... 58 3e-006
gb|CW071642.1|CW071642 104_323_10591613_114_30473 Sorghum m... 44 0.044
gb|CW038442.1|CW038442 104_270_10504929_114_30385 Sorghum m... 42 0.17
gb|CW165727.1|CW165727 104_574_11152665_116_36484_043 Sorgh... 42 0.17
gb|CW180665.1|CW180665 104_595_11163074_116_36640_009 Sorgh... 42 0.17
gb|CW180666.1|CW180666 104_595_11163074_148_36644_009 Sorgh... 42 0.17
gb|CW438485.1|CW438485 fsbb001f156c06f0 Sorghum methylation... 42 0.17
gb|CW478451.1|CW478451 fsbb001f236f15f0 Sorghum methylation... 42 0.17
gb|CW489944.1|CW489944 fsbb001f275c11k0 Sorghum methylation... 42 0.17
>gb|CF432568.1|CF432568 NIT1_17_A07.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_17_A07_A002 5', mRNA sequence
Length = 683
Score = 1088 bits (549), Expect = 0.0
Identities = 627/653 (96%)
Strand = Plus / Plus
Query: 165 cggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcggccttcttcggc 224
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 cggctgctggtcctgctggacgacctggccgtgcggtcgtcgcactcggccttcttcggc 89
Query: 225 tcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcg 284
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 90 tcgctccaggcgcgcgggttcgatctcgacttccgcctcgccgacgaccccaagctctcg 149
Query: 285 ctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctccacacca 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 150 ctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctccacccca 209
Query: 345 cgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctgggcatgac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctgggcatgac 269
Query: 405 atgatcctggcggcagattcctctgcctctgatctcattcgtggcattgcaacagagtgt 464
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 270 atgatcctggcggcagattcctctgcctctgatcttattcgtggcatcgcaacagagtgc 329
Query: 465 ggggttgattttgatgaggatccagaggcaatggttattgaccatatgaactatgccgtc 524
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 330 ggggttgattttgatgaggatccagaggcaatggttattgaccacattaactatgccgtc 389
Query: 525 acagatgttgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtg 584
|| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 390 acggatgttgaaggtgatcacaccttgattgctggtgatgatcttatccagtcagatgtg 449
Query: 585 atactagggtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggct 644
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 450 atactggggtctaaaaagattgaggctcctgtattgtttcgaggaattggacacacggct 509
Query: 645 aatccatcaaacagtttggttctgaaggttctatcagcctctccatcagcatattcagct 704
|||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 510 aatccatcaaacggtttggttctgaaagtcctatctgcctctccatcagcatattcagct 569
Query: 705 aatccaaagactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtt 764
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aacccaaagactaagttgtcatctcctccatcgctcactgggtcagctatatcattggtt 629
Query: 765 tcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcga 817
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 630 tcggttatgcaggcaagaaataatgctcgggtgctgatatctggatcactcga 682
>gb|AW565296.1|AW565296 LG1_342_F10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 710
Score = 1011 bits (510), Expect = 0.0
Identities = 637/674 (94%), Gaps = 4/674 (0%)
Strand = Plus / Plus
Query: 909 gagataagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcat 968
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 5 gagacaagcaaatgggttttccatgagagggggcatctaaaggctgttaatgttaagcat 64
Query: 969 cacaaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatac 1028
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cacaaggttggggaggccaatgaaccaggcatgtaccgcattaatgatgacctggaatac 124
Query: 1029 tctgttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtg 1088
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 125 tctgttgagatctatgaatggtccggaacaagctggaagccatatgttgctgatgatgtg 184
Query: 1089 cagcttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaag 1148
|| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 185 caacttcaattttttatgatgagtccttatgttctgaaaactatgtcgactgacaacaag 244
Query: 1149 ggtttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagtt 1208
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 245 ggtttatattcaacatccttcaaagttcctgatgtttatggagttttccagttcaaagtt 304
Query: 1209 gagtaccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtcct 1268
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 305 gagtaccaaagattgggatatactggtctgtcttttacaaagcagattccagtacgccct 364
Query: 1269 tacagacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctca 1328
||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 365 tacaggcataacgagtatgagagattcataacatcagcttacccatactacactgcctca 424
Query: 1329 ttttcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaataaagg 1388
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 425 ttttcaacaatgggtgctttcttcatattctcgcttgtgtacctgtaccacaaataaggg 484
Query: 1389 actcatgggagcgcacaagtctctggaggctgacgtgaccaagatctgtgggcactgaat 1448
|||||||||||| ||||||| |||||||||||| | |||| |||||||| ||||||||||
Sbjct: 485 actcatgggagcacacaagtttctggaggctgatgcgacctagatctgt-ggcactgaat 543
Query: 1449 gttgtgctataagccaagagttacccggcgccaattttatggaaccatgtttttgtactg 1508
| |||||||||||||||| |||||| || | ||||||||||||||||| |||||||| ||
Sbjct: 544 g-tgtgctataagccaagtgttacctggtg-caattttatggaaccatatttttgtagtg 601
Query: 1509 ccaacttagataacatttgacgaccgtgaccgcactcatgggaaatttactcgtgctagg 1568
