BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.068P15F020924.3.1
         (625 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN492320.1|DN492320  X003G07.3pR Populus wood cDNA librar...    38   0.39 
gb|DT493290.1|DT493290  WS02553.C21_P02 PT-MB-N-A-15 Populus...    38   0.39 
gb|DT496635.1|DT496635  WS01123.BR_P14 PT-P-FL-A-2 Populus t...    38   0.39 
gb|DT520534.1|DT520534  WS02447.B21_N03 PTxD-ICC-N-A-14 Popu...    38   0.39 

>gb|DN492320.1|DN492320 X003G07.3pR Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA clone X003G07 3', mRNA sequence
          Length = 806

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 339 tttgctggtggagttcttcctgc 361
           ||||||||||||||| |||||||
Sbjct: 194 tttgctggtggagtttttcctgc 172



>gb|DT493290.1|DT493290 WS02553.C21_P02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02553_P02 3', mRNA sequence
          Length = 799

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 574 ataaccctgtacaagggccctgc 596
           |||||| ||||||||||||||||
Sbjct: 754 ataaccttgtacaagggccctgc 732



>gb|DT496635.1|DT496635 WS01123.BR_P14 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01123_P14 5', mRNA sequence
          Length = 875

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 574 ataaccctgtacaagggccctgc 596
           |||||| ||||||||||||||||
Sbjct: 626 ataaccttgtacaagggccctgc 648



>gb|DT520534.1|DT520534 WS02447.B21_N03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02447_N03 3', mRNA sequence
          Length = 889

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 574 ataaccctgtacaagggccctgc 596
           |||||| ||||||||||||||||
Sbjct: 769 ataaccttgtacaagggccctgc 747



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,048
Number of Sequences: 369679
Number of extensions: 61048
Number of successful extensions: 18726
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18722
Number of HSP's gapped (non-prelim): 4
length of query: 625
length of database: 203,408,664
effective HSP length: 19
effective length of query: 606
effective length of database: 196,384,763
effective search space: 119009166378
effective search space used: 119009166378
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)