BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU832251.1|BU832251 T031C10 Populus apical shoot cDNA li... 42 0.025
gb|BU890503.1|BU890503 P037H05 Populus petioles cDNA librar... 42 0.025
gb|CN521393.1|CN521393 GQ0113.B3_P02 GQ011 Populus trichoca... 42 0.025
gb|CV249864.1|CV249864 WS01125.B21_I20 PT-P-FL-A-2 Populus ... 42 0.025
gb|CX659692.1|CX659692 PO01033H03 Poplar SC cDNA library Po... 42 0.025
gb|DT497123.1|DT497123 WS01125.BR_I20 PT-P-FL-A-2 Populus t... 42 0.025
gb|DT519914.1|DT519914 WS02446.B21.1_A16 PTxD-ICC-N-A-14 Po... 42 0.025
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.10
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 38 0.40
gb|CA925966.1|CA925966 MTU7TL.P8.C10 Aspen leaf cDNA Librar... 38 0.40
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 38 0.40
>gb|BU832251.1|BU832251 T031C10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 438 ttgcttgctccagacataaac 418
>gb|BU890503.1|BU890503 P037H05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 596 ttgcttgctccagacataaac 576
>gb|CN521393.1|CN521393 GQ0113.B3_P02 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0113_P02 5', mRNA sequence
Length = 419
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 91 ttgcttgctccagacataaac 71
>gb|CV249864.1|CV249864 WS01125.B21_I20 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I20 3', mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 582 ttgcttgctccagacataaac 602
>gb|CX659692.1|CX659692 PO01033H03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01033H03 5', mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 574 ttgcttgctccagacataaac 554
>gb|DT497123.1|DT497123 WS01125.BR_I20 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I20 5', mRNA sequence
Length = 898
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 599 ttgcttgctccagacataaac 579
>gb|DT519914.1|DT519914 WS02446.B21.1_A16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_A16 3', mRNA sequence
Length = 946
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 579 ttgcttgctccagacataaac 599
|||||||||||||||||||||
Sbjct: 532 ttgcttgctccagacataaac 552
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 616 agtacctgcccgggcggccg 635
||||||||||||||||||||
Sbjct: 657 agtacctgcccgggcggccg 638
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccg 643
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccg 497
>gb|CA925966.1|CA925966 MTU7TL.P8.C10 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 450
Score = 38.2 bits (19), Expect = 0.40
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 613 aaaagtacctgcccgggcggccg 635
||||| |||||||||||||||||
Sbjct: 286 aaaagaacctgcccgggcggccg 308
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccg 271
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,803
Number of Sequences: 369679
Number of extensions: 99803
Number of successful extensions: 27108
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27093
Number of HSP's gapped (non-prelim): 15
length of query: 636
length of database: 203,408,664
effective HSP length: 19
effective length of query: 617
effective length of database: 196,384,763
effective search space: 121169398771
effective search space used: 121169398771
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)