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 602 ccaacttagataacatttgacgaccgtgaccgcactcatgag-aatttacttgtgctagg 660
Query: 1569 atgttcgatctgcc 1582
||||||||||||||
Sbjct: 661 atgttcgatctgcc 674
>gb|BG241110.1|BG241110 OV1_38_C11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 595
Score = 950 bits (479), Expect = 0.0
Identities = 566/595 (95%)
Strand = Plus / Plus
Query: 621 tttcgaggaattggacacatggctaatccatcaaacagtttggttctgaaggttctatca 680
||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct: 1 tttcgaggaattggacacacggctaatccatcaaacagtttggttctgaaagtcctatct 60
Query: 681 gcctctccatcagcatattcagctaatccaaagactaagttagcgtctcctccatcgctc 740
|||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct: 61 gcctctccatcagcatattcagctaacccaaagactaagttgtcatctcctccatcgctc 120
Query: 741 actgggtcagctatatcattggtttcggttatgcaggcaagaaataatgctcgggtgctg 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actgggtcagctatatcattggtttcggttatgcaggcaagaaataatgctcgggtgctg 180
Query: 801 ttatctggatcactcgatctgtttagcaaccggttcctgaagtctggtgttcaaaaggct 860
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atatctggatcactcgacctgtttagcaaccggttcctgaagtctggtgttcaaaaggct 240
Query: 861 gatagcaaaacaagatatgagagagctggaaacgagcaatttgtggcagagataagcaaa 920
| ||||||||| ||||| ||||| |||||||| |||||||||||| | |||| |||||||
Sbjct: 241 ggtagcaaaacgagatacgagagggctggaaatgagcaatttgtgaccgagacaagcaaa 300
Query: 921 tgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcacaaggttggg 980
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 tgggttttccatgagagggggcatctaaaggctgttaatgttaagcatcacaaggttggg 360
Query: 981 gagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctgttgagatc 1040
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctgttgagatc 420
Query: 1041 tatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaattt 1100
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 421 tatgaatggtccggaacaagctggaagccatatgttgctgatgatgtgcaacttcaattt 480
Query: 1101 ttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgtattca 1160
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 tttatgatgagtccttatgttctgaaaactatgtcgactgacaacaagggtttatattca 540
Query: 1161 acaaccttcaaagttccagatgtttatggagttttccagttcaaagttgagtacc 1215
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 541 acatccttcaaagttcctgatgtttatggagttttccagttcaaagttgagtacc 595
>gb|CF758307.1|CF758307 DSAF1_30_B03.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_30_B03_A011 3', mRNA sequence
Length = 692
Score = 914 bits (461), Expect = 0.0
Identities = 579/613 (94%), Gaps = 4/613 (0%)
Strand = Plus / Plus
Query: 972 aaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactct 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactct 60
Query: 1032 gttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcag 1091
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gttgagatatatgaatggtccggaacaagctggaagccatatgttgctgatgatgtgcaa 120
Query: 1092 cttcaatttttcatgatgagcccttacgttctgaaaactatgtcgactgacaacaagggt 1151
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 cttcagttttttatgatgagtccttatgttctgaaaactatgtcgactgacaacaagggt 180
Query: 1152 ttgtattcaacaaccttcaaagttccagatgtttatggagttttccagttcaaagttgag 1211
|| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 ttatattcaacatccttcaaagttcctgatgtttatggagttttccagttcaaagttgag 240
Query: 1212 taccaaagactgggatatactggtctgtcttttacaaagcagattccagtacgtccttac 1271
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 taccaaagattgggatatactggtctgtcttttacaaagcagattccagtacgcccttac 300
Query: 1272 agacataatgagtatgagagattcataacatcagcgtacccatactacaccgcctcattt 1331
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 aggcataacgagtatgagagattcataacatcagcttacccatactacaccgcctcattt 360
Query: 1332 tcaacaatgggtgctttcttcgtattctcgtttgtgtacctgtaccacaaataaaggact 1391
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 361 tcaacaatgggtgctttctttatattctcgcttgtgtacctgtaccacaaataagggact 420
Query: 1392 catgggagcgcacaagtctctggaggctgacgtgaccaagatctgtgggcactgaatgtt 1451
||||||||| ||||||| |||||||||||| | |||| |||||||| ||||||||||| |
Sbjct: 421 catgggagcacacaagtttctggaggctgatgcgacctagatctgt-ggcactgaatg-t 478
Query: 1452 gtgctataagccaagagttacccggcgccaattttatggaaccatgtttttgtactgcca 1511
||||||||||||||| ||||||| | | ||||||||||||||||| |||||||| |||||
Sbjct: 479 gtgctataagccaagtgttacccagtg-caattttatggaaccatatttttgtagtgcca 537
Query: 1512 acttagataacatttgacgaccgtgaccgcactcatgggaaatttactcgtgctaggatg 1571
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 538 acttagataacatttgacgaccgtgaccgcactcatgag-aatttactcgtgctaggatg 596
Query: 1572 ttcgatctgcccc 1584
|||||||||||||
Sbjct: 597 ttcgatctgcccc 609
>gb|BM326140.1|BM326140 PIC1_66_C01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 829 bits (418), Expect = 0.0
Identities = 475/494 (96%)
Strand = Plus / Plus
Query: 275 caagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcccc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgcccc 60
Query: 335 ctccacaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgc 394
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctccaccccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgc 120
Query: 395 tgggcatgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcattgc 454
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 tgggcatgacatgatcctggcggcagattcctctgcctctgatcttattcgtggcattgc 180
Query: 455 aacagagtgtggggttgattttgatgaggatccagaggcaatggttattgaccatatgaa 514
