BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cD... 62 6e-009
gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium... 62 6e-009
gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus tri... 62 6e-009
gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Po... 62 6e-009
gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Popul... 62 6e-009
gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Popul... 62 6e-009
gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Popul... 62 6e-009
gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Popu... 62 6e-009
gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Popu... 62 6e-009
gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Popu... 62 6e-009
gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Popu... 62 6e-009
gb|AJ774281.1|AJ774281 AJ774281 Populus euphratica shoot 3-... 60 3e-008
gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA li... 54 2e-006
gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii... 46 4e-004
gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremonti... 46 4e-004
gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated wit... 38 0.094
gb|CX187349.1|CX187349 B08_45-65_04.ab1 leaf inoculated wit... 38 0.094
gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDN... 38 0.094
gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus... 38 0.094
gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populu... 38 0.094
gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Popu... 38 0.094
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 36 0.37
gb|CV230090.1|CV230090 WS01915.B21_G07 PT-DX-N-A-10 Populus... 36 0.37
gb|CV232624.1|CV232624 WS0198.B21_C24 PT-DX-N-A-10 Populus ... 36 0.37
gb|CV236638.1|CV236638 WS01224.B21.1_N11 PT-GT-FL-A-3 Popul... 36 0.37
gb|CV257104.1|CV257104 WS0245.B21_K23 PTxD-ICC-N-A-14 Popul... 36 0.37
>gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 473
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 137 tgccgtgatatctacagttcagattctgaatggaagatcatattact 183
>gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 3', mRNA sequence
Length = 875
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 795 tgccgtgatatctacagttcagattctgaatggaagatcatattact 749
>gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G06
3', mRNA sequence
Length = 918
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 818 tgccgcgatatctacagttcagattctgaatggaagatcatattact 772
>gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02034A05 5', mRNA sequence
Length = 335
Score = 61.9 bits (31), Expect = 6e-009
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 97 gatatctaccgttcagatcctgaatggaagatcattttactta 139
||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 83 gatatctaccgttcagactctgaatggaagatcattttgctta 125
>gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M06 3', mRNA sequence
Length = 922
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 851 tgccgcgatatctacagttcagattctgaatggaagatcatattact 805
>gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 5', mRNA sequence
Length = 833
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 554 tgccgcgatatctacagttcagattctgaatggaagatcatattact 600
>gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 5', mRNA sequence
Length = 882
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 193 tgccgcgatatctacagttcagattctgaatggaagatcatattact 239
>gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 3', mRNA sequence
Length = 914
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 809 tgccgcgatatctacagttcagattctgaatggaagatcatattact 763
>gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 3', mRNA sequence
Length = 922
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 779 tgccgcgatatctacagttcagattctgaatggaagatcatattact 733
>gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_G17 3', mRNA sequence
Length = 881
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 806 tgccgcgatatctacagttcagattctgaatggaagatcatattact 760
>gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_J11 3', mRNA sequence
Length = 794
Score = 61.9 bits (31), Expect = 6e-009
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 791 tgccgcgatatctacagttcagattctgaatggaagatcatattact 745
>gb|AJ774281.1|AJ774281 AJ774281 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300015C02F1, mRNA sequence
Length = 537
Score = 60.0 bits (30), Expect = 3e-008
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 95 gggatatctaccgttcagatcctgaatggaagatcattttacttag 140
||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 489 gggatatctaccgttcagactctggaaggaagatcattttacttag 534
>gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA library Populus tremula cDNA
clone P029C05 5', mRNA sequence
Length = 877
Score = 54.0 bits (27), Expect = 2e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 100 atctaccgttcagatcctgaatggaagatcatttt 134
|||||||||||||| |||||||||||||||||||
Sbjct: 792 atctaccgttcagactctgaatggaagatcatttt 826
>gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 593
Score = 46.1 bits (23), Expect = 4e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| ||||||| || ||||||||||||| |||||
Sbjct: 443 tgccgcgatatctacacttcagattctaaatggaagatcatattact 489
>gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 853
Score = 46.1 bits (23), Expect = 4e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 91 tgccgggatatctaccgttcagatcctgaatggaagatcattttact 137
||||| ||||||||| ||||||| || ||||||||||||| |||||
Sbjct: 707 tgccgcgatatctacacttcagattctaaatggaagatcatattact 753
>gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 738
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 118 gaatggaagatcattttacttaggtac 144
||||||| ||||||||||||||||||
Sbjct: 576 gaatggagtatcattttacttaggtac 602
>gb|CX187349.1|CX187349 B08_45-65_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 592
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 118 gaatggaagatcattttacttaggtac 144
||||||| ||||||||||||||||||
Sbjct: 563 gaatggagtatcattttacttaggtac 589
>gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 5', mRNA sequence
Length = 797
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 118 gaatggaagatcattttacttaggtac 144
||||||| ||||||||||||||||||
Sbjct: 639 gaatggagtatcattttacttaggtac 665
>gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_N20 3', mRNA sequence
Length = 807
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 118 gaatggaagatcattttacttaggtac 144
||||||| ||||||||||||||||||
Sbjct: 771 gaatggagtatcattttacttaggtac 745
>gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_H02 3', mRNA sequence
Length = 935
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 118 gaatggaagatcattttacttaggtac 144
||||||| ||||||||||||||||||
Sbjct: 801 gaatggagtatcattttacttaggtac 775
>gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_L17 3', mRNA sequence
Length = 925
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 118 gaatggaagatcattttacttaggtac 144
||||||| ||||||||||||||||||
Sbjct: 790 gaatggagtatcattttacttaggtac 764
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 36.2 bits (18), Expect = 0.37
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 478 ggtacctgcccgggcggccgctcgaa 503
>gb|CV230090.1|CV230090 WS01915.B21_G07 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_G07 3', mRNA sequence
Length = 506
Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35 ttcctcttactccaaaca 52
||||||||||||||||||
Sbjct: 203 ttcctcttactccaaaca 186
>gb|CV232624.1|CV232624 WS0198.B21_C24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_C24 3', mRNA sequence
Length = 506
Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35 ttcctcttactccaaaca 52
||||||||||||||||||
Sbjct: 203 ttcctcttactccaaaca 186
>gb|CV236638.1|CV236638 WS01224.B21.1_N11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_N11 3', mRNA sequence
Length = 560
Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35 ttcctcttactccaaaca 52
||||||||||||||||||
Sbjct: 211 ttcctcttactccaaaca 194
>gb|CV257104.1|CV257104 WS0245.B21_K23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_K23 3', mRNA sequence
Length = 498
Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35 ttcctcttactccaaaca 52
||||||||||||||||||
Sbjct: 213 ttcctcttactccaaaca 196
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,069
Number of Sequences: 369679
Number of extensions: 21069
Number of successful extensions: 5299
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5274
Number of HSP's gapped (non-prelim): 26
length of query: 164
length of database: 203,408,664
effective HSP length: 18
effective length of query: 146
effective length of database: 196,754,442
effective search space: 28726148532
effective search space used: 28726148532
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)