BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI131657.1|BI131657 G123P87Y Populus cambium cDNA librar... 48 2e-004
gb|BI129484.1|BI129484 G091P27Y Populus cambium cDNA librar... 42 0.012
gb|BI129619.1|BI129619 G093P35Y Populus cambium cDNA librar... 42 0.012
gb|BI131617.1|BI131617 G123P33Y Populus cambium cDNA librar... 42 0.012
gb|BI131633.1|BI131633 G123P53Y Populus cambium cDNA librar... 42 0.012
gb|BU820099.1|BU820099 UA51CPC06 Populus tremula cambium cD... 42 0.012
gb|CA932243.1|CA932243 MTU5CS.P10.E03 Aspen stem cDNA Libra... 42 0.012
gb|CA932252.1|CA932252 MTU5CS.P10.F03 Aspen stem cDNA Libra... 42 0.012
gb|CA932813.1|CA932813 MTU5CS.P17.G08 Aspen stem cDNA Libra... 42 0.012
gb|CA932828.1|CA932828 MTU5CS.P18.A04 Aspen stem cDNA Libra... 42 0.012
gb|CA932877.1|CA932877 MTU5CS.P18.F07 Aspen stem cDNA Libra... 42 0.012
gb|CA932895.1|CA932895 MTU5CS.P18.H07 Aspen stem cDNA Libra... 42 0.012
gb|CA932974.1|CA932974 MTU5CS.P1.H02 Aspen stem cDNA Librar... 42 0.012
gb|CA933144.1|CA933144 MTU5CS.P4.A08 Aspen stem cDNA Librar... 42 0.012
gb|CA933178.1|CA933178 MTU5CS.P4.E02 Aspen stem cDNA Librar... 42 0.012
gb|CA933427.1|CA933427 MTU5CS.P7.H09 Aspen stem cDNA Librar... 42 0.012
gb|CA933712.1|CA933712 MTU3TS.P11.D09 Aspen stem cDNA Libra... 42 0.012
gb|CF118943.1|CF118943 MTU10CS.P11.D12 Aspen stem cDNA Libr... 42 0.012
gb|CF118999.1|CF118999 MTU10CS.P12.B11 Aspen stem cDNA Libr... 42 0.012
gb|CF119276.1|CF119276 MTU10CS.P15.G02 Aspen stem cDNA Libr... 42 0.012
gb|CF119592.1|CF119592 MTU10CS.P3.H02 Aspen stem cDNA Libra... 42 0.012
gb|CF119738.1|CF119738 MTU10CS.P5.G02 Aspen stem cDNA Libra... 42 0.012
gb|CF120071.1|CF120071 MTU10CS.P9.H09 Aspen stem cDNA Libra... 42 0.012
gb|CF233496.1|CF233496 PtaJXO0024C6C0606 Poplar cDNA librar... 42 0.012
gb|CF234998.1|CF234998 PtaJXT0017F5F0511 Poplar cDNA librar... 42 0.012
gb|CF235263.1|CF235263 PtaJXT0020F9F0911 Poplar cDNA librar... 42 0.012
gb|CN517737.1|CN517737 GQ0094.B3_L08 GQ009 Populus trichoca... 42 0.012
gb|CN519255.1|CN519255 GQ0104.B3_D16 GQ010 Populus trichoca... 42 0.012
gb|CK320848.1|CK320848 X9SP07c09 Populus stem seasonal libr... 42 0.012
gb|AJ771680.1|AJ771680 AJ771680 Populus euphratica root 3-6... 42 0.012
gb|AJ772013.1|AJ772013 AJ772013 Populus euphratica root 3-6... 42 0.012
gb|AJ776251.1|AJ776251 AJ776251 Populus euphratica root 3-6... 42 0.012
gb|AJ780505.1|AJ780505 AJ780505 Populus euphratica leaf 3-6... 42 0.012
gb|BP928698.1|BP928698 BP928698 full-length enriched poplar... 42 0.012
gb|BP928788.1|BP928788 BP928788 full-length enriched poplar... 42 0.012
gb|AY341026.1| Populus tremuloides sucrose synthase mRNA, c... 42 0.012
gb|BI127551.1|BI127551 G062P23Y Populus cambium cDNA librar... 40 0.049
gb|BI127798.1|BI127798 G066P14Y Populus cambium cDNA librar... 40 0.049
gb|BI128740.1|BI128740 G080P72Y Populus cambium cDNA librar... 40 0.049
gb|BI130019.1|BI130019 G099P09Y Populus cambium cDNA librar... 40 0.049
gb|BI131388.1|BI131388 G120P19Y Populus cambium cDNA librar... 40 0.049
gb|BI131418.1|BI131418 G120P61Y Populus cambium cDNA librar... 40 0.049
gb|BI131553.1|BI131553 G122P47Y Populus cambium cDNA librar... 40 0.049
gb|BI132253.1|BI132253 G134P04Y Populus cambium cDNA librar... 40 0.049
gb|CF235850.1|CF235850 PtaJXT0027G3G0313 Poplar cDNA librar... 40 0.049
gb|CK103506.1|CK103506 G120P78.5pR Populus tension wood cDN... 40 0.049
>gb|BI131657.1|BI131657 G123P87Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 462
Score = 48.1 bits (24), Expect = 2e-004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatgg 197
||| |||||||||||| ||||||||||| || ||||| |||||
Sbjct: 321 tgcaggccaagcctgatcttatcattggaaattacagtgatgg 363
>gb|BI129484.1|BI129484 G091P27Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 475
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 59 tggccatacctagaaacttacactgaggatgtt 91
>gb|BI129619.1|BI129619 G093P35Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 359
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 177 tggccatacctagaaacttacactgaggatgtt 209
>gb|BI131617.1|BI131617 G123P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 114 tggccatacctagaaacttacactgaggatgtt 146