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 181 aacagagtgcggggttgattttgatgaggatccagaggcaatggttattgaccacattaa 240
Query: 515 ctatgccgtcacagatgttgaaggtgatcacaccttgattgctggtgacgatcttatcca 574
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 ctatgccgtcacggatgttgaaggtgatcacaccttgattgctggtgatgatcttatcca 300
Query: 575 ttcggatgtgatactagggtctgaaaagattgaggctcctgtattgtttcgaggaattgg 634
|| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcagatgtgatactggggtctaaaaagattgaggctcctgtattgtttcgaggaattgg 360
Query: 635 acacatggctaatccatcaaacagtttggttctgaaggttctatcagcctctccatcagc 694
||||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 361 acacacggctaatccatcaaacagtttggttctgaaagtcctatctgcctctccatcagc 420
Query: 695 atattcagctaatccaaagactaagttagcgtctcctccatcgctcactgggtcagctat 754
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 421 atattcagctaacccaaagactaagttgtcatctcctccatcgctcactgggtcagctat 480
Query: 755 atcattggtttcgg 768
||||||||||||||
Sbjct: 481 atcattggtttcgg 494
>gb|CN132813.1|CN132813 OX1_8_H08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_H08_A002 3', mRNA sequence
Length = 624
Score = 763 bits (385), Expect = 0.0
Identities = 500/533 (93%), Gaps = 4/533 (0%)
Strand = Plus / Plus
Query: 1050 tccggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatg 1109
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1 tccggaacaagctggaagccatatgttgctgatgatgtgcaacttcaattttttatgatg 60
Query: 1110 agcccttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttc 1169
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 61 agtccttatgttctgaaaactatgtcgactgacaacaagggtttatattcaacatccttc 120
Query: 1170 aaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatat 1229
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 aaagttcctgatgtttatggagttttccagttcaaagttgagtaccaaagattgggatat 180
Query: 1230 actggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgag 1289
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 181 actggtctgtcttttacaaagcagattccagtacgcccttacaggcataacgagtatgag 240
Query: 1290 agattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttc 1349
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 241 agattcataacatcagcttacccatactacactgcctcattttcaacaatgggtgctttc 300
Query: 1350 ttcgtattctcgtttgtgtacctgtaccacaaataaaggactcatgggagcgcacaagtc 1409
||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 301 ttcatattctcgcttgtgtacctgtaccacaaataagggactcatgggagcacacaagtt 360
Query: 1410 tctggaggctgacgtgaccaagatctgtgggcactgaatgttgtgctataagccaagagt 1469
|||||||||||| | |||| |||||||| ||||||||||| |||||||||||||||| ||
Sbjct: 361 tctggaggctgatgcgacctagatctgt-ggcactgaatg-tgtgctataagccaagtgt 418
Query: 1470 tacccggcgccaattttatggaaccatgtttttgtactgccaacttagataacatttgac 1529
|||| || | ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 419 tacctggtg-caattttatggaaccatatttttgtagtgccaacttagataacatttgac 477
Query: 1530 gaccgtgaccgcactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 478 gaccgtgaccgcactcatgag-aatttacttgtgctaggatgttcgatctgcc 529
Score = 44.1 bits (22), Expect = 0.044
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||| ||||||
Sbjct: 539 cttggatcctttctgatcaacacttgtgaaaacgtctacagt 580
>gb|CD427763.1|CD427763 ETH1_34_C07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_C07_A002 3', mRNA sequence
Length = 610
Score = 751 bits (379), Expect = 0.0
Identities = 503/539 (93%), Gaps = 4/539 (0%)
Strand = Plus / Plus
Query: 1044 gaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttc 1103
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1 gaatggtccggaacaagctggaagccatatgttgctgatgatgtgcaacttcaatttttt 60
Query: 1104 atgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaaca 1163
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 atgatgagtccttatgttctgaaaactatgtcgactgacaacaagggtttatattcaaca 120
Query: 1164 accttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactg 1223
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 121 tccttcaaagttcctgatgtttatggagtttcccagttcaaagttgagtaccaaagattg 180
Query: 1224 ggatatactggtctgtcttttacaaagcagattccagtacgtccttacagacataatgag 1283
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 181 ggatatactggtctgtcttttacaaagcagattccagtacgcccttacaggcataacgag 240
Query: 1284 tatgagagattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggt 1343
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 241 tatgagagattcataacatcagcttacccatactacactgcctcattttcaacaatgggt 300
Query: 1344 gctttcttcgtattctcgtttgtgtacctgtaccacaaataaaggactcatgggagcgca 1403
||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 301 gctttcttcatattctcgcttgggtacctgtaccacaaataagggactcatgggagcaca 360
Query: 1404 caagtctctggaggctgacgtgaccaagatctgtgggcactgaatgttgtgctataagcc 1463
||||| | |||||||||| | |||| |||||||| ||||||||||| |||||||||||||
Sbjct: 361 caagtttttggaggctgatgcgacctagatctgt-ggcactgaatg-tgtgctataagcc 418
Query: 1464 aagagttacccggcgccaattttatggaaccatgtttttgtactgccaacttagataaca 1523
||| |||||| || | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 419 aagtgttacctggtg-caattttatggaaccatatttttgtagtgccaacttagataaca 477
Query: 1524 tttgacgaccgtgaccgcactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 478 tttgacgaccgtgaccgcactcatgag-aatttacttgtgctaggatgttcgatctgcc 535
Score = 44.1 bits (22), Expect = 0.044
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||||| ||||
