BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH30c02.yg.2.1
(722 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK318616.1|CK318616 X9P01c10 Populus stem seasonal libra... 38 0.45
gb|CV259125.1|CV259125 WS02010.B21_H03 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV263762.1|CV263762 WS02022.B21_L12 PTxN-IB-N-A-11 Popul... 38 0.45
gb|DT490551.1|DT490551 WS02545.B21_E10 PT-MB-N-A-15 Populus... 38 0.45
gb|AY372451.1| Populus balsamifera subsp. trichocarpa x Pop... 38 0.45
>gb|CK318616.1|CK318616 X9P01c10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 635
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 296 aggatcgtcaatgtaggaa 314
|||||||||||||||||||
Sbjct: 39 aggatcgtcaatgtaggaa 21
>gb|CV259125.1|CV259125 WS02010.B21_H03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_H03 3', mRNA sequence
Length = 758
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 249 gcttctgttgccattctag 267
|||||||||||||||||||
Sbjct: 98 gcttctgttgccattctag 80
>gb|CV263762.1|CV263762 WS02022.B21_L12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_L12 3', mRNA sequence
Length = 939
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 296 aggatcgtcaatgtaggaa 314
|||||||||||||||||||
Sbjct: 604 aggatcgtcaatgtaggaa 622
>gb|DT490551.1|DT490551 WS02545.B21_E10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_E10 3', mRNA sequence
Length = 276
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 460 aaaccacagaaacagcagc 478
|||||||||||||||||||
Sbjct: 82 aaaccacagaaacagcagc 100
>gb|AY372451.1| Populus balsamifera subsp. trichocarpa x Populus deltoides
phenylalanine ammonia lyase (PAL) mRNA, complete cds
Length = 2136
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 296 aggatcgtcaatgtaggaa 314
|||||||||||||||||||
Sbjct: 1731 aggatcgtcaatgtaggaa 1713
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,847
Number of Sequences: 369679
Number of extensions: 74847
Number of successful extensions: 20623
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20618
Number of HSP's gapped (non-prelim): 5
length of query: 722
length of database: 203,408,664
effective HSP length: 19
effective length of query: 703
effective length of database: 196,384,763
effective search space: 138058488389
effective search space used: 138058488389
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)