BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU877220.1|BU877220 V031E03 Populus flower cDNA library ... 42 0.019
gb|CN524760.1|CN524760 GQ015M08.T3_E03 GQ015 Populus tricho... 42 0.019
gb|CV225534.1|CV225534 WS0161.B21_K23 PT-DX-A-7 Populus tri... 42 0.019
gb|CV229388.1|CV229388 WS01913.B21_C08 PT-DX-N-A-10 Populus... 42 0.019
gb|CV235532.1|CV235532 WS0122.B21_I03 PT-GT-FL-A-3 Populus ... 42 0.019
gb|CV251704.1|CV251704 WS0118.B21.1_A21 PT-P-FL-A-2 Populus... 42 0.019
gb|CV252736.1|CV252736 PX0015.B21_M17 PT-X-FL-A-1 Populus t... 42 0.019
gb|CV261192.1|CV261192 WS02016.B21_B20 PTxN-IB-N-A-11 Popul... 42 0.019
gb|CV269924.1|CV269924 WS0209.B21_J17 PTxN-IB-N-A-11 Populu... 42 0.019
gb|CV276522.1|CV276522 WS0141.B21_B02 PTxD-IL-A-5 Populus t... 42 0.019
gb|CX169963.1|CX169963 E05_69-16_09.ab1 leaf inoculated wit... 42 0.019
gb|DT496858.1|DT496858 WS01124.BR_M03 PT-P-FL-A-2 Populus t... 42 0.019
gb|DT498427.1|DT498427 WS0115.BR_F07 PT-P-FL-A-2 Populus tr... 42 0.019
gb|DT499345.1|DT499345 WS0118.BR_A21 PT-P-FL-A-2 Populus tr... 42 0.019
gb|DV465611.1|DV465611 MTUNUL1.P40.G11 NUL Populus fremonti... 42 0.019
gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Po... 40 0.075
gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6... 40 0.075
>gb|BU877220.1|BU877220 V031E03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 603 ccagtagcacggtattttgca 583
>gb|CN524760.1|CN524760 GQ015M08.T3_E03 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M08_E03 5', mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 264 ccagtagcacggtattttgca 244
>gb|CV225534.1|CV225534 WS0161.B21_K23 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_K23
3', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 338 ccagtagcacggtattttgca 358
>gb|CV229388.1|CV229388 WS01913.B21_C08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_C08 3', mRNA sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 432 ccagtagcacggtattttgca 452
>gb|CV235532.1|CV235532 WS0122.B21_I03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_I03 3', mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 336 ccagtagcacggtattttgca 356
>gb|CV251704.1|CV251704 WS0118.B21.1_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0118_A21 3', mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 255 ccagtagcacggtattttgca 275
>gb|CV252736.1|CV252736 PX0015.B21_M17 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_M17 3', mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 336 ccagtagcacggtattttgca 356
>gb|CV261192.1|CV261192 WS02016.B21_B20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_B20 3', mRNA sequence
Length = 411
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 300 ccagtagcacggtattttgca 320
>gb|CV269924.1|CV269924 WS0209.B21_J17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_J17 3', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 299 ccagtagcacggtattttgca 319
>gb|CV276522.1|CV276522 WS0141.B21_B02 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_B02 3', mRNA sequence
Length = 879
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 302 ccagtagcacggtattttgca 322
>gb|CX169963.1|CX169963 E05_69-16_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 610 ccagtagcacggtattttgca 590
>gb|DT496858.1|DT496858 WS01124.BR_M03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_M03 5', mRNA sequence
Length = 926
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 618 ccagtagcacggtattttgca 598
>gb|DT498427.1|DT498427 WS0115.BR_F07 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_F07
5', mRNA sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 617 ccagtagcacggtattttgca 597
>gb|DT499345.1|DT499345 WS0118.BR_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_A21
5', mRNA sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 617 ccagtagcacggtattttgca 597
>gb|DV465611.1|DV465611 MTUNUL1.P40.G11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgca 263
|||||||||||||||||||||
Sbjct: 629 ccagtagcacggtattttgca 609
>gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.075
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 3 actgttttcaaccaatcaaaaccagacggatt 34
||||| |||||||||||||| ||||| |||||
Sbjct: 67 actgtcttcaaccaatcaaagccagatggatt 36
>gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400015B12F1, mRNA sequence
Length = 468
Score = 40.1 bits (20), Expect = 0.075
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 acaaaaccacggccagtagc 250
||||||||||||||||||||
Sbjct: 400 acaaaaccacggccagtagc 381
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,538
Number of Sequences: 369679
Number of extensions: 67538
Number of successful extensions: 18101
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18083
Number of HSP's gapped (non-prelim): 18
length of query: 480
length of database: 203,408,664
effective HSP length: 19
effective length of query: 461
effective length of database: 196,384,763
effective search space: 90533375743
effective search space used: 90533375743
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)