BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI098405.1|BI098405 IP1_31_H10.b1_A002 Immature pannicle... 787 0.0
gb|AW678969.1|AW678969 WS1_21_C08.g1_A002 Water-stressed 1 ... 595 e-168
gb|CF481814.1|CF481814 POL1_74_G07.b1_A002 Pollen Sorghum b... 561 e-158
gb|BI098093.1|BI098093 IP1_31_H10.g1_A002 Immature pannicle... 482 e-134
gb|AW678890.1|AW678890 WS1_21_C08.b1_A002 Water-stressed 1 ... 333 2e-089
gb|CW265206.1|CW265206 104_734_11231737_148_35263_009 Sorgh... 272 5e-071
gb|CW210896.1|CW210896 104_641_11190029_116_37005_023 Sorgh... 194 1e-047
gb|CW409159.1|CW409159 fsbb001f103f18f0 Sorghum methylation... 194 1e-047
gb|CW388513.1|CW388513 fsbb001f073e22k0 Sorghum methylation... 178 6e-043
gb|CW314354.1|CW314354 104_805_11471786_116_35818_015 Sorgh... 176 2e-042
gb|CW388512.1|CW388512 fsbb001f073e22f0 Sorghum methylation... 151 1e-034
gb|CW265205.1|CW265205 104_734_11231737_116_35259_009 Sorgh... 143 3e-032
gb|CW104118.1|CW104118 104_473_11012257_148_34438_013 Sorgh... 74 2e-011
gb|CW272731.1|CW272731 104_745_11403535_148_35360_032 Sorgh... 70 4e-010
gb|CW271328.1|CW271328 104_743_11402940_116_35339_040 Sorgh... 44 0.022
gb|CW195881.1|CW195881 104_619_11180870_116_36808_053 Sorgh... 42 0.085
gb|CW195882.1|CW195882 104_619_11180870_148_36804_053 Sorgh... 42 0.085
gb|AW744937.1|AW744937 LG1_384_B01.b1_A002 Light Grown 1 (L... 42 0.085
gb|BZ366834.1|BZ366834 ic99f06.b1 WGS-SbicolorF (JM107 adap... 40 0.34
gb|CL157930.1|CL157930 104_346_10803177_116_31376_153 Sorgh... 40 0.34
gb|CW089741.1|CW089741 104_435_10948883_114_32596_044 Sorgh... 40 0.34
gb|CW135554.1|CW135554 104_520_11117911_148_34832_028 Sorgh... 40 0.34
gb|CW164613.1|CW164613 104_572_11152078_116_36468_085 Sorgh... 40 0.34
gb|CW176000.1|CW176000 104_588_11158254_116_36581_019 Sorgh... 40 0.34
gb|CW226474.1|CW226474 104_664_11204904_116_37218_088 Sorgh... 40 0.34
gb|CW253395.1|CW253395 104_717_11225062_148_35107_095 Sorgh... 40 0.34
gb|CW271086.1|CW271086 104_743_11402803_148_35342_078 Sorgh... 40 0.34
gb|CW364838.1|CW364838 fsbb001f037b03k0 Sorghum methylation... 40 0.34
gb|CW381990.1|CW381990 fsbb001f063k11f0 Sorghum methylation... 40 0.34
gb|CW433355.1|CW433355 fsbb001f148i15f0 Sorghum methylation... 40 0.34
gb|CW501966.1|CW501966 fsbb001f298b02k0 Sorghum methylation... 40 0.34
gb|BE355813.1|BE355813 DG1_11_F07.b1_A002 Dark Grown 1 (DG1... 40 0.34
gb|BE358311.1|BE358311 DG1_29_A08.b1_A002 Dark Grown 1 (DG1... 40 0.34
gb|BE361444.1|BE361444 DG1_72_D04.b1_A002 Dark Grown 1 (DG1... 40 0.34
gb|BG240406.1|BG240406 OV1_29_F07.b1_A002 Ovary 1 (OV1) Sor... 40 0.34
gb|CF483081.1|CF483081 POL1_11_D11.b1_A002 Pollen Sorghum b... 40 0.34
>gb|BI098405.1|BI098405 IP1_31_H10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 787 bits (397), Expect = 0.0
Identities = 465/487 (95%), Gaps = 3/487 (0%)
Strand = Plus / Minus
Query: 358 gattctcagataatgtggtcctcagaacattgcagatgtagcctcagcgacttccgttac 417
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 531 gattctcagataatatggtcctcagaacattgcagacgtagcctcagcaacttccgttac 472
Query: 418 aacttggtcatagtccgacttcagtttatccttcacctctccactgagctcccccttgtt 477
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 471 aacttggtcatagtctgacttcagtttatccttcacctcttcactgagctcccccttggt 412
Query: 478 tggtttggtcagaaccaagacgcaacaagtcggcctcttagtggttcctgcggtcgcaag 537
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 411 tggtttggtcagaaccaagacgcaacaagtcggcctctttgtggttcctgcagtcgcaag 352
Query: 538 atcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaac 597
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 351 atcctcttttgatggaacatatatgtaaggaacattagcttcctcacatagtataggaac 292
Query: 598 atgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatcctttgttccc 657
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 291 atgtgtaatcacatcaataggagaaacatttccagcaatcacacacaaccctttgttccc 232
Query: 658 gcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttcgcctcggaggc 717
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 231 gcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttggcctcagaggc 172
