BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCG16f05.yg.2.1
         (585 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU877592.1|BU877592  V036F03 Populus flower cDNA library ...    38   0.36 
gb|DN491950.1|DN491950  V036F03.3pR Populus male catkins cDN...    38   0.36 
gb|DN501897.1|DN501897  V036F03.5pR Populus male catkins cDN...    38   0.36 

>gb|BU877592.1|BU877592 V036F03 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 571

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 79  agaaagggaatgagaaacagaga 101
           |||||||||| ||||||||||||
Sbjct: 172 agaaagggaaagagaaacagaga 194



>gb|DN491950.1|DN491950 V036F03.3pR Populus male catkins cDNA library Populus trichocarpa
           cDNA clone V036F03 3', mRNA sequence
          Length = 643

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 79  agaaagggaatgagaaacagaga 101
           |||||||||| ||||||||||||
Sbjct: 571 agaaagggaaagagaaacagaga 549



>gb|DN501897.1|DN501897 V036F03.5pR Populus male catkins cDNA library Populus trichocarpa
           cDNA clone V036F03 5', mRNA sequence
          Length = 705

 Score = 38.2 bits (19), Expect = 0.36
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 79  agaaagggaatgagaaacagaga 101
           |||||||||| ||||||||||||
Sbjct: 219 agaaagggaaagagaaacagaga 241



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,521
Number of Sequences: 369679
Number of extensions: 67521
Number of successful extensions: 16768
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16765
Number of HSP's gapped (non-prelim): 3
length of query: 585
length of database: 203,408,664
effective HSP length: 19
effective length of query: 566
effective length of database: 196,384,763
effective search space: 111153775858
effective search space used: 111153775858
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)