Sbjct: 545 cttggatcctttctgatcaacacttgtgaaaacgtttccagt 586
>gb|CF432520.1|CF432520 NIT1_17_A07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA
clone NIT1_17_A07_A002 3', mRNA sequence
Length = 611
Score = 751 bits (379), Expect = 0.0
Identities = 501/535 (93%), Gaps = 5/535 (0%)
Strand = Plus / Plus
Query: 1049 gtccggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgat 1108
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct: 1 gtccggaacaagctggaagccatatgttgctgatgatgtgcaacttcaattttttatgat 60
Query: 1109 gagcccttacgttctgaaaactatgtcgactgacaacaa-gggtttgtattcaacaacct 1167
||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct: 61 gagtccttatgttctgaaaactatgtcgactgacaacaangggtttatattcaacatcct 120
Query: 1168 tcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggat 1227
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 tcaaagttcctgatgtttatggagttttccagttcaaagttgagtaccaaagattgggat 180
Query: 1228 atactggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatg 1287
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 181 atactggtctgtcttttacaaagcagattccagtacgcccttacaggcataacgagtatg 240
Query: 1288 agagattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctt 1347
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 agagattcataacatcagcttacccatactacactgcctcattttcaacaatgggtgctt 300
Query: 1348 tcttcgtattctcgtttgtgtacctgtaccacaaataaaggactcatgggagcgcacaag 1407
||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 301 tcttcatattctcgcttgtgtacctgtaccacaaataagggactcatgggagcacacaag 360
Query: 1408 tctctggaggctgacgtgaccaagatctgtgggcactgaatgttgtgctataagccaaga 1467
| |||||||||||| | |||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 361 tttctggaggctgatgcgacctagatctgt-ggcactgaatg-tgtgctataagccaagt 418
Query: 1468 gttacccggcgccaattttatggaaccatgtttttgtactgccaacttagataacatttg 1527
|||||| || | ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 419 gttacctggtg-caattttatggaaccatatttttgtagtgccaacttagataacatttg 477
Query: 1528 acgaccgtgaccgcactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 478 acgaccgtgaccgcactcatgag-aatttacttgtgctaggatgttcgatctgcc 531
Score = 44.1 bits (22), Expect = 0.044
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||| ||||||
Sbjct: 541 cttggatcctttctgatcaacacttgtgaaaacgtctacagt 582
>gb|CF484383.1|CF484383 POL1_25_A12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_A12_A002 3', mRNA sequence
Length = 619
Score = 743 bits (375), Expect = 0.0
Identities = 502/539 (93%), Gaps = 4/539 (0%)
Strand = Plus / Plus
Query: 1044 gaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagcttcaatttttc 1103
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1 gaatggtccggaacaagctggaagccatatgttgctgatgatgtgcaacttcaatttttt 60
Query: 1104 atgatgagcccttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaaca 1163
|||| ||| ||||| ||| |||||||||||| |||||||||||||||||| |||||||||
Sbjct: 61 atgaggagtccttatgttttgaaaactatgtggactgacaacaagggtttatattcaaca 120
Query: 1164 accttcaaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactg 1223
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 tccttcaaagttcctgatgtttatggagttttccagttcaaagttgagtaccaaagattg 180
Query: 1224 ggatatactggtctgtcttttacaaagcagattccagtacgtccttacagacataatgag 1283
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 181 ggatatactggtctgtcttttacaaagcagattccagtacgcccttacaggcataacgag 240
Query: 1284 tatgagagattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggt 1343
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 241 tatgagagattcataacatcagcttacccatactacactgcctcattttcaacaatgggt 300
Query: 1344 gctttcttcgtattctcgtttgtgtacctgtaccacaaataaaggactcatgggagcgca 1403
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 301 gctttcttcatattctcgcttgtgtacctgtaccacaaataagggactcatgggagcaca 360
Query: 1404 caagtctctggaggctgacgtgaccaagatctgtgggcactgaatgttgtgctataagcc 1463
||||| | |||||||||| | |||| |||||||| ||||||||||| |||||||||||||
Sbjct: 361 caagtttttggaggctgatgcgacctagatctgt-ggcactgaatg-tgtgctataagcc 418
Query: 1464 aagagttacccggcgccaattttatggaaccatgtttttgtactgccaacttagataaca 1523
||| |||||| || | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 419 aagtgttacctggtg-caattttatggaaccatatttttgtagtgccaacttagataaca 477
Query: 1524 tttgacgaccgtgaccgcactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 478 tttgacgaccgtgaccgcactcatgag-aatttacttgtgctaggatgttcgatctgcc 535
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||||||||||
Sbjct: 545 cttggatcctttctgatcaacacttgtgaaaacgtttacagt 586
>gb|BG240793.1|BG240793 OV1_38_C11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 574
Score = 741 bits (374), Expect = 0.0
Identities = 489/522 (93%), Gaps = 4/522 (0%)
Strand = Plus / Plus
Query: 1061 ctggaagccgtatgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgt 1120
||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 1 ctggaagccatatgttgctgatgatgtgcaacttcaattttttatgatgagtccttatgt 60
Query: 1121 tctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaagttccaga 1180
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct: 61 tctgaaaactatgtcgactgacaacaagggtttatattcaacatccttcaaagttcctga 120
Query: 1181 tgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctgtc 1240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 tgtttatggagttttccagttcaaagttgagtaccaaagattgggatatactggtctgtc 180
Query: 1241 ttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcataac 1300
