BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.065K11F020919.3.1
         (383 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN518475.1|CN518475  GQ0094.B3_M21 GQ009 Populus trichoca...    46   0.001
gb|CV261655.1|CV261655  WS02017.B21_G06 PTxN-IB-N-A-11 Popul...    46   0.001
gb|CV268093.1|CV268093  WS0204.B21_I16 PTxN-IB-N-A-11 Populu...    46   0.001
gb|CV282847.1|CV282847  WS0185.B21_M05 PTxD-IL-N-A-9 Populus...    46   0.001
gb|CV234989.1|CV234989  WS01217.B21_D18 PT-GT-FL-A-3 Populus...    40   0.059
gb|CV237315.1|CV237315  WS01227.B21.1_G02 PT-GT-FL-A-3 Popul...    40   0.059

>gb|CN518475.1|CN518475 GQ0094.B3_M21 GQ009 Populus trichocarpa x Populus deltoides cDNA
           clone GQ0094_M21 5', mRNA sequence
          Length = 358

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 4   tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacag 62
           ||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 88  tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 146



>gb|CV261655.1|CV261655 WS02017.B21_G06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02017_G06 3', mRNA sequence
          Length = 334

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 4   tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacag 62
           ||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 288 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 230



>gb|CV268093.1|CV268093 WS0204.B21_I16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS0204_I16 3', mRNA sequence
          Length = 851

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 4   tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacag 62
           ||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 288 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 230



>gb|CV282847.1|CV282847 WS0185.B21_M05 PTxD-IL-N-A-9 Populus trichocarpa x Populus
           deltoides cDNA clone WS0185_M05 3', mRNA sequence
          Length = 745

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 4   tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacag 62
           ||||||||||||||||| ||||| || || || || || ||||| || |||||||||||
Sbjct: 288 tggggcgtcctcttcgggttcgggcctgggcttactgttgagacagtggtgctccacag 230



>gb|CV234989.1|CV234989 WS01217.B21_D18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
           WS01217_D18 3', mRNA sequence
          Length = 570

 Score = 40.1 bits (20), Expect = 0.059
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 4   tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcca 59
           ||||||||||| ||||| ||||| || || || || || ||||| |||||||||||
Sbjct: 295 tggggcgtccttttcgggttcgggcctgggcttactgttgagactgtcgtgctcca 240



>gb|CV237315.1|CV237315 WS01227.B21.1_G02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
           WS01227_G02 3', mRNA sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 0.059
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 4   tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcca 59
           ||||||||||| ||||| ||||| || || || || || ||||| |||||||||||
Sbjct: 296 tggggcgtccttttcgggttcgggcctgggcttactgttgagactgtcgtgctcca 241



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,936
Number of Sequences: 369679
Number of extensions: 32936
Number of successful extensions: 8369
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8363
Number of HSP's gapped (non-prelim): 6
length of query: 383
length of database: 203,408,664
effective HSP length: 18
effective length of query: 365
effective length of database: 196,754,442
effective search space: 71815371330
effective search space used: 71815371330
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)