Query: 718 tcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgat 777
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 171 tcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgat 112
Query: 778 ggacatcagcgccaccgagg---ccttcttctccgtctccgtgtcgctccccatcgccgc 834
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 111 gggcatcagcgccaccggggtcttcttcttctccgtctccgtgtcgctccccatcgccgc 52
Query: 835 cgccgcc 841
|||||||
Sbjct: 51 cgccgcc 45
>gb|AW678969.1|AW678969 WS1_21_C08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 530
Score = 595 bits (300), Expect = e-168
Identities = 351/368 (95%)
Strand = Plus / Minus
Query: 321 atactacaccaagaaagacgtgcacagggaattgccggattctcagataatgtggtcctc 380
|||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||
Sbjct: 368 atactacaccaagaaagatgtgcacatggagttgcctgattctcagataatatggtcctc 309
Query: 381 agaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgacttca 440
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 308 agaacattgcagacgtagcctcagcaacttccgttacaacttggtcatagtctgacttca 249
Query: 441 gtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagacgc 500
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 248 gtttatccttcacctcttcactgagctcccccttggttggtttggtcagaaccaagacgc 189
Query: 501 aacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatata 560
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 188 aacaagtcggcctctttgtggttcctgcagtcgcaagatcctcttttgatggaacatata 129
Query: 561 cgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaataggag 620
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 128 tgtaaggaacattagcttcctcacatagtataggaacatgtgtaatcacatcaataggag 69
Query: 621 aaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacct 680
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 68 aaacatttccagcaatcacacacaaccctttgttcccgcggcgaatgctcttgactacct 9
Query: 681 ctttgact 688
||||||||
Sbjct: 8 ctttgact 1
Score = 65.9 bits (33), Expect = 6e-009
Identities = 75/87 (86%), Gaps = 4/87 (4%)
Strand = Plus / Minus
Query: 219 cgccaacaaggatggtccatagcatataggtaaactcata--gtcatatctcgctccagc 276
||||||||||||| ||||||| || ||||||||||||| |||||||| ||||||||
Sbjct: 492 cgccaacaaggatagtccataatatgcaggtaaactcatatagtcatatc--gctccagc 435
Query: 277 caccgtgcaaaacatattggttcggtt 303
|||| ||||||||||| |||| |||||
Sbjct: 434 caccatgcaaaacatactggtgcggtt 408
>gb|CF481814.1|CF481814 POL1_74_G07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_74_G07_A002 3', mRNA sequence
Length = 728
Score = 561 bits (283), Expect = e-158
Identities = 348/367 (94%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 321 atactacaccaagaaagacgtgcacagggaattgccggattctcagataatgtggtcctc 380
|||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||
Sbjct: 367 atactacaccaagaaagatgtgcacatggagttgcctgattctcagataatatggtcctc 308
Query: 381 agaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgacttca 440
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 307 agaacattgcagacgtagcctcagcaacttccgttacaacttggtcatagtctgacttca 248
Query: 441 gtttatccttcacctctccactgagctccccc-ttgtttggtttggtcagaaccaagacg 499
||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 247 gtttatccttcacctcttcactgagctcccccnttggttggtttggtcagaaccaagacg 188
Query: 500 caacaagtcggcct-cttagtggttcctgcggtcgcaagatcctcttttgatggaacata 558
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 187 caacaagtcggccttctttgtggttcctgcagtcgcaagatcctcttttgatggaacata 128
Query: 559 tacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagg 618
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 127 tatgtaaggaacattagcttcctcacatagtataggaacatgtgtaatcacatcaatagg 68
Query: 619 agaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactac 678
||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 67 agaaacatttccagcaatcacacacaaccctttgttcccgcggcgaatgctcttgactac 8
Query: 679 ctctttg 685
|||||||
Sbjct: 7 ctctttg 1
Score = 101 bits (51), Expect = 1e-019
Identities = 162/197 (82%), Gaps = 4/197 (2%)
Strand = Plus / Minus
Query: 109 aagacctggaacgcacacactagctaccgagatctgacaacacaaggaaacagtctgctc 168
