BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH22b04.yg.2.1
(457 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT480100.1|DT480100 WS02527.BR_O22 PT-MB-N-A-15 Populus ... 121 2e-026
gb|BI139484.1|BI139484 F132P54Y Populus flower cDNA library... 119 1e-025
gb|BI070498.1|BI070498 C039P08U Populus strain T89 leaves P... 84 5e-015
gb|CF230847.1|CF230847 PtaC0014A4A0402 Poplar cDNA library ... 74 5e-012
gb|DV465821.1|DV465821 MTUNUL1.P43.F01 NUL Populus fremonti... 72 2e-011
gb|DV463218.1|DV463218 MTUNUL1.P13.B10 NUL Populus fremonti... 64 5e-009
gb|BI136266.1|BI136266 F065P78Y Populus flower cDNA library... 52 2e-005
gb|CN518806.1|CN518806 GQ0102.B3_C22 GQ010 Populus trichoca... 50 7e-005
gb|BI136871.1|BI136871 F075P74Y Populus flower cDNA library... 44 0.005
gb|BU836496.1|BU836496 T087C12 Populus apical shoot cDNA li... 44 0.005
gb|DN499789.1|DN499789 T087C12.5pR Populus shoot meristem c... 44 0.005
gb|BU809188.1|BU809188 UL54PG11 Populus leaf cDNA library P... 40 0.071
gb|DN500469.1|DN500469 UL54PG11.5pR Populus cold stressed l... 40 0.071
gb|CN518092.1|CN518092 GQ0092.B3_N15 GQ009 Populus trichoca... 38 0.28
gb|DN490490.1|DN490490 UL54PG11.3pR Populus cold stressed l... 38 0.28
>gb|DT480100.1|DT480100 WS02527.BR_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_O22 5', mRNA sequence
Length = 817
Score = 121 bits (61), Expect = 2e-026
Identities = 259/325 (79%)
Strand = Plus / Plus
Query: 8 gttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttc 67
|||| ||||| |||||||| ||||| || |||| | || ||||| |||||||||||||
Sbjct: 463 gttattttgcaatgaaggtaatggacaaaggttctcttgccagtcgtaagaagctgcttc 522
Query: 68 gagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgt 127
| |||||||| ||| | || || |||| || ||||||| || || || || | || |
Sbjct: 523 gggctcagacagagagagaaatattgcaatctttggaccaccctttccttccgtcgctct 582
Query: 128 atactcactttgagacagacaagttttcatgcttggttatggaattctgccctggagggg 187
| || |||||||| ||||| || |||||||| |||| ||||| ||||| |||||||| |
Sbjct: 583 acacccactttgaaacagataaattttcatgtctggtaatggagttctgtcctggaggag 642
Query: 188 atcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagt 247
|| | ||||||||| | || |||||||| || ||| | ||| ||||| |||| ||| |
Sbjct: 643 atttgcacactcttaggcagaggcagccagggaaacactttctggagcaggcagtaaaat 702
Query: 248 tctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatacc 307
| |||||||| ||||| || || || |||||||| |||||||||||||||| || ||||
Sbjct: 703 tttatgtagcagaggttctgctagctttggaatatttgcatatgcttgggatcatttacc 762
Query: 308 gtgatcttaaaccagagaatgtcct 332
|||||||||| ||||||||||||||
Sbjct: 763 gtgatcttaagccagagaatgtcct 787
>gb|BI139484.1|BI139484 F132P54Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 430
Score = 119 bits (60), Expect = 1e-025
Identities = 228/284 (80%)
Strand = Plus / Plus
Query: 49 agtcggaagaagctgcttcgagctcagaccgagcgggagatcctgcagtccctggaccat 108
||||| |||||||||||||| |||||||| || | || || |||| || |||||||||
Sbjct: 6 agtcgcaagaagctgcttcgggctcagacagaaagagaaatattgcaatctctggaccat 65
Query: 109 ccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggttatg 168
|| || || ||||| || || || |||||||||||||| || || || || | | |||
Sbjct: 66 cctttccttccaactctctacacccactttgagacagataaattctcttgtctattaatg 125
Query: 169 gaattctgccctggaggggatcttcacactcttcgccaaaggcagcctggaaaatatttt 228
|| ||||| |||||||| || | |||||||| | || |||| ||| || ||| |||||
Sbjct: 126 gagttctgtcctggaggagacttgcacactctcagacagaggctgccagggaaacatttt 185
Query: 229 tcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaatacctgcat 288
|||||| |||| |||||| |||||||| ||||| || || || |||||||| |||||
Sbjct: 186 caagagcaggcagtaaagttttatgtagcagaggtcctgctagctttggaatatttgcat 245
Query: 289 atgcttgggattatataccgtgatcttaaaccagagaatgtcct 332
