BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL28h07.yg.2.1
(277 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 103 3e-021
gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in... 84 3e-015
gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Po... 80 5e-014
gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZA... 72 1e-011
gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6... 68 2e-010
gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library... 58 2e-007
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 50 4e-005
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 7e-004
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.003
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.011
gb|AJ771128.1|AJ771128 AJ771128 Populus euphratica leaf 3-6... 42 0.011
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.042
gb|AJ771523.1|AJ771523 AJ771523 Populus euphratica root 3-6... 40 0.042
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.17
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.17
gb|AJ776836.1|AJ776836 AJ776836 Populus euphratica root 3-6... 38 0.17
gb|CX168694.1|CX168694 D07_69-121_07.ab1 leaf inoculated wi... 38 0.17
gb|DT490100.1|DT490100 WS02544.B21_A15 PT-MB-N-A-15 Populus... 38 0.17
gb|DT517354.1|DT517354 WS02434.B21_B08 PTxD-ICC-N-A-14 Popu... 38 0.17
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 103 bits (52), Expect = 3e-021
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 17 gtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcac 76
||||| ||| |||||||||| |||||||| ||||||||||||| ||||| ||||||||
Sbjct: 145 gtatggctgaccaaatatttgatacacaacgagcaaaatcatcatctcaatacccttcac 86
Query: 77 aaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaa 136
|||||| || || ||||| | | ||||||||||||||||||||||||||||| |||||
Sbjct: 85 aaaatgactgcgggaatagagcctgtaattctcagcaaacttggcatggaacactacaaa 26
>gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700001C10F1, mRNA sequence
Length = 341
Score = 83.8 bits (42), Expect = 3e-015
Identities = 147/182 (80%)
Strand = Plus / Plus
Query: 42 acaataagcaaaatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcga 101
|||| ||||| |||||||| |||||| || || || |||||||| || |||||||| |
Sbjct: 105 acaagaagcagaatcatcaattcaatccctttgacgaaatggctgcgagaatacaacctg 164
Query: 102 taattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattca 161
|| || ||||||||||| ||||||||||| ||||| ||||| || |||||||| ||| |
Sbjct: 165 tagttatcagcaaacttagcatggaacactacaaagccacggccagtagctctgtatgct 224
Query: 162 gctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtg 221
| |||||||| |||| || |||| || |||||||| || || |||||||| ||||||
Sbjct: 225 gaacctccatgcagcaatgtccttccataatagtgagtctttgttccaagagaaaatgtg 284
Query: 222 aa 223
||
Sbjct: 285 aa 286
>gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 467
Score = 79.8 bits (40), Expect = 5e-014
Identities = 142/176 (80%)
Strand = Plus / Minus
Query: 48 agcaaaatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattc 107
|||| |||||||| |||||| || || || |||||||| || |||||||| | || ||
Sbjct: 333 agcagaatcatcaattcaatccctttgacgaaatggctgcgagaatacaacctgtagtta 274
Query: 108 tcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattcagctcct 167
||||||||||| ||||||||||| ||||| ||||| || |||||||| ||| | | |||
Sbjct: 273 tcagcaaacttagcatggaacactacaaagccacggccagtagctctgtatgctgaacct 214
Query: 168 ccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatgtgaa 223
||||| |||| || |||| || |||||||| || || |||||||| ||||||||
Sbjct: 213 ccatgcagcaatgtccttccataatagtgagtctttgttccaagagaaaatgtgaa 158
>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 645
Score = 71.9 bits (36), Expect = 1e-011
Identities = 99/120 (82%)
Strand = Plus / Minus
Query: 17 gtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcac 76
||||| ||| |||||||||| ||| |||| |||||||||||||| ||||| ||||| ||
Sbjct: 417 gtatggctgaccaaatatttgataaacaacaagcaaaatcatcatctcaatacccttgac 358
Query: 77 aaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaa 136
||| || || || ||||| | | ||| || |||||||| ||||||||||| ||||||||
Sbjct: 357 aaagtgactgcgggaataaagcctatagttgtcagcaaatttggcatggaagaccacaaa 298
>gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400015B12F1, mRNA sequence
Length = 468
Score = 67.9 bits (34), Expect = 2e-010
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 78 aaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaat 137