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 181 ttttacaaagcagattccagtacgcccttacaggcataacgagtatgagagattcataac 240
Query: 1301 atcagcgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattctc 1360
|||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 241 atcagcttacccatactacactgcctcattttcaacaatgggtgctttcttcatattctc 300
Query: 1361 gtttgtgtacctgtaccacaaataaaggactcatgggagcgcacaagtctctggaggctg 1420
| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 301 gcttgtgtacctgtaccacaaataagggactcatgggagcacacaagtttctggaggctg 360
Query: 1421 acgtgaccaagatctgtgggcactgaatgttgtgctataagccaagagttacccggcgcc 1480
| | |||| |||||||| ||||||||||| |||||||||||||||| |||||| || | |
Sbjct: 361 atgcgacctagatctgt-ggcactgaatg-tgtgctataagccaagtgttacctggtg-c 417
Query: 1481 aattttatggaaccatgtttttgtactgccaacttagataacatttgacgaccgtgaccg 1540
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 418 aattttatggaaccatatttttgtagtgccaacttagataacatttgacgaccgtgaccg 477
Query: 1541 cactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
|||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 478 cactcatgag-aatttacttgtgctaggatgttcgatctgcc 518
>gb|CF484462.1|CF484462 POL1_25_A12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_A12_A002 5', mRNA sequence
Length = 466
Score = 737 bits (372), Expect = 0.0
Identities = 435/456 (95%)
Strand = Plus / Plus
Query: 406 tgatcctggcggcagattcctctgcctctgatctcattcgtggcattgcaacagagtgtg 465
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 9 tgatcctggcggcagattcctctgcctctgatcttattcgtggcattgcaacagagtgcg 68
Query: 466 gggttgattttgatgaggatccagaggcaatggttattgaccatatgaactatgccgtca 525
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 69 gggttgattttgatgaggatccagaggcaatggttattgaccacattaactatgccgtca 128
Query: 526 cagatgttgaaggtgatcacaccttgattgctggtgacgatcttatccattcggatgtga 585
| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 129 cggatgttgaaggtgatcacaccttgattgctggtgatgatcttatccagtcagatgtga 188
Query: 586 tactagggtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggcta 645
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 189 tactggggtctaaaaagattgaggctcctgtattgtttcgaggaattggacacacggcta 248
Query: 646 atccatcaaacagtttggttctgaaggttctatcagcctctccatcagcatattcagcta 705
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 249 atccatcaaacagtttggttctgaaagtcctatctgcctctccatcagcatattcagcta 308
Query: 706 atccaaagactaagttagcgtctcctccatcgctcactgggtcagctatatcattggttt 765
| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acccaaagactaagttgtcatctcctccatcgctcactgggtcagctatatcattggttt 368
Query: 766 cggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgttta 825
||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct: 369 cggttatgcaggcaagaaatagtgctcgggtgctgatatctggatcactcgacctgttta 428
Query: 826 gcaaccggttcctgaagtctggtgttcaaaaggctg 861
||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcaaccggttcctgaagtctggtgttcaaaaggctg 464
>gb|CF758930.1|CF758930 DSAF1_38_C05.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_38_C05_A011 3', mRNA sequence
Length = 554
Score = 682 bits (344), Expect = 0.0
Identities = 444/472 (94%), Gaps = 4/472 (0%)
Strand = Plus / Plus
Query: 1113 ccttacgttctgaaaactatgtcgactgacaacaagggtttgtattcaacaaccttcaaa 1172
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 4 ccttatgttctgaaaactatgtcgactgacaacaagggtttatattcaacatccttcaaa 63
Query: 1173 gttccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatact 1232
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 64 gttcctgatgtttatggagttttccagttcaaagttgagtaccaaagattgggatatact 123
Query: 1233 ggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgagaga 1292
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 124 ggtctgtcttttacaaagcagattccagtacgcccttacaggcataacgagtatgagaga 183
Query: 1293 ttcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttcttc 1352
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttcataacatcagcttacccatactacaccgcctcattttcaacaatgggtgctttcttt 243
Query: 1353 gtattctcgtttgtgtacctgtaccacaaataaaggactcatgggagcgcacaagtctct 1412
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 244 atattctcgcttgtgtacctgtaccacaaataagggactcatgggagcacacaagtttct 303
Query: 1413 ggaggctgacgtgaccaagatctgtgggcactgaatgttgtgctataagccaagagttac 1472
||||||||| | |||| |||||||| ||||||||||| |||||||||||||||| |||||
Sbjct: 304 ggaggctgatgcgacctagatctgt-ggcactgaatg-tgtgctataagccaagtgttac 361
Query: 1473 ccggcgccaattttatggaaccatgtttttgtactgccaacttagataacatttgacgac 1532
|| | | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 362 ccagtg-caattttatggaaccatatttttgtagtgccaacttagataacatttgacgac 420
Query: 1533 cgtgaccgcactcatgggaaatttactcgtgctaggatgttcgatctgcccc 1584
|||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 421 cgtgaccgcactcatgag-aatttactcgtgctaggatgttcgatctgcccc 471
>gb|AW564120.1|AW564120 LG1_282_F11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 670 bits (338), Expect = 0.0
Identities = 422/450 (93%), Gaps = 15/450 (3%)
Strand = Plus / Plus
Query: 45 cacgagatctgcgcagca---atggcgacgcggcgccacgtcctgctcctcctcgccgcc 101
|||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 44 cacgagatctgcgcagcagcaatggcgacgcggcgccacgtcctcctcctc--------- 94
Query: 102 gcctttgcgtccctcctcgcgctcgc---ggccgcggaaggggacgaagaggggccccgc 158
||||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct: 95 gccttcgcgaccctcctcgcgctcgccgcggccgcggagggggccgaagaggggccccgc 154