|||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 246 atgcttgggattatttaccgtgatcttaagccagaaaatgtcct 289
>gb|BI070498.1|BI070498 C039P08U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 416
Score = 83.8 bits (42), Expect = 5e-015
Identities = 85/98 (86%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 231 agagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaatacctgcatat 290
|||||| |||| |||||| ||||| || ||||| || || || |||||||| |||||||
Sbjct: 180 agagcaggcagtaaagttttatgtcgcagaggttctgctagctttggaatatttgcatat 239
Query: 291 gcttgggattatataccgtgatcttaaaccagagaatg 328
|||||||||||| |||||||||||||| ||||||||||
Sbjct: 240 gcttgggattat-taccgtgatcttaagccagagaatg 276
Score = 50.1 bits (25), Expect = 7e-005
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 50 gtcggaagaagctgcttcgagctcagaccgagcgggagatcctgcagtccctggaccatc 109
|||| |||||||||||||| |||||||| || | || || |||| || ||||||||||
Sbjct: 1 gtcgcaagaagctgcttcgggctcagacagaaagagaaatattgcaatctctggaccatc 60
Query: 110 catttctaccaaccctgtatactcactttgagacaga 146
| || || ||||| || || || ||||||||||||||
Sbjct: 61 ctttccttccaacgctctacacccactttgagacaga 97
>gb|CF230847.1|CF230847 PtaC0014A4A0402 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 702
Score = 73.8 bits (37), Expect = 5e-012
Identities = 136/169 (80%)
Strand = Plus / Plus
Query: 68 gagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgt 127
|||||||||| || ||||||| |||||| |||| ||||||||||| || || | |
Sbjct: 71 gagctcagacagaaagggagattttgcagttgttggatcatccatttctgccgactttat 130
Query: 128 atactcactttgagacagacaagttttcatgcttggttatggaattctgccctggagggg 187
||||||| ||||||||||||| || ||||| ||||||||||||| || || || || |
Sbjct: 131 atactcattttgagacagacagattctcatgtttggttatggaatattgtccagggggtg 190
Query: 188 atcttcacactcttcgccaaaggcagcctggaaaatatttttcagagca 236
||||||||||||| | ||| | || ||||||||| ||||||| |||||
Sbjct: 191 atcttcacactctgaggcaacgacaacctggaaaacatttttccgagca 239
>gb|DV465821.1|DV465821 MTUNUL1.P43.F01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 837
Score = 71.9 bits (36), Expect = 2e-011
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 101 tggaccatccatttctaccaaccctgtatactcactttgagacagacaagttttcatgct 160
|||| ||||||||||| || || |||||||||| ||||||||||||| || ||||| |
Sbjct: 259 tggatcatccatttctgccgactttgtatactcattttgagacagacagattctcatgtt 318
Query: 161 tggttatggaattctgccctggaggggatcttcacactct 200
|||| ||||||| ||| || ||||| ||||| ||||||||
Sbjct: 319 tggtaatggaatactgtccaggaggtgatctgcacactct 358
>gb|DV463218.1|DV463218 MTUNUL1.P13.B10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 825
Score = 63.9 bits (32), Expect = 5e-009
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 101 tggaccatccatttctaccaaccctgtatactcactttgagacagacaagttttcatgct 160
|||| ||||||||||| || || | |||||||| ||||||||||||| || ||||| |
Sbjct: 295 tggatcatccatttctgccgactttatatactcattttgagacagacagattctcatgtt 354
Query: 161 tggttatggaattctgccctggaggggatcttcacactcttcgccaaaggcagcctggaa 220
|||||||||||| || || || || |||||||||||| | | ||| | || |||||||
Sbjct: 355 tggttatggaatattgtccagggggtgatcttcacactttgaggcaacgacaacctggaa 414
Query: 221 aatatttttcagagca 236
|| ||||||| |||||
Sbjct: 415 aacatttttccgagca 430
>gb|BI136266.1|BI136266 F065P78Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 485
Score = 52.0 bits (26), Expect = 2e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 49 agtcggaagaagctgcttcgagctcagaccgagcgggagatcctgcagtccctggaccat 108
||||| |||||||||||||| |||||||| || | || || |||| || |||||||||
Sbjct: 321 agtcgcaagaagctgcttcgggctcagacagaaagagaaatattgcaatctctggaccat 380
Query: 109 ccatttctaccaaccctgtatactcactttgagacaga 146
|| || || ||||| || || || ||||||||||||||
Sbjct: 381 cctttccttccaactctctacacccactttgagacaga 418