>gb|BI131633.1|BI131633 G123P53Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 203 tggccatacctagaaacttacactgaggatgtt 235
>gb|BU820099.1|BU820099 UA51CPC06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 224 acaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaac 272
||||| |||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 117 acaagatgggtgtcacacagtgcactattgcccatgccttggagaaaac 165
>gb|CA932243.1|CA932243 MTU5CS.P10.E03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA932252.1|CA932252 MTU5CS.P10.F03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA932813.1|CA932813 MTU5CS.P17.G08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA932828.1|CA932828 MTU5CS.P18.A04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA932877.1|CA932877 MTU5CS.P18.F07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA932895.1|CA932895 MTU5CS.P18.H07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA932974.1|CA932974 MTU5CS.P1.H02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA933144.1|CA933144 MTU5CS.P4.A08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 391
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA933178.1|CA933178 MTU5CS.P4.E02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA933427.1|CA933427 MTU5CS.P7.H09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CA933712.1|CA933712 MTU3TS.P11.D09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 509
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CF118943.1|CF118943 MTU10CS.P11.D12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 694 tggccatacctagaaacttacactgaggatgtt 726
>gb|CF118999.1|CF118999 MTU10CS.P12.B11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 799
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 694 tggccatacctagaaacttacactgaggatgtt 726
>gb|CF119276.1|CF119276 MTU10CS.P15.G02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CF119592.1|CF119592 MTU10CS.P3.H02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CF119738.1|CF119738 MTU10CS.P5.G02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 176 tggccatacctagaaacttacactgaggatgtt 144
>gb|CF120071.1|CF120071 MTU10CS.P9.H09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 624
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 202 tggccatacctagaaacttacactgaggatgtt 170
>gb|CF233496.1|CF233496 PtaJXO0024C6C0606 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 622
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 71 tggccatacctagaaacttacactgaggatgtt 103
>gb|CF234998.1|CF234998 PtaJXT0017F5F0511 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 116 tggccatacctagaaacttacactgaggatgtt 148
>gb|CF235263.1|CF235263 PtaJXT0020F9F0911 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 13 tggccatacctagaaacttacactgaggatgtt 45
>gb|CN517737.1|CN517737 GQ0094.B3_L08 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_L08 5', mRNA sequence
Length = 487
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 261 tggccatacctagaaacttacactgaggatgtt 293
>gb|CN519255.1|CN519255 GQ0104.B3_D16 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_D16 5', mRNA sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 99 tggccatacctagaaacttacactgaggatgtt 131
>gb|CK320848.1|CK320848 X9SP07c09 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 73 tggccatacctagaaacttacactgaggatgtt 105
>gb|AJ771680.1|AJ771680 AJ771680 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600004C01F1, mRNA sequence
Length = 356
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 224 acaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaac 272
||||| |||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 180 acaagatgggtgtcacacagtgcactattgcccatgccttggagaaaac 228
>gb|AJ772013.1|AJ772013 AJ772013 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600013G04F1, mRNA sequence
Length = 331
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 224 acaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaac 272
||||| |||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 180 acaagatgggtgtcacacagtgcactattgcccatgccttggagaaaac 228
