BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN519694.1|CN519694 GQ0104.B3_A15 GQ010 Populus trichoca... 58 4e-007
gb|CV235722.1|CV235722 WS01221.B21_F11 PT-GT-FL-A-3 Populus... 58 4e-007
gb|DT473521.1|DT473521 WS01229.BR_O05 PT-GT-FL-A-3 Populus ... 58 4e-007
gb|DT476527.1|DT476527 WS01229.B21_O05 PT-GT-FL-A-3 Populus... 58 4e-007
gb|CV262757.1|CV262757 WS0202.B21_G23 PTxN-IB-N-A-11 Populu... 52 2e-005
gb|CV263502.1|CV263502 WS02022.B21_A13 PTxN-IB-N-A-11 Popul... 52 2e-005
gb|AJ780406.1|AJ780406 AJ780406 Populus euphratica leaf 3-6... 38 0.36
>gb|CN519694.1|CN519694 GQ0104.B3_A15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_A15 5', mRNA sequence
Length = 774
Score = 58.0 bits (29), Expect = 4e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 358 tctcatacttgacatccaagccatccttcttcatctcattgatccatattcccattgcga 417
||||||| ||||| || || || ||||| ||||||||| ||||| || |||||||| |
Sbjct: 617 tctcatatttgacttctaaaccctcctttttcatctcagcaatccagatacccattgcta 558
Query: 418 catcctccagcttgaacatctttaa 442
||||||| ||||| |||||||||||
Sbjct: 557 catcctctagcttaaacatctttaa 533
Score = 44.1 bits (22), Expect = 0.006
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 507 ccatgcgcccagggaggataactctcctcaggccattcctcaggggttatgtaccacttg 566
||||| |||||||| || || |||| |||| ||||||||||||| | || |||||||||
Sbjct: 468 ccatgtgcccagggggggtaggtctcttcagaccattcctcagggctaatataccacttg 409
Query: 567 ct 568
||
Sbjct: 408 ct 407
>gb|CV235722.1|CV235722 WS01221.B21_F11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_F11 3', mRNA sequence
Length = 633
Score = 58.0 bits (29), Expect = 4e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 358 tctcatacttgacatccaagccatccttcttcatctcattgatccatattcccattgcga 417
||||||| ||||| || || || ||||| ||||||||| ||||| || |||||||| |
Sbjct: 480 tctcatatttgacttctaaaccctcctttttcatctcagcaatccagatacccattgcta 539
Query: 418 catcctccagcttgaacatctttaa 442
||||||| ||||| |||||||||||
Sbjct: 540 catcctctagcttaaacatctttaa 564
>gb|DT473521.1|DT473521 WS01229.BR_O05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_O05 5', mRNA sequence
Length = 873
Score = 58.0 bits (29), Expect = 4e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 358 tctcatacttgacatccaagccatccttcttcatctcattgatccatattcccattgcga 417
||||||| ||||| || || || ||||| ||||||||| ||||| || |||||||| |
Sbjct: 393 tctcatatttgacttctaaaccctcctttttcatctcagcaatccagatacccattgcta 334
Query: 418 catcctccagcttgaacatctttaa 442
||||||| ||||| |||||||||||
Sbjct: 333 catcctctagcttaaacatctttaa 309
Score = 52.0 bits (26), Expect = 2e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 507 ccatgcgcccagggaggataactctcctcaggccattcctcaggggttatgtaccacttg 566
||||| |||||||| ||||| |||| |||| ||||||||||||| | || |||||||||
Sbjct: 244 ccatgtgcccaggggggataggtctcttcagaccattcctcagggctaatataccacttg 185
Query: 567 ct 568
||
Sbjct: 184 ct 183
>gb|DT476527.1|DT476527 WS01229.B21_O05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_O05 3', mRNA sequence
Length = 857
Score = 58.0 bits (29), Expect = 4e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 358 tctcatacttgacatccaagccatccttcttcatctcattgatccatattcccattgcga 417
||||||| ||||| || || || ||||| ||||||||| ||||| || |||||||| |
Sbjct: 480 tctcatatttgacttctaaaccctcctttttcatctcagcaatccagatacccattgcta 539
Query: 418 catcctccagcttgaacatctttaa 442
||||||| ||||| |||||||||||
Sbjct: 540 catcctctagcttaaacatctttaa 564
Score = 52.0 bits (26), Expect = 2e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 507 ccatgcgcccagggaggataactctcctcaggccattcctcaggggttatgtaccacttg 566
||||| |||||||| ||||| |||| |||| ||||||||||||| | || |||||||||
Sbjct: 629 ccatgtgcccaggggggataggtctcttcagaccattcctcagggctaatataccacttg 688
Query: 567 ct 568
||
Sbjct: 689 ct 690
>gb|CV262757.1|CV262757 WS0202.B21_G23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_G23 3', mRNA sequence
Length = 768
Score = 52.0 bits (26), Expect = 2e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 507 ccatgcgcccagggaggataactctcctcaggccattcctcaggggttatgtaccacttg 566
||||| |||||||| ||||| |||| |||| ||||||||||||| | || |||||||||
Sbjct: 639 ccatgtgcccaggggggataggtctcttcagaccattcctcagggctaatataccacttg 698
Query: 567 ct 568
||
Sbjct: 699 ct 700
Score = 50.1 bits (25), Expect = 9e-005
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 358 tctcatacttgacatccaagccatccttcttcatctcattgatccatattcccattgcga 417
||||||| ||||| || || || ||||| ||||| ||| ||||| || |||||||| |
Sbjct: 490 tctcatatttgacttctaaaccctcctttttcatttcagcaatccagatacccattgcta 549
Query: 418 catcctccagcttgaacatctttaa 442
||||||| ||||| |||||||||||
Sbjct: 550 catcctctagcttaaacatctttaa 574
>gb|CV263502.1|CV263502 WS02022.B21_A13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_A13 3', mRNA sequence
Length = 768
Score = 52.0 bits (26), Expect = 2e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 507 ccatgcgcccagggaggataactctcctcaggccattcctcaggggttatgtaccacttg 566
||||| |||||||| ||||| |||| |||| ||||||||||||| | || |||||||||
Sbjct: 639 ccatgtgcccaggggggataggtctcttcagaccattcctcagggctaatataccacttg 698
Query: 567 ct 568
||
Sbjct: 699 ct 700
Score = 50.1 bits (25), Expect = 9e-005
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 358 tctcatacttgacatccaagccatccttcttcatctcattgatccatattcccattgcga 417
||||||| ||||| || || || ||||| ||||| ||| ||||| || |||||||| |
Sbjct: 490 tctcatatttgacttctaaaccctcctttttcatttcagcaatccagatacccattgcta 549
Query: 418 catcctccagcttgaacatctttaa 442
||||||| ||||| |||||||||||
Sbjct: 550 catcctctagcttaaacatctttaa 574
>gb|AJ780406.1|AJ780406 AJ780406 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900007D10F1, mRNA sequence
Length = 512
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59 aacttgaagatatccaaaa 77
|||||||||||||||||||
Sbjct: 253 aacttgaagatatccaaaa 235
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,611
Number of Sequences: 369679
Number of extensions: 82611
Number of successful extensions: 22467
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22449
Number of HSP's gapped (non-prelim): 18
length of query: 577
length of database: 203,408,664
effective HSP length: 19
effective length of query: 558
effective length of database: 196,384,763
effective search space: 109582697754
effective search space used: 109582697754
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)