>gb|CN518806.1|CN518806 GQ0102.B3_C22 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_C22 5', mRNA sequence
Length = 528
Score = 50.1 bits (25), Expect = 7e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 106 catccatttctaccaaccctgtatactcactttgagacagacaagttttcatgcttggtt 165
||||||||||| || || |||||||||| ||||||||||||| || ||||| |||||
Sbjct: 346 catccatttctgccgactttgtatactcattttgagacagacagattctcatgtttggta 405
Query: 166 atgga 170
|||||
Sbjct: 406 atgga 410
>gb|BI136871.1|BI136871 F075P74Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 461
Score = 44.1 bits (22), Expect = 0.005
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 49 agtcggaagaagctgcttcgagctcagaccgagcgggagatcctgcagtccctggaccat 108
||||| |||||||||||||| |||||||| || | || || ||| || |||||||||
Sbjct: 311 agtcgcaagaagctgcttcgggctcagacagaaagagaaatatagcaatctctggaccat 370
Query: 109 ccatttctaccaaccctgtatactcactttgagacaga 146
|| || || ||||| || || || ||||||||||||||
Sbjct: 371 cctttccttccaactctctacacccactttgagacaga 408
>gb|BU836496.1|BU836496 T087C12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 724
Score = 44.1 bits (22), Expect = 0.005
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||| || || ||||| ||||| ||| |||| |||||||| || | |||||
Sbjct: 7 tatgttgctgaagttcttcttgctttggagtacttgcacatgcttggagttgtctaccgg 66
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgct 359
||||| ||||| ||||| | || ||||| ||||||||||| || |||||
Sbjct: 67 gatctaaaaccggagaacattcttgttcgagaagatggccatattatgct 116
>gb|DN499789.1|DN499789 T087C12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T087C12 5', mRNA sequence
Length = 852
Score = 44.1 bits (22), Expect = 0.005
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 250 tatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatataccgt 309
||||| ||||| || || ||||| ||||| ||| |||| |||||||| || | |||||
Sbjct: 6 tatgttgctgaagttcttcttgctttggagtacttgcacatgcttggagttgtctaccgg 65
Query: 310 gatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgct 359
||||| ||||| ||||| | || ||||| ||||||||||| || |||||
Sbjct: 66 gatctaaaaccggagaacattcttgttcgagaagatggccatattatgct 115
>gb|BU809188.1|BU809188 UL54PG11 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 467
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 313 cttaaaccagagaatgtcct 332
||||||||||||||||||||
Sbjct: 10 cttaaaccagagaatgtcct 29
>gb|DN500469.1|DN500469 UL54PG11.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL54PG11 5',
mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 313 cttaaaccagagaatgtcct 332
||||||||||||||||||||
Sbjct: 10 cttaaaccagagaatgtcct 29
>gb|CN518092.1|CN518092 GQ0092.B3_N15 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_N15 5', mRNA sequence
Length = 573
Score = 38.2 bits (19), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 49 agtcggaagaagctgcttcgagctcag 75
||||| |||||||||||||| ||||||
Sbjct: 483 agtcgcaagaagctgcttcgggctcag 509
>gb|DN490490.1|DN490490 UL54PG11.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL54PG11 3',
mRNA sequence
Length = 603
Score = 38.2 bits (19), Expect = 0.28
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 314 ttaaaccagagaatgtcct 332
|||||||||||||||||||
Sbjct: 591 ttaaaccagagaatgtcct 573
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,029
Number of Sequences: 369679
Number of extensions: 51029
Number of successful extensions: 14963
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14939
Number of HSP's gapped (non-prelim): 20
length of query: 457
length of database: 203,408,664
effective HSP length: 18
effective length of query: 439
effective length of database: 196,754,442
effective search space: 86375200038
effective search space used: 86375200038
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)