BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 78 5e-013
gb|CA821982.1|CA821982 R02C12 two-month-old roots from clon... 60 1e-007
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 44 0.007
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 44 0.007
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 44 0.007
gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Libr... 40 0.11
gb|BU826729.1|BU826729 UK124TA12 Populus apical shoot cDNA ... 38 0.43
gb|CA925018.1|CA925018 MTU7TL.P12.F02 Aspen leaf cDNA Libra... 38 0.43
gb|CA925916.1|CA925916 MTU7TL.P7.E11 Aspen leaf cDNA Librar... 38 0.43
gb|CK090944.1|CK090944 F034P24.3pR Populus flower cDNA libr... 38 0.43
gb|CV238937.1|CV238937 WS0128.B21.1_L14 PT-GT-FL-A-3 Populu... 38 0.43
gb|CV241719.1|CV241719 WS02513.B21_A24 PT-MB-N-A-15 Populus... 38 0.43
gb|CV257593.1|CV257593 WS0247.B21_B17 PTxD-ICC-N-A-14 Popul... 38 0.43
gb|DT475940.1|DT475940 WS0128.BR_L14 PT-GT-FL-A-3 Populus t... 38 0.43
gb|DT487839.1|DT487839 WS02534.B21_M23 PT-MB-N-A-15 Populus... 38 0.43
gb|DT490775.1|DT490775 WS02545.B21_O18 PT-MB-N-A-15 Populus... 38 0.43
gb|DT492439.1|DT492439 WS02550.C21_L18 PT-MB-N-A-15 Populus... 38 0.43
gb|DT507665.1|DT507665 WS02418.BR_O04 PTxD-ICC-N-A-14 Popul... 38 0.43
gb|DT512292.1|DT512292 WS02418.B21_O04 PTxD-ICC-N-A-14 Popu... 38 0.43
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 77.8 bits (39), Expect = 5e-013
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||| ||||||||| |||||||| ||||| ||||||||||| ||||| |||||||
Sbjct: 25384 cctgaatatatatcttcactgatgttgataacacgagaggccttgctaataccaccccga 25325
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcat 351
||||| || |||| ||| ||||||||||||||||| ||||| |||||
Sbjct: 25324 gttatgtggaaaactctgtcaaaaacatctggatgtccataatgcat 25278
Score = 71.9 bits (36), Expect = 3e-011
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 107 ctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctgatta 166
||||||||||| |||||||| ||||||| ||| || |||||||||| || ||||||||
Sbjct: 26102 ctaagaacttgctcaccattaccaccagaaaccttcccttcaaatacagctatctgattg 26043
Query: 167 agtccaacatccctacctttgccaacct 194
|| |||||||| | |||||||||||||
Sbjct: 26042 agaccaacatctcgtcctttgccaacct 26015
Score = 44.1 bits (22), Expect = 0.007
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 368 ttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgag 427
||||| ||||||||||| || | || ||||| || || |||||||| ||||||||||||
Sbjct: 25174 ttagccagaacacgctggccgagagttacaaagctagtttcctgatttgacataaatgag 25115
Query: 428 gc 429
||
Sbjct: 25114 gc 25113
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 455 acatgctccctaacaccaagaat 477
||||| |||||||||||||||||
Sbjct: 25003 acatgttccctaacaccaagaat 24981
>gb|CA821982.1|CA821982 R02C12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 291
Score = 60.0 bits (30), Expect = 1e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 110 agaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctgattaagt 169
|||||||| || |||||||| || || ||||| |||||||| || |||||||| || |
Sbjct: 219 agaacttgctcgccatttcctcctgccactttcccttcaaaaagggcaatctggtttaac 160
Query: 170 ccaacatccctacctttgccaacctgaatatattcatg 207
||||| || || || || ||||||||||||||||||||
Sbjct: 159 ccaacgtctcttccctttccaacctgaatatattcatg 122
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 311 tgaaaaattctatcaaaaacatctggatgaccatagtg 348
||||||| |||||||| ||||| ||||||||||||||
Sbjct: 483 tgaaaaagcctatcaaatacatccggatgaccatagtg 446
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcc 447
||||||||||| || |||||||| |||||||| | || || || |||||||||||
Sbjct: 402 gtcacaaaactggtttcctgatttgacataaaccatgcaagagatgaaacacttcc 347
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 311 tgaaaaattctatcaaaaacatctggatgaccatagtg 348
||||||| |||||||| ||||| ||||||||||||||
Sbjct: 483 tgaaaaagcctatcaaatacatccggatgaccatagtg 446
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcc 447
