BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU872292.1|BU872292 Q041D05 Populus flower cDNA library ... 70 1e-010
gb|BP922291.1|BP922291 BP922291 full-length enriched poplar... 70 1e-010
gb|BP926289.1|BP926289 BP926289 full-length enriched poplar... 70 1e-010
gb|DT506959.1|DT506959 WS02416.BR_P16 PTxD-ICC-N-A-14 Popul... 70 1e-010
gb|CK319184.1|CK319184 X9P07g12 Populus stem seasonal libra... 68 5e-010
gb|CK318873.1|CK318873 X9P04c11 Populus stem seasonal libra... 60 1e-007
gb|DV463545.1|DV463545 MTUNUL1.P17.D01 NUL Populus fremonti... 56 2e-006
gb|AJ771657.1|AJ771657 AJ771657 Populus euphratica root 3-6... 54 7e-006
gb|AJ777101.1|AJ777101 AJ777101 Populus euphratica root 3-6... 50 1e-004
gb|BI127510.1|BI127510 G061P65Y Populus cambium cDNA librar... 48 5e-004
gb|BU897134.1|BU897134 X051H09 Populus wood cDNA library Po... 44 0.007
gb|AJ777349.1|AJ777349 AJ777349 Populus euphratica root 3-6... 42 0.029
gb|DT518041.1|DT518041 WS02436.B21_A12 PTxD-ICC-N-A-14 Popu... 38 0.45
>gb|BU872292.1|BU872292 Q041D05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 617
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
||||||||||||||||| ||||| || || |||||| ||||||| || |||||||| |||
Sbjct: 47 cttgctcaaaatcgtgaagctgccagaaaaagccgattaaggaaaaaagcatatgtacaa 106
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagct 444
|| |||||| ||| |||| || || || ||||| |||||||||||
Sbjct: 107 caactggagagcagccggctcaagctgactcaactggagcaagagct 153
>gb|BP922291.1|BP922291 BP922291 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-006_B11.f 5', mRNA sequence
Length = 522
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
||||||||||||||||| ||||| || || |||||| ||||||| || |||||||| |||
Sbjct: 139 cttgctcaaaatcgtgaagctgccagaaaaagccgattaaggaaaaaagcatatgtacaa 198
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagct 444
|| |||||| ||| |||| || || || ||||| |||||||||||
Sbjct: 199 caactggagagcagccggctgaagctgactcaacttgagcaagagct 245
>gb|BP926289.1|BP926289 BP926289 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-057_J18.f 5', mRNA sequence
Length = 362
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
||||||||||||||||| ||||| || || |||||| ||||||| || |||||||| |||
Sbjct: 137 cttgctcaaaatcgtgaagctgccagaaaaagccgattaaggaaaaaagcatatgtacaa 196
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagct 444
|| |||||| ||| |||| || || || ||||| |||||||||||
Sbjct: 197 caactggagagcagccggctgaagctgactcaacttgagcaagagct 243
>gb|DT506959.1|DT506959 WS02416.BR_P16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_P16 5', mRNA sequence
Length = 820
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
||||||||||||||||| ||||| || || |||||| ||||||| || |||||||| |||
Sbjct: 58 cttgctcaaaatcgtgaagctgccagaaaaagccgattaaggaaaaaagcatatgtacaa 117
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagct 444
|| |||||| ||| |||| || || || ||||| |||||||||||
Sbjct: 118 caactggagagcagccggctgaagctgactcaactggagcaagagct 164
>gb|CK319184.1|CK319184 X9P07g12 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 724
Score = 67.9 bits (34), Expect = 5e-010
Identities = 145/182 (79%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
|||||||||||| | || |||||||| || ||||| | |||||||| |||||||| ||
Sbjct: 92 cttgctcaaaatagagaagctgcaagaaaaagccgtttgaggaagaaagcatatgtccag 151
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcgt 457
||| |||||| |||| || | || || |||||||| || || ||||| ||| | || ||
Sbjct: 152 cagctggagagtagccggttgaagctaacccaactggaacaggagcttcaacgggcacgg 211
Query: 458 cagcagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatggg 517
|||||||| |||||| |||| || |||| || || || || || |||||||||||||||
Sbjct: 212 cagcagggaatttttgtatcaagctcaggagaacaatctcattcaatgagtggaaatggg 271
Query: 518 gc 519
||
Sbjct: 272 gc 273
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 653 tatgatgagatttttaggctcaaaggcaatgcagccaaggcagatgtttt 702
|||||||| |||| ||||| || |||||||||||||||| ||||||||
Sbjct: 407 tatgatgaagttttcaggctgaagagcaatgcagccaaggctgatgtttt 456
>gb|CK318873.1|CK318873 X9P04c11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 689
Score = 60.0 bits (30), Expect = 1e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