||||||||||||| | |||||||||| |||| |||||| |||||||||||| || ||
Sbjct: 601 aagacctggaacgtgcctactagctaccaagattcgacaacccaaggaaacagtgtggtc 542
Query: 169 acagaactgattgtaattggctagatctaatcactggtagaatcatatgccgccaacaag 228
|| ||||||||| |||||||||| ||||||||| | || | ||| ||||||||||
Sbjct: 541 accgaactgattataattggctaaatctaatcattaataataggataatacgccaacaag 482
Query: 229 gatggtccatagcatataggtaaactc--atagtcatatctcgctccagccaccgtgcaa 286
||| ||||||| || |||||||||| ||||||||| |||||||||||||| |||||
Sbjct: 481 gatagtccataatatgcaggtaaactcatatagtcata--tcgctccagccaccatgcaa 424
Query: 287 aacatattggttcggtt 303
|||||| |||| |||||
Sbjct: 423 aacatactggtgcggtt 407
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 tgatataaggcgctaagatacc 58
||||||||||||||||||||||
Sbjct: 663 tgatataaggcgctaagatacc 642
>gb|BI098093.1|BI098093 IP1_31_H10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 591
Score = 482 bits (243), Expect = e-134
Identities = 285/299 (95%)
Strand = Plus / Minus
Query: 321 atactacaccaagaaagacgtgcacagggaattgccggattctcagataatgtggtcctc 380
|||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||
Sbjct: 299 atactacaccaagaaagatgtgcacatggagttgcctgattctcagataatatggtcctc 240
Query: 381 agaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgacttca 440
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 239 agaacattgcagacgtagcctcagcaacttccgttacaacttggtcatagtctgacttca 180
Query: 441 gtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagacgc 500
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 179 gtttatccttcacctcttcactgagctcccccttggttggtttggtcagaaccaagacgc 120
Query: 501 aacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatata 560
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 119 aacaagtcggcctctttgtggttcctgcagtcgcaagatcctcttttgatggaacatata 60
Query: 561 cgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagga 619
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 59 tgtaaggaacattagcttcctcacatagtataggaacatgtgtaatcacatcaatagga 1
Score = 101 bits (51), Expect = 1e-019
Identities = 162/197 (82%), Gaps = 4/197 (2%)
Strand = Plus / Minus
Query: 109 aagacctggaacgcacacactagctaccgagatctgacaacacaaggaaacagtctgctc 168
||||||||||||| | |||||||||| |||| |||||| |||||||||||| || ||
Sbjct: 533 aagacctggaacgtgcctactagctaccaagattcgacaacccaaggaaacagtgtggtc 474
Query: 169 acagaactgattgtaattggctagatctaatcactggtagaatcatatgccgccaacaag 228
|| ||||||||| |||||||||| ||||||||| | || | ||| ||||||||||
Sbjct: 473 accgaactgattataattggctaaatctaatcattaataataggataatacgccaacaag 414
Query: 229 gatggtccatagcatataggtaaactc--atagtcatatctcgctccagccaccgtgcaa 286
||| ||||||| || |||||||||| ||||||||| |||||||||||||| |||||
Sbjct: 413 gatagtccataatatgcaggtaaactcatatagtcata--tcgctccagccaccatgcaa 356
Query: 287 aacatattggttcggtt 303
|||||| |||| |||||
Sbjct: 355 aacatactggtgcggtt 339
>gb|AW678890.1|AW678890 WS1_21_C08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 248
Score = 333 bits (168), Expect = 2e-089
Identities = 200/210 (95%), Gaps = 3/210 (1%)
Strand = Plus / Minus
Query: 635 atcacacacaatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgc 694
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atcacacacaaccctttgttcccgcggcgaatgctcttgactacctctttgactccgcgc 185
Query: 695 ttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttc 754
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgaggcacttggcctcagaggctcgtcgcacgagcttgagggtccgcttgcagagcttc 125
Query: 755 tttccagcgaggggtttcgcgatggacatcagcgccaccgagg---ccttcttctccgtc 811
|||||||||||||| |||||||||| |||||||||||||| || |||||||||||||
Sbjct: 124 tttccagcgaggggcttcgcgatgggcatcagcgccaccggggtcttcttcttctccgtc 65
Query: 812 tccgtgtcgctccccatcgccgccgccgcc 841
||||||||||||||||||||||||||||||
Sbjct: 64 tccgtgtcgctccccatcgccgccgccgcc 35
>gb|CW265206.1|CW265206 104_734_11231737_148_35263_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231737, DNA
sequence
Length = 677
Score = 272 bits (137), Expect = 5e-071
Identities = 158/165 (95%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 ctcagaacattgcagacgtagcctcagcaacttccgttacaacttggtcatagtctgact 60
