BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCS16e03.yg.2.1
         (608 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ534481.1|AJ534481  AJ534481 Populus euphratica root and...    42   0.024
gb|CA933471.1|CA933471  MTU5CS.P8.E06 Aspen stem cDNA Librar...    40   0.095
gb|CF118925.1|CF118925  MTU10CS.P11.C02 Aspen stem cDNA Libr...    40   0.095
gb|CA924833.1|CA924833  MTU7TL.P10.B12 Aspen leaf cDNA Libra...    38   0.38 
gb|CA925020.1|CA925020  MTU7TL.P12.F05 Aspen leaf cDNA Libra...    38   0.38 
gb|AF139835.1|AF139835  Populus tremula x Populus tremuloide...    38   0.38 
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
           clone 46, mRNA sequence
          Length = 574

 Score = 42.1 bits (21), Expect = 0.024
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtacc 21
           |||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtacc 478
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.095
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtac 289
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 0.095
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtac 656

 Score = 40.1 bits (20), Expect = 0.095
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtac 625
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 569

 Score = 38.2 bits (19), Expect = 0.38
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   gcggccgcccgggcaggta 19
           |||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 568

 Score = 38.2 bits (19), Expect = 0.38
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   gcggccgcccgggcaggta 19
           |||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
          TIR1 (TIR1) mRNA, complete cds
          Length = 2646

 Score = 38.2 bits (19), Expect = 0.38
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  gcggccgcccgggcaggta 19
          |||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,956
Number of Sequences: 369679
Number of extensions: 54956
Number of successful extensions: 15483
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15473
Number of HSP's gapped (non-prelim): 10
length of query: 608
length of database: 203,408,664
effective HSP length: 19
effective length of query: 589
effective length of database: 196,384,763
effective search space: 115670625407
effective search space used: 115670625407
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)