|||||||||||| | || |||||||| || ||||| | |||||||| |||||||| ||
Sbjct: 171 cttgctcaaaatagagaagctgcaagaaaaagccgtttgaggaagaaagcatatgtccag 230
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcgt 457
||| |||||| |||| || | || || |||||||| || || ||||| ||| | || ||
Sbjct: 231 cagctggagagtagccggttgaagctaacccaactggaacaggagcttcaacgggcacgg 290
Query: 458 cagcagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatggg 517
|||||||| ||||| |||| || |||| || || || || || |||||||||||||||
Sbjct: 291 cagcagggaattttcgtatcaagctcaggagaacaatctcattcaatgagtggaaatggg 350
Query: 518 gc 519
||
Sbjct: 351 gc 352
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 653 tatgatgagatttttaggctcaaaggcaatgcagccaaggcagatgtttt 702
|||||||| |||| ||||| || |||||||||||||||| ||||||||
Sbjct: 486 tatgatgaagttttcaggctgaagagcaatgcagccaaggctgatgtttt 535
>gb|DV463545.1|DV463545 MTUNUL1.P17.D01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 550
Score = 56.0 bits (28), Expect = 2e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgt 393
||||||||||||||||| ||||| || || |||||| ||||||| || ||||||||
Sbjct: 493 cttgctcaaaatcgtgaagctgccagaaaaagccgattaaggaaaaaagcatatgt 548
>gb|AJ771657.1|AJ771657 AJ771657 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600003G12F1, mRNA sequence
Length = 653
Score = 54.0 bits (27), Expect = 7e-006
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 356 gctgcaaggaagagccgactaaggaagaaggcatatgttcaacagttggagaatagcagg 415
||||||| |||||| ||||| ||||| ||||||||||| || ||| | |||| ||| |||
Sbjct: 301 gctgcaaagaagagtcgactgaggaaaaaggcatatgtccagcagctagagactagtagg 360
Query: 416 ctaaaacttac 426
||||||||||
Sbjct: 361 ataaaacttac 371
>gb|AJ777101.1|AJ777101 AJ777101 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400023B03F1, mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 191 atggcagatgccagccctagaacagaaacatcaacagatgatactgacgacaa 243
|||||||| ||||| |||||||| || || |||||||||||||| || |||||
Sbjct: 490 atggcagaagccagtcctagaactgatacctcaacagatgatacagatgacaa 542
>gb|BI127510.1|BI127510 G061P65Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 487
Score = 48.1 bits (24), Expect = 5e-004
Identities = 102/128 (79%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
|||||||||||| | || |||||||| || ||||| | |||||||| |||||||| ||
Sbjct: 359 cttgctcaaaatagagaagctgcaagaaaaagccgtttgaggaagaaagcatatgtccag 418
Query: 398 cagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcgt 457
||| |||||| |||| || | || || |||||||| || || ||||| ||| | || ||
Sbjct: 419 cagctggagagtagccggttgaagctaacccaactggaacaggagcttcaacgggcacgg 478
Query: 458 cagcaggg 465
||||||||
Sbjct: 479 cagcaggg 486
>gb|BU897134.1|BU897134 X051H09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 573
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 653 tatgatgagatttttaggctcaaaggcaatgcagccaaggcagatgtttt 702
|||||||| |||| ||||| || |||||||||||||||| ||||||||
Sbjct: 131 tatgatgatgttttcaggctgaagagcaatgcagccaaggctgatgtttt 180
>gb|AJ777349.1|AJ777349 AJ777349 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400026G07F1, mRNA sequence
Length = 312
Score = 42.1 bits (21), Expect = 0.029
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
||||| ||||||||||||||||| | || ||||| | |||||||||| ||||||||
Sbjct: 231 cttgcacaaaatcgtgaggctgctcgtaaaagccgtttgcggaagaaggcttatgttcag 290
Query: 398 cagtt 402
|||||
Sbjct: 291 cagtt 295
>gb|DT518041.1|DT518041 WS02436.B21_A12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_A12 3', mRNA sequence
Length = 916
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 678 gcaatgcagccaaggcagatgtt 700
|||||||||||||||| ||||||
Sbjct: 870 gcaatgcagccaaggctgatgtt 848
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,748
Number of Sequences: 369679
Number of extensions: 78748
Number of successful extensions: 23963
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23937
Number of HSP's gapped (non-prelim): 25
length of query: 714
length of database: 203,408,664
effective HSP length: 19
effective length of query: 695
effective length of database: 196,384,763
effective search space: 136487410285
effective search space used: 136487410285
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)