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 tcagtttatccttcacctcttcactgagctcccccttggttggtttggtcagaaccaaga 120
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 121 cgcaacaagtcggcctctttgtggttcctgcagtcgcaagatcct 165
>gb|CW210896.1|CW210896 104_641_11190029_116_37005_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190029, DNA
sequence
Length = 669
Score = 194 bits (98), Expect = 1e-047
Identities = 121/128 (94%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 717 ctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcga 776
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 52 ctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcga 111
Query: 777 tggacatcagcgccaccgagg---ccttcttctccgtctccgtgtcgctccccatcgccg 833
||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 112 tgggcatcagcgccaccggggtcttcttcttctccgtctccgtgtcgctccccatcgccg 171
Query: 834 ccgccgcc 841
||||||||
Sbjct: 172 ccgccgcc 179
>gb|CW409159.1|CW409159 fsbb001f103f18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103f18, DNA
sequence
Length = 692
Score = 194 bits (98), Expect = 1e-047
Identities = 121/128 (94%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 717 ctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcga 776
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 174 ctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcga 233
Query: 777 tggacatcagcgccaccgagg---ccttcttctccgtctccgtgtcgctccccatcgccg 833
||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 234 tgggcatcagcgccaccggggtcttcttcttctccgtctccgtgtcgctccccatcgccg 293
Query: 834 ccgccgcc 841
||||||||
Sbjct: 294 ccgccgcc 301
Score = 127 bits (64), Expect = 2e-027
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 647 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttc 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttg 64
Query: 707 gcctcggaggct 718
||||| ||||||
Sbjct: 65 gcctcagaggct 76
>gb|CW388513.1|CW388513 fsbb001f073e22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073e22, DNA
sequence
Length = 675
Score = 178 bits (90), Expect = 6e-043
Identities = 102/106 (96%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 524 cctcttttgatggaacatatatgtaaggaacattagcttcctcacatagtataggaacat 465
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
|||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 464 gtgtaatcacatcaataggagaaacatttccagcaatcacacacaa 419
>gb|CW314354.1|CW314354 104_805_11471786_116_35818_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471786, DNA
sequence
Length = 719
Score = 176 bits (89), Expect = 2e-042
Identities = 115/123 (93%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 717 ctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcga 776
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 574 ctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcga 633
Query: 777 tggacatcagcgccaccgaggccttcttct---ccgtctccgtgtcgctccccatcgccg 833
||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 634 tgggcatcagcgccaccggggtcttcttctttctcgtctccgtgtcgctccccatcgccg 693
Query: 834 ccg 836
|||
Sbjct: 694 ccg 696
Score = 127 bits (64), Expect = 2e-027
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 647 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttc 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttg 464
Query: 707 gcctcggaggct 718
||||| ||||||
Sbjct: 465 gcctcagaggct 476
>gb|CW388512.1|CW388512 fsbb001f073e22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073e22, DNA
sequence
Length = 442
Score = 151 bits (76), Expect = 1e-034
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 451 cacctctccactgagctcccccttgtttggtttggtcagaaccaagacgcaacaagtcgg 510
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 cacctcttcactgagctcccccttggttggtttggtcagaaccaagacgcaacaagtcgg 60
Query: 511 cctcttagtggttcctgcggtcgcaagatcct 542
|||||| ||||||||||| |||||||||||||
Sbjct: 61 cctctttgtggttcctgcagtcgcaagatcct 92
>gb|CW265205.1|CW265205 104_734_11231737_116_35259_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231737, DNA
sequence