|||||||| || |||||||| | || || ||||||||||| ||||||||||| |||||
Sbjct: 454 aaatggctgcgagaatacaacctgtagttatcagcaaacttagcatggaacactacaaaa 395
Query: 138 ccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccgtagtagtga 197
||||| || |||||||| ||| | | |||||||| |||| || |||| || ||||||
Sbjct: 394 ccacggccagtagctctgtatgctgaacctccatgcagcaatgtccttccataatagtga 335
Query: 198 gttttggtcccaagagagaatgtgaa 223
|| || || |||||||| ||||||||
Sbjct: 334 gtctttgttccaagagaaaatgtgaa 309
>gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B010P30 5', mRNA sequence
Length = 297
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 48 agcaaaatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattc 107
|||| |||||||| |||||| || || || |||||||| || |||||||| | || ||
Sbjct: 116 agcagaatcatcaattcaatccctttgacgaaatggctgcgagaatacaacctgtagtta 57
Query: 108 tcagcaaacttggcatggaacaccacaaa 136
||||||||||| ||||||||||| |||||
Sbjct: 56 tcagcaaacttagcatggaacactacaaa 28
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgctcgaa 503
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 254 tacctgcccgggcggccgctcga 276
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related
protein 1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcga 276
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 252 agtacctgcccgggcggccgc 272
|||||||||||||||||||||
Sbjct: 657 agtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.042
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgc 272
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|AJ771128.1|AJ771128 AJ771128 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500002B06F1, mRNA sequence
Length = 415
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 247 gcataagtacctgcccgggcg 267
|||||||||||||||||||||
Sbjct: 395 gcataagtacctgcccgggcg 415
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.042
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgc 272
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|AJ771523.1|AJ771523 AJ771523 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002C05F1, mRNA sequence
Length = 221
Score = 40.1 bits (20), Expect = 0.042
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 249 ataagtacctgcccgggcgg 268
||||||||||||||||||||
Sbjct: 198 ataagtacctgcccgggcgg 217
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.17
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgc 272
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.17
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgc 272
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|AJ776836.1|AJ776836 AJ776836 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400019B12F1, mRNA sequence
Length = 342
Score = 38.2 bits (19), Expect = 0.17
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 222 aagaacacagatgctaactggagctgcataa 252
|||||||||||||| | ||| ||||||||||
Sbjct: 342 aagaacacagatgcaagctgtagctgcataa 312
>gb|CX168694.1|CX168694 D07_69-121_07.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.17
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 198 gttttggtcccaagagaga 216
|||||||||||||||||||
Sbjct: 172 gttttggtcccaagagaga 154
>gb|DT490100.1|DT490100 WS02544.B21_A15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_A15 3', mRNA sequence
Length = 830
Score = 38.2 bits (19), Expect = 0.17
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 198 gttttggtcccaagagaga 216
|||||||||||||||||||
Sbjct: 585 gttttggtcccaagagaga 603
>gb|DT517354.1|DT517354 WS02434.B21_B08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_B08 3', mRNA sequence
Length = 785
Score = 38.2 bits (19), Expect = 0.17
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 198 gttttggtcccaagagaga 216
|||||||||||||||||||
Sbjct: 589 gttttggtcccaagagaga 607
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,873
Number of Sequences: 369679
Number of extensions: 36873
Number of successful extensions: 12438
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12412
Number of HSP's gapped (non-prelim): 24
length of query: 277
length of database: 203,408,664
effective HSP length: 18
effective length of query: 259
effective length of database: 196,754,442
effective search space: 50959400478
effective search space used: 50959400478
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)