BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006E19F020311.3.1
(789 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ771671.1|AJ771671 AJ771671 Populus euphratica root 3-6... 48 5e-004
gb|CV226012.1|CV226012 WS0163.B21_A14 PT-DX-A-7 Populus tri... 38 0.49
gb|CV269517.1|CV269517 WS0208.B21_H14 PTxN-IB-N-A-11 Populu... 38 0.49
gb|CV279287.1|CV279287 WS0131.B21_B02 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV279338.1|CV279338 WS0131.B21_E12 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV279407.1|CV279407 WS0131.B21_K02 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV279434.1|CV279434 WS0131.B21_M04 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV279478.1|CV279478 WS0131.B21_P08 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV279775.1|CV279775 WS0133.B21_E23 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280016.1|CV280016 WS0134.B21_G11 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280071.1|CV280071 WS0134.B21_K12 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280111.1|CV280111 WS0134.B21_N12 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280347.1|CV280347 WS0135.B21_O19 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280518.1|CV280518 WS0136.B21_J21 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280532.1|CV280532 WS0136.B21_K22 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280571.1|CV280571 WS0136.B21_N15 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|CV280668.1|CV280668 WS0137.B21_E05 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|DN496695.1|DN496695 Q007E04.5pR Populus dormant bud cDNA... 38 0.49
gb|DT500989.1|DT500989 WS0131.BR_B02 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT501048.1|DT501048 WS0131.BR_E12 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT501134.1|DT501134 WS0131.BR_K02 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT501168.1|DT501168 WS0131.BR_M04 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT501220.1|DT501220 WS0131.BR_P08 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT501964.1|DT501964 WS01314.BR_O19 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|DT501970.1|DT501970 WS01314.BR_P07 PTxD-IL-FL-A-4 Populu... 38 0.49
gb|DT502531.1|DT502531 WS0133.BR_E23 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT502832.1|DT502832 WS0134.BR_G11 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT502950.1|DT502950 WS0134.BR_N12 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT503229.1|DT503229 WS0135.BR_O19 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT503438.1|DT503438 WS0136.BR_J21 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT503454.1|DT503454 WS0136.BR_K22 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT503501.1|DT503501 WS0136.BR_N15 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT503614.1|DT503614 WS0137.BR_E05 PTxD-IL-FL-A-4 Populus... 38 0.49
gb|DT504835.1|DT504835 WS01314.B21_O19 PTxD-IL-FL-A-4 Popul... 38 0.49
gb|DT504841.1|DT504841 WS01314.B21_P07 PTxD-IL-FL-A-4 Popul... 38 0.49
>gb|AJ771671.1|AJ771671 AJ771671 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600004A03F1, mRNA sequence
Length = 652
Score = 48.1 bits (24), Expect = 5e-004
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 494 ctggtgtatgagaagcagcagaagctaaggattatgatgaaaatgcacggtctgaaggat 553
||||| |||||||| || ||||| ||| |||| |||||||||||||| || || |||
Sbjct: 246 ctggtttatgagaaacaacagaaactacggatcatgatgaaaatgcatgggcttggagat 305
Query: 554 gggccttactggctgatatcttat 577
|||||||| ||| |||| ||||||
Sbjct: 306 gggccttattggatgatttcttat 329
>gb|CV226012.1|CV226012 WS0163.B21_A14 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_A14
3', mRNA sequence
Length = 837
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 296 ggttatgacttcttgggca 278
>gb|CV269517.1|CV269517 WS0208.B21_H14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_H14 3', mRNA sequence
Length = 788
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 260 ggttatgacttcttgggca 242
>gb|CV279287.1|CV279287 WS0131.B21_B02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_B02 3', mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV279338.1|CV279338 WS0131.B21_E12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_E12 3', mRNA sequence
Length = 628
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV279407.1|CV279407 WS0131.B21_K02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_K02 3', mRNA sequence
Length = 623
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV279434.1|CV279434 WS0131.B21_M04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_M04 3', mRNA sequence
Length = 627
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV279478.1|CV279478 WS0131.B21_P08 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_P08 3', mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 212 ggttatgacttcttgggca 194