Length = 677
Score = 143 bits (72), Expect = 3e-032
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 80 cctcttttgatggaacatatatgtaaggaacattagcttcctcacatagtataggaacat 21
Query: 600 gtgtaatcacatcaatagga 619
||||||||||||||||||||
Sbjct: 20 gtgtaatcacatcaatagga 1
>gb|CW104118.1|CW104118 104_473_11012257_148_34438_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012257, DNA
sequence
Length = 709
Score = 73.8 bits (37), Expect = 2e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 109 aagacctggaacgcacacactagctaccgagatctgacaacacaaggaaacagtctgctc 168
||||||||||||| | |||||||||| |||| |||||| |||||||||||| || ||
Sbjct: 89 aagacctggaacgtgcctactagctaccaagattcgacaacccaaggaaacagtgtggtc 30
Query: 169 acagaactgattgtaattggctagatcta 197
|| ||||||||| |||||||||| |||||
Sbjct: 29 accgaactgattataattggctaaatcta 1
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 tgatataaggcgctaagatacc 58
||||||||||||||||||||||
Sbjct: 151 tgatataaggcgctaagatacc 130
>gb|CW272731.1|CW272731 104_745_11403535_148_35360_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403535, DNA
sequence
Length = 738
Score = 69.9 bits (35), Expect = 4e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatgg 779
|||||||||||||| ||||||||||||||||| || ||||| || ||||||||||
Sbjct: 344 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgg 290
>gb|CW271328.1|CW271328 104_743_11402940_116_35339_040 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11402940, DNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 tgatataaggcgctaagatacc 58
||||||||||||||||||||||
Sbjct: 98 tgatataaggcgctaagatacc 77
>gb|CW195881.1|CW195881 104_619_11180870_116_36808_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180870, DNA
sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.085
Identities = 96/121 (79%)
Strand = Plus / Plus
Query: 422 tggtcatagtccgacttcagtttatccttcacctctccactgagctcccccttgtttggt 481
||||| ||||||| ||| ||||| ||| | ||||| || ||||||||||||| |||
Sbjct: 489 tggtcgtagtccgtcttgagtttctccatgacctcgccctcgagctcccccttggctggc 548
Query: 482 ttggtcagaaccaagacgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcc 541
|| ||||| |||| |||||||| || ||||| || ||||| || || || |||||||||
Sbjct: 549 ttcgtcagcaccagcacgcaacaggtaggccttttggtggtgccagcagttgcaagatcc 608
Query: 542 t 542
|
Sbjct: 609 t 609
>gb|CW195882.1|CW195882 104_619_11180870_148_36804_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180870, DNA
sequence
Length = 693
Score = 42.1 bits (21), Expect = 0.085
Identities = 96/121 (79%)
Strand = Plus / Minus
Query: 422 tggtcatagtccgacttcagtttatccttcacctctccactgagctcccccttgtttggt 481
||||| ||||||| ||| ||||| ||| | ||||| || ||||||||||||| |||
Sbjct: 450 tggtcgtagtccgtcttgagtttctccatgacctcgccctcgagctcccccttggctggc 391
Query: 482 ttggtcagaaccaagacgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcc 541
|| ||||| |||| |||||||| || ||||| || ||||| || || || |||||||||
Sbjct: 390 ttcgtcagcaccagcacgcaacaggtaggccttttggtggtgccagcagttgcaagatcc 331
Query: 542 t 542
|
Sbjct: 330 t 330
>gb|AW744937.1|AW744937 LG1_384_B01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 722 cgcacgagcttgagggtccgc 742
|||||||||||||||||||||
Sbjct: 140 cgcacgagcttgagggtccgc 120
>gb|BZ366834.1|BZ366834 ic99f06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99f06 5', DNA sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 554 tccccatcgccgccgccgcc 535
>gb|CL157930.1|CL157930 104_346_10803177_116_31376_153 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803177, DNA
sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.34
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 733 gagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccac 792
||||||||||||||| || || || || ||||||| |||||||| || ||||||| |
Sbjct: 208 gagggtccgcttgcaaagatttttgccggcgagggtactcgcgatgcacgccagcgcccc 149
Query: 793 cgaggccttctt 804
|| |||||||||
Sbjct: 148 cggggccttctt 137
>gb|CW089741.1|CW089741 104_435_10948883_114_32596_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948883, DNA
sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 828 tcgccgccgccgccttcgac 847