Query: 159 gggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcggccttc 218
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gggcggcggctgctggtcctgctggacgacctggccgtgcggtcgtcgcactcggccttc 214
Query: 219 ttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgatcccaag 278
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 215 ttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgccgacgaccccaag 274
Query: 279 ctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctcc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctcc 334
Query: 339 acaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctggg 398
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 accccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctggg 394
Query: 399 catgacatgatcctggcggcagattcctctgcctctgatctcattcgtggcattgcaaca 458
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 395 catgacatgatcctggcggcagattcctctgcctctgatcttattcgtggcattgcaaca 454
Query: 459 gagtgtggggttgattttgatgaggatcca 488
||||| ||||||||||||||||||||||||
Sbjct: 455 gagtgcggggttgattttgatgaggatcca 484
>gb|BI140933.1|BI140933 IP1_41_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 447
Score = 595 bits (300), Expect = e-168
Identities = 384/412 (93%), Gaps = 15/412 (3%)
Strand = Plus / Plus
Query: 45 cacgagatctgcgcagca---atggcgacgcggcgccacgtcctgctcctcctcgccgcc 101
|||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 45 cacgagatctgcgcagcagcaatggcgacgcggcgccacgtcctcctcctc--------- 95
Query: 102 gcctttgcgtccctcctcgcgctcgc---ggccgcggaaggggacgaagaggggccccgc 158
||||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct: 96 gccttcgcgaccctcctcgcgctcgccgcggccgcggagggggccgaagaggggccccgc 155
Query: 159 gggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcggccttc 218
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gggcggcggctgctggtcctgctggacgacctggccgtgcggtcgtcgcactcggccttc 215
Query: 219 ttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgatcccaag 278
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 216 ttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgccgacgaccccaag 275
Query: 279 ctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctcc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctcc 335
Query: 339 acaccacgttttggtggatcagtggaccagaacgcagtcctcgaatttattgatgctggg 398
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 336 accccacgttttggtggatcagtggaccagaacgcagtcctcggatttattgatgctggg 395
Query: 399 catgacatgatcctggcggcagattcctctgcctctgatctcattcgtggca 450
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 396 catgacatgatcctggcggcagattcctctgcctctgatcttattcgtggca 447
>gb|AW283936.1|AW283936 LG1_282_F11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 581 bits (293), Expect = e-164
Identities = 387/413 (93%), Gaps = 4/413 (0%)
Strand = Plus / Plus
Query: 1170 aaagttccagatgtttatggagttttccagttcaaagttgagtaccaaagactgggatat 1229
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aaagttcctgatgtttatggagttttccagttcaaagttgagtaccaaagattgggatat 60
Query: 1230 actggtctgtcttttacaaagcagattccagtacgtccttacagacataatgagtatgag 1289
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 61 actggtctgtcttttacaaagcagattccagtacgcccttacaggcataacgagtatgag 120
Query: 1290 agattcataacatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttc 1349
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 agattcataacatcagcttacccatactacactgcctcattttcaacaatgggtgctttc 180
Query: 1350 ttcgtattctcgtttgtgtacctgtaccacaaataaaggactcatgggagcgcacaagtc 1409
||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 181 ttcatattctcgcttgtgtacctgtaccacaaataagggactcatgggagcacacaagtt 240
Query: 1410 tctggaggctgacgtgaccaagatctgtgggcactgaatgttgtgctataagccaagagt 1469
|||||||||||| | |||| |||||||| ||||||||||| |||||||||||||||| ||
Sbjct: 241 tctggaggctgatgcgacctagatctgt-ggcactgaatg-tgtgctataagccaagtgt 298
Query: 1470 tacccggcgccaattttatggaaccatgtttttgtactgccaacttagataacatttgac 1529
|||| || | ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 299 tacctggtg-caattttatggaaccatatttttgtagtgccaacttagataacatttgac 357
Query: 1530 gaccgtgaccgcactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 358 gaccgtgaccgcactcatgag-aatttacttgtgctaggatgttcgatctgcc 409
Score = 44.1 bits (22), Expect = 0.044
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||| ||||||
Sbjct: 419 cttggatcctttctgatcaacacttgtgaaaacgtctacagt 460
>gb|BI099355.1|BI099355 IP1_41_A09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 529
Score = 571 bits (288), Expect = e-161
Identities = 379/404 (93%), Gaps = 4/404 (0%)
Strand = Plus / Plus
Query: 1179 gatgtttatggagttttccagttcaaagttgagtaccaaagactgggatatactggtctg 1238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 gatgtttatggagttttccagttcaaagttgagtaccaaagattgggatatactggtctg 63
Query: 1239 tcttttacaaagcagattccagtacgtccttacagacataatgagtatgagagattcata 1298
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 64 tcttttacaaagcagattccagtacgcccttacaggcataacgagtatgagagattcata 123
Query: 1299 acatcagcgtacccatactacaccgcctcattttcaacaatgggtgctttcttcgtattc 1358
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 124 acatcagcttacccatactacactgcctcattttcaacaatgggtgctttcttcatattc 183
Query: 1359 tcgtttgtgtacctgtaccacaaataaaggactcatgggagcgcacaagtctctggaggc 1418
||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct: 184 tcgcttgtgtacctgtaccacaaataagggactcatgggagcacacaagtttctggaggc 243
