BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.063O07F020916.3.1
         (657 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI121050.1|BI121050  F027P26Y Populus flower cDNA library...    42   0.026
gb|BU880135.1|BU880135  UM41TH06 Populus flower cDNA library...    42   0.026

>gb|BI121050.1|BI121050 F027P26Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
           sequence
          Length = 487

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 291 aatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaa 350
           ||||||||||||||  |  ||||||||||||||||   || ||||| || ||| ||||||
Sbjct: 233 aatatatgggctgaggtgagcatttcatgggaggtgtagaggatgatgaaccagcctcaa 292

                
Query: 351 aacgc 355
           |||||
Sbjct: 293 aacgc 297



>gb|BU880135.1|BU880135 UM41TH06 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 291 aatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaa 350
           ||||||||||||||  |  ||||||||||||||||   || ||||| || ||| ||||||
Sbjct: 282 aatatatgggctgaggtgagcatttcatgggaggtgtagaggatgatgaaccagcctcaa 341

                
Query: 351 aacgc 355
           |||||
Sbjct: 342 aacgc 346



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,780
Number of Sequences: 369679
Number of extensions: 77780
Number of successful extensions: 22419
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22417
Number of HSP's gapped (non-prelim): 2
length of query: 657
length of database: 203,408,664
effective HSP length: 19
effective length of query: 638
effective length of database: 196,384,763
effective search space: 125293478794
effective search space used: 125293478794
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)