||||||||||| || |||||||| |||||||| | || || || |||||||||||
Sbjct: 402 gtcacaaaactggtttcctgatttgacataaaccatgcaagagatgaaacacttcc 347
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 311 tgaaaaattctatcaaaaacatctggatgaccatagtg 348
||||||| |||||||| ||||| ||||||||||||||
Sbjct: 486 tgaaaaagcctatcaaatacatccggatgaccatagtg 449
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcc 447
||||||||||| || |||||||| |||||||| | || || || |||||||||||
Sbjct: 405 gtcacaaaactggtttcctgatttgacataaaccatgcaagagatgaaacacttcc 350
>gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 189
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggtacag 25
||||||||||||| ||||||||||
Sbjct: 189 agcgtggtcgcggccgaggtacag 166
>gb|BU826729.1|BU826729 UK124TA12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 65 aaattctatcaaaaacatc 83
>gb|CA925018.1|CA925018 MTU7TL.P12.F02 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 302
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 182 aaattctatcaaaaacatc 200
>gb|CA925916.1|CA925916 MTU7TL.P7.E11 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 302
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 182 aaattctatcaaaaacatc 200
>gb|CK090944.1|CK090944 F034P24.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F034P24 3', mRNA sequence
Length = 791
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 541 aaattctatcaaaaacatc 523
>gb|CV238937.1|CV238937 WS0128.B21.1_L14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_L14 3', mRNA sequence
Length = 695
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 555 aaattctatcaaaaacatc 537
>gb|CV241719.1|CV241719 WS02513.B21_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_A24 3', mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 537 aaattctatcaaaaacatc 519
>gb|CV257593.1|CV257593 WS0247.B21_B17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_B17 3', mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 552 aaattctatcaaaaacatc 534
>gb|DT475940.1|DT475940 WS0128.BR_L14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_L14 5', mRNA sequence
Length = 360
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 162 aaattctatcaaaaacatc 180
>gb|DT487839.1|DT487839 WS02534.B21_M23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02534_M23 3', mRNA sequence
Length = 838
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 547 aaattctatcaaaaacatc 529
>gb|DT490775.1|DT490775 WS02545.B21_O18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_O18 3', mRNA sequence
Length = 801
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 558 aaattctatcaaaaacatc 540
>gb|DT492439.1|DT492439 WS02550.C21_L18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_L18 3', mRNA sequence
Length = 852
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 541 aaattctatcaaaaacatc 523
>gb|DT507665.1|DT507665 WS02418.BR_O04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_O04 5', mRNA sequence
Length = 745
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 205 aaattctatcaaaaacatc 223
>gb|DT512292.1|DT512292 WS02418.B21_O04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_O04 3', mRNA sequence
Length = 745
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 315 aaattctatcaaaaacatc 333
|||||||||||||||||||
Sbjct: 541 aaattctatcaaaaacatc 523
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,792
Number of Sequences: 369679
Number of extensions: 64792
Number of successful extensions: 17970
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17930
Number of HSP's gapped (non-prelim): 40
length of query: 697
length of database: 203,408,664
effective HSP length: 19
effective length of query: 678
effective length of database: 196,384,763
effective search space: 133148869314
effective search space used: 133148869314
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)