Query: 1419 tgacgtgaccaagatctgtgggcactgaatgttgtgctataagccaagagttacccggcg 1478
||| | |||| |||||||| ||||||||||| |||||||||||||||| |||||| || |
Sbjct: 244 tgatgcgacctagatctgt-ggcactgaatg-tgtgctataagccaagtgttacctggtg 301
Query: 1479 ccaattttatggaaccatgtttttgtactgccaacttagataacatttgacgaccgtgac 1538
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 302 -caattttatggaaccatatttttgtagtgccaacttagataacatttgacgaccgtgac 360
Query: 1539 cgcactcatgggaaatttactcgtgctaggatgttcgatctgcc 1582
|||||||||| | |||||||| ||||||||||||||||||||||
Sbjct: 361 cgcactcatgag-aatttacttgtgctaggatgttcgatctgcc 403
Score = 44.1 bits (22), Expect = 0.044
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||| ||||||
Sbjct: 413 cttggatcctttctgatcaacacttgtgaaaacgtctacagt 454
>gb|CD427852.1|CD427852 ETH1_34_C07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_C07_A002 5', mRNA sequence
Length = 334
Score = 398 bits (201), Expect = e-109
Identities = 292/321 (90%), Gaps = 16/321 (4%)
Strand = Plus / Plus
Query: 45 cacgagatctgcgcagca---atggcgacgcggcgccacgtcctgctcctcctcgccgcc 101
|||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 24 cacgagatctgcgcagcagcaatggcgacgcggcgccacgtcctcctcctc--------- 74
Query: 102 gcctttgcgtccctcctcgcgctcgc---ggccgcggaaggggacgaagaggggccccgc 158
||||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct: 75 gccttcgcgaccctcctcgcgctcgccgcggccgcggagggggccgaagaggggccccgc 134
Query: 159 gggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgcactcggccttc 218
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gggcggcggctgctggtcctgctggacgacctggccgtgcggtcgtcgcactcggccttc 194
Query: 219 ttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgctgacgatcccaag 278
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 195 ttcggctcgctccaggcgcgcgggttcgatctcgacttccgcctcgccgacgaccccaag 254
Query: 279 ctctcgctccaccgctacggccagtacctctacgacggcctcgtgctcttcgccccctcc 338
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 255 ctctcgctccaccgctacggccagtacctctacgacgg-ctctcgctcttcgccccctcc 313
Query: 339 acaccacgttttggtggatca 359
|| ||||||||||||||||||
Sbjct: 314 accccacgttttggtggatca 334
>gb|CW497100.1|CW497100 fsbb001f289k14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k14, DNA
sequence
Length = 642
Score = 367 bits (185), Expect = 2e-099
Identities = 209/217 (96%)
Strand = Plus / Minus
Query: 131 cgcggaaggggacgaagaggggccccgcgggcgccggctgctcgtcctcctggacgacct 190
|||||| |||| ||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 642 cgcggagggggccgaagaggggccccgcgggcggcggctgctggtcctgctggacgacct 583
Query: 191 ggccgtgcggtcgtcgcactcggccttcttcggctcgctccaggcgcgcgggttcgatct 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggccgtgcggtcgtcgcactcggccttcttcggctcgctccaggcgcgcgggttcgatct 523
Query: 251 cgacttccgcctcgctgacgatcccaagctctcgctccaccgctacggccagtacctcta 310
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cgacttccgcctcgccgacgaccccaagctctcgctccaccgctacggccagtacctcta 463
Query: 311 cgacggcctcgtgctcttcgccccctccacaccacgt 347
|||||||||||||||||||||||||||||| ||||||
Sbjct: 462 cgacggcctcgtgctcttcgccccctccaccccacgt 426
>gb|BI075335.1|BI075335 IP1_19_C08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 337 bits (170), Expect = 2e-090
Identities = 200/210 (95%)
Strand = Plus / Plus
Query: 662 ggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaagactaagtt 721
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 27 ggttctgaaagtcctatctgcctctccatcagcatattcagctaacccaaagactaagtt 86
Query: 722 agcgtctcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaag 781
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 gtcatctcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaag 146
Query: 782 aaataatgctcgggtgctgttatctggatcactcgatctgtttagcaaccggttcctgaa 841
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 147 aaataatgctcgggtgctgatatctggatcactcgacctgtttagcaaccggttcctgaa 206
Query: 842 gtctggtgttcaaaaggctgatagcaaaac 871
|||||||||||||||||||| |||||||||
Sbjct: 207 gtctggtgttcaaaaggctggtagcaaaac 236
>gb|BI075138.1|BI075138 IP1_19_C08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 502
Score = 264 bits (133), Expect = 3e-068
Identities = 200/217 (92%), Gaps = 4/217 (1%)
Strand = Plus / Plus
Query: 1366 tgtacctgtaccacaaataaaggactcatgggagcgcacaagtctctggaggctgacgtg 1425
|||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| | |
Sbjct: 1 tgtacctgtaccacaaataagggactcatgggagcacacaagtttctggaggctgatgcg 60
Query: 1426 accaagatctgtgggcactgaatgttgtgctataagccaagagttacccggcgccaattt 1485
||| |||||||||| |||||||||| ||||||||||||||| |||||| || || |||||
Sbjct: 61 acctagatctgtgg-cactgaatgt-gtgctataagccaagtgttacctggtgc-aattt 117
Query: 1486 tatggaaccatgtttttgtactgccaacttagataacatttgacgaccgtgaccgcactc 1545
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tatggaaccatatttttgtagtgccaacttagataacatttgacgaccgtgaccgcactc 177
Query: 1546 atgggaaatttactcgtgctaggatgttcgatctgcc 1582
||| | |||||||| ||||||||||||||||||||||
Sbjct: 178 atgag-aatttacttgtgctaggatgttcgatctgcc 213
Score = 44.1 bits (22), Expect = 0.044
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1599 cttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
|||||| |||||||||||| ||||||| | ||||| ||||||
Sbjct: 223 cttggatcctttctgatcaacacttgtgaaaacgtctacagt 264
>gb|BM331444.1|BM331444 PIC1_66_C01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 287
Score = 214 bits (108), Expect = 2e-053
Identities = 184/204 (90%), Gaps = 4/204 (1%)
