BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG22g05.yg.2.1
(681 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF231155.1|CF231155 PtaC0018A8A0802 Poplar cDNA library ... 50 1e-004
gb|BU870514.1|BU870514 Q013E03 Populus flower cDNA library ... 46 0.002
gb|CK096508.1|CK096508 UB17CPA10.3pR Populus active cambium... 46 0.002
gb|CK106323.1|CK106323 UB17CPA10.5pR Populus active cambium... 46 0.002
gb|CV265986.1|CV265986 WS02028.B21_M21 PTxN-IB-N-A-11 Popul... 46 0.002
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.027
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.11
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.11
gb|DT492987.1|DT492987 WS02553.C21_B03 PT-MB-N-A-15 Populus... 40 0.11
gb|BI125149.1|BI125149 I056P50P Populus leaf cDNA library P... 38 0.42
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.42
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.42
gb|CK097505.1|CK097505 UB53CPA10.3pR Populus active cambium... 38 0.42
gb|CK104887.1|CK104887 I062P18.5pR Populus senescing leaves... 38 0.42
gb|AJ769544.1|AJ769544 AJ769544 Populus euphratica leaf 3-6... 38 0.42
gb|CV276549.1|CV276549 WS0141.B21_C06 PTxD-IL-A-5 Populus t... 38 0.42
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.42
>gb|CF231155.1|CF231155 PtaC0018A8A0802 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 90 gaaagcccaaagtctgccacttttgctctcatgttcttgtctaggagaatgtt 142
||||||||||| |||| |||||||||||||| || |||||||||| |||||
Sbjct: 253 gaaagcccaaaatctgaaacttttgctctcatattgatgtctaggaggatgtt 201
>gb|BU870514.1|BU870514 Q013E03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 380
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 96 ccaaagtctgccacttttgctctcatg 122
||||||||||||||||| |||||||||
Sbjct: 341 ccaaagtctgccactttggctctcatg 315
>gb|CK096508.1|CK096508 UB17CPA10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB17CPA10 3', mRNA sequence
Length = 836
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 ccaaagtctgccacttttgctctcatg 122
||||||||||||||||| |||||||||
Sbjct: 558 ccaaagtctgccactttggctctcatg 584
>gb|CK106323.1|CK106323 UB17CPA10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB17CPA10 5', mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 96 ccaaagtctgccacttttgctctcatg 122
||||||||||||||||| |||||||||
Sbjct: 525 ccaaagtctgccactttggctctcatg 499
>gb|CV265986.1|CV265986 WS02028.B21_M21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_M21 3', mRNA sequence
Length = 737
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 ccaaagtctgccacttttgctctcatg 122
||||||||||||||||| |||||||||
Sbjct: 608 ccaaagtctgccactttggctctcatg 634
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtact 657
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtac 625
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtac 289
>gb|DT492987.1|DT492987 WS02553.C21_B03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_B03 3', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.11
Identities = 79/98 (80%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 45 cctcgaactatacttgacacatg---agacccatccactgcaggtttcgaaagcccaaag 101
||||||||||| ||||| ||||| || ||||| |||||| |||| ||||| |||||
Sbjct: 661 cctcgaactatgcttgagacatgtgaagctccatctactgcaagttttgaaaggccaaaa 602
Query: 102 tctgccacttttgctctcatgttcttgtctaggagaat 139
|| || || || ||||||||||| ||||| || |||||
Sbjct: 601 tccgcaaccttcgctctcatgtttttgtcaagaagaat 564
>gb|BI125149.1|BI125149 I056P50P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 548
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaa 39
|||||||||||||| ||||||||
Sbjct: 59 gtactctgggtccaagtatccaa 37
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CK097505.1|CK097505 UB53CPA10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB53CPA10 3', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 95 cccaaagtctgccacttttgctc 117
|||||||||||||||||| ||||
Sbjct: 787 cccaaagtctgccactttggctc 809
>gb|CK104887.1|CK104887 I062P18.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I062P18 5', mRNA sequence
Length = 631
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaa 39
|||||||||||||| ||||||||
Sbjct: 553 gtactctgggtccaagtatccaa 531
>gb|AJ769544.1|AJ769544 AJ769544 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000009B10F1, mRNA sequence
Length = 417
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtactct 23
|||||||||||||||||||
Sbjct: 417 ccgcccgggcaggtactct 399
>gb|CV276549.1|CV276549 WS0141.B21_C06 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_C06 3', mRNA sequence
Length = 771
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 394 tcacctcattcaagaattctctgattccctg 424
||||||||||| |||||||||||||||||
Sbjct: 434 tcacctcattcgtaaattctctgattccctg 464
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,986
Number of Sequences: 369679
Number of extensions: 63986
Number of successful extensions: 16871
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16846
Number of HSP's gapped (non-prelim): 25
length of query: 681
length of database: 203,408,664
effective HSP length: 19
effective length of query: 662
effective length of database: 196,384,763
effective search space: 130006713106
effective search space used: 130006713106
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)