||||||||||||||||||||
Sbjct: 660 tcgccgccgccgccttcgac 679
>gb|CW135554.1|CW135554 104_520_11117911_148_34832_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117911, DNA
sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 829 cgccgccgccgccttcgacc 848
||||||||||||||||||||
Sbjct: 176 cgccgccgccgccttcgacc 157
>gb|CW164613.1|CW164613 104_572_11152078_116_36468_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152078, DNA
sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 572 tccccatcgccgccgccgcc 591
>gb|CW176000.1|CW176000 104_588_11158254_116_36581_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158254, DNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 829 cgccgccgccgccttcgacc 848
||||||||||||||||||||
Sbjct: 444 cgccgccgccgccttcgacc 425
>gb|CW226474.1|CW226474 104_664_11204904_116_37218_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204904, DNA
sequence
Length = 704
Score = 40.1 bits (20), Expect = 0.34
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 733 gagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccac 792
||||||||||||||| || || || || ||||||| |||||||| || ||||||| |
Sbjct: 78 gagggtccgcttgcaaagatttttgccggcgagggtactcgcgatgcacgccagcgcccc 137
Query: 793 cgaggccttctt 804
|| |||||||||
Sbjct: 138 cggggccttctt 149
>gb|CW253395.1|CW253395 104_717_11225062_148_35107_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225062, DNA
sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 273 tccccatcgccgccgccgcc 254
>gb|CW271086.1|CW271086 104_743_11402803_148_35342_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402803, DNA
sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 311 tccccatcgccgccgccgcc 292
>gb|CW364838.1|CW364838 fsbb001f037b03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f037b03, DNA
sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 272 tccccatcgccgccgccgcc 291
>gb|CW381990.1|CW381990 fsbb001f063k11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063k11, DNA
sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 335 tccccatcgccgccgccgcc 354
>gb|CW433355.1|CW433355 fsbb001f148i15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148i15, DNA
sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.34
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 733 gagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccac 792
||||||||||||||| || || || || ||||||| |||||||| || ||||||| |
Sbjct: 483 gagggtccgcttgcaaagatttttgccggcgagggtactcgcgatgcacgccagcgcccc 424
Query: 793 cgaggccttctt 804
|| |||||||||
Sbjct: 423 cggggccttctt 412
>gb|CW501966.1|CW501966 fsbb001f298b02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298b02, DNA
sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 828 tcgccgccgccgccttcgac 847
||||||||||||||||||||
Sbjct: 570 tcgccgccgccgccttcgac 551
>gb|BE355813.1|BE355813 DG1_11_F07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 73 tccccatcgccgccgccgcc 54
>gb|BE358311.1|BE358311 DG1_29_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 73 tccccatcgccgccgccgcc 54
>gb|BE361444.1|BE361444 DG1_72_D04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 59 tccccatcgccgccgccgcc 40
>gb|BG240406.1|BG240406 OV1_29_F07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 74 tccccatcgccgccgccgcc 55
>gb|CF483081.1|CF483081 POL1_11_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_D11_A002 3', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 822 tccccatcgccgccgccgcc 841
||||||||||||||||||||
Sbjct: 115 tccccatcgccgccgccgcc 134
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 319,108
Number of Sequences: 832831
Number of extensions: 319108
Number of successful extensions: 123838
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123755
Number of HSP's gapped (non-prelim): 73
length of query: 878
length of database: 491,359,669
effective HSP length: 20
effective length of query: 858
effective length of database: 474,703,049
effective search space: 407295216042
effective search space used: 407295216042
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)