Strand = Plus / Plus
Query: 1379 caaataaaggactcatgggagcgcacaagtctctggaggctgacgtgaccaagatctgtg 1438
||||||| |||||||||||||| ||||||| | |||||||||| | |||| |||| ||||
Sbjct: 3 caaataagggactcatgggagcacacaagtttttggaggctgatgggacctagatttgtg 62
Query: 1439 ggcactgaatgttgtgctataagccaagagttacccggcgccaattttatggaaccatgt 1498
| |||||||||| ||||||||||||||| |||||| || || |||||||||||||||| |
Sbjct: 63 g-cactgaatgt-gtgctataagccaagtgttacctggtgc-aattttatggaaccatat 119
Query: 1499 ttttgtactgccaacttagataacatttgacgaccgtgaccgcactcatgggaaatttac 1558
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 120 ttttgtagtgccaacttagataacatttgacgaccgtgaccgcactcatgag-aatttac 178
Query: 1559 tcgtgctaggatgttcgatctgcc 1582
| ||||||||||||||||| ||||
Sbjct: 179 ttgtgctaggatgttcgatttgcc 202
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1600 ttggaccctttctgatcagcacttgtcagaacgtttacagt 1640
||||| ||||| |||||| ||||||| | ||||||||||||
Sbjct: 213 ttggatcctttttgatcaacacttgtgaaaacgtttacagt 253
>gb|CN132899.1|CN132899 OX1_8_H08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_H08_A002 5', mRNA sequence
Length = 189
Score = 155 bits (78), Expect = 2e-035
Identities = 147/170 (86%), Gaps = 15/170 (8%)
Strand = Plus / Plus
Query: 45 cacgagatctgcgcagca---atggcgacgcggcgccacgtcctgctcctcctcgccgcc 101
|||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 29 cacgagatctgcgcagcagcaatggcgacgcggcgccacgtcctcctcctc--------- 79
Query: 102 gcctttgcgtccctcctcgcgctcgc---ggccgcggaaggggacgaagaggggccccgc 158
||||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct: 80 gccttcgcgaccctcctcgcgctcgccgcggccgcggagggggccgaagaggggccccgc 139
Query: 159 gggcgccggctgctcgtcctcctggacgacctggccgtgcggtcgtcgca 208
||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 140 gggcggcggctgctggtcctgctggacgacctggccgtgcggtcgtcgca 189
>gb|CW497099.1|CW497099 fsbb001f289k14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k14, DNA
sequence
Length = 706
Score = 65.9 bits (33), Expect = 1e-008
Identities = 47/51 (92%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 45 cacgagatctgcgcagc---aatggcgacgcggcgccacgtcctgctcctc 92
||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 629 cacgagatctgcgcagcagcaatggcgacgcggcgccacgtcctcctcctc 679
>gb|CD229420.1|CD229420 CCC1_15_D02.g1_A007 Callus culture/cell suspension Sorghum
bicolor cDNA clone CCC1_15_D02_A007 5', mRNA sequence
Length = 136
Score = 58.0 bits (29), Expect = 3e-006
Identities = 46/51 (90%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 45 cacgagatctgcgcagca---atggcgacgcggcgccacgtcctgctcctc 92
|||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 44 cacgagatctgcgcagcagcaatggcgacgcggcgccacggcctcctcctc 94
>gb|CW071642.1|CW071642 104_323_10591613_114_30473 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591613, DNA
sequence
Length = 340
Score = 44.1 bits (22), Expect = 0.044
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 cctgctcctcctcgccgccgcc 104
||||||||||||||||||||||
Sbjct: 78 cctgctcctcctcgccgccgcc 99
>gb|CW038442.1|CW038442 104_270_10504929_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504929, DNA
sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 ctgctcctcctcgccgccgcc 104
|||||||||||||||||||||
Sbjct: 90 ctgctcctcctcgccgccgcc 110
>gb|CW165727.1|CW165727 104_574_11152665_116_36484_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152665, DNA
sequence
Length = 552
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 80 cgtcctgctcctcctcgccgccgcc 104
||||||||||||| |||||||||||
Sbjct: 426 cgtcctgctcctcgtcgccgccgcc 402
>gb|CW180665.1|CW180665 104_595_11163074_116_36640_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163074, DNA
sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 cgtcctgctcctcctcgccgccgcc 104
||||||||||||| |||||||||||
Sbjct: 131 cgtcctgctcctcgtcgccgccgcc 155
>gb|CW180666.1|CW180666 104_595_11163074_148_36644_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163074, DNA
sequence
Length = 702
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 80 cgtcctgctcctcctcgccgccgcc 104
||||||||||||| |||||||||||
Sbjct: 593 cgtcctgctcctcgtcgccgccgcc 569
>gb|CW438485.1|CW438485 fsbb001f156c06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156c06, DNA
sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 80 cgtcctgctcctcctcgccgccgcc 104
||||||||||||| |||||||||||
Sbjct: 613 cgtcctgctcctcgtcgccgccgcc 589
>gb|CW478451.1|CW478451 fsbb001f236f15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236f15, DNA
sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 80 cgtcctgctcctcctcgccgccgcc 104
||||||||||||| |||||||||||
Sbjct: 549 cgtcctgctcctcgtcgccgccgcc 525
>gb|CW489944.1|CW489944 fsbb001f275c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275c11, DNA
sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 84 ctgctcctcctcgccgccgcc 104
|||||||||||||||||||||
Sbjct: 324 ctgctcctcctcgccgccgcc 344
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 465,835
Number of Sequences: 832831
Number of extensions: 465835
Number of successful extensions: 132442
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132316
Number of HSP's gapped (non-prelim): 66
length of query: 1775
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1755
effective length of database: 474,703,049
effective search space: 833103850995
effective search space used: 833103850995
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)