>gb|AJ776251.1|AJ776251 AJ776251 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400011A01F1, mRNA sequence
Length = 225
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 152 tggccatacctagaaacttacactgaggatgtt 184
>gb|AJ780505.1|AJ780505 AJ780505 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900009A04F1, mRNA sequence
Length = 343
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 224 acaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaac 272
||||| |||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 180 acaagatgggtgtcacacagtgcactattgcccatgccttggagaaaac 228
>gb|BP928698.1|BP928698 BP928698 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-087_F11.f 5', mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 224 acaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaac 272
||||| |||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 120 acaagatgggtgtcacacagtgcactattgcccatgccttggagaaaac 168
>gb|BP928788.1|BP928788 BP928788 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-088_J21.f 5', mRNA sequence
Length = 498
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 224 acaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaac 272
||||| |||| ||||| ||||| || || || |||||||||||||||||
Sbjct: 123 acaagatgggtgtcacacagtgcactattgcccatgccttggagaaaac 171
>gb|AY341026.1| Populus tremuloides sucrose synthase mRNA, complete cds
Length = 2792
Score = 42.1 bits (21), Expect = 0.012
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtt 132
||||||||||| || || |||||||||||||||
Sbjct: 1275 tggccatacctagaaacttacactgaggatgtt 1307
>gb|BI127551.1|BI127551 G062P23Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 331 caagcctgatcttatcattggaaattacagtgatgg 366
>gb|BI127798.1|BI127798 G066P14Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 333
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 268 caagcctgatcttatcattggaaattacagtgatgg 303
>gb|BI128740.1|BI128740 G080P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 512
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 295 caagcctgatcttatcattggaaattacagtgatgg 330
>gb|BI130019.1|BI130019 G099P09Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 435
Score = 40.1 bits (20), Expect = 0.049
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 101 ggccatacctggagacatacactgaggatgtt 132
|||||||||| || || |||||||||||||||
Sbjct: 276 ggccatacctagaaacttacactgaggatgtt 307
>gb|BI131388.1|BI131388 G120P19Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 91 caagcctgatcttatcattggaaattacagtgatgg 126
>gb|BI131418.1|BI131418 G120P61Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 412
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 106 caagcctgatcttatcattggaaattacagtgatgg 141
>gb|BI131553.1|BI131553 G122P47Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 462
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 105 caagcctgatcttatcattggaaattacagtgatgg 140
>gb|BI132253.1|BI132253 G134P04Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 321
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 271 caagcctgatcttatcattggaaattacagtgatgg 306
>gb|CF235850.1|CF235850 PtaJXT0027G3G0313 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 270 caagcctgatcttatcattggaaattacagtgatgg 305
>gb|CK103506.1|CK103506 G120P78.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G120P78 5', mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.049
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 162 caagcctgaccttatcattggcaactacagcgatgg 197
||||||||| ||||||||||| || ||||| |||||
Sbjct: 98 caagcctgatcttatcattggaaattacagtgatgg 133
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,150
Number of Sequences: 369679
Number of extensions: 24150
Number of successful extensions: 5921
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5848
Number of HSP's gapped (non-prelim): 73
length of query: 319
length of database: 203,408,664
effective HSP length: 18
effective length of query: 301
effective length of database: 196,754,442
effective search space: 59223087042
effective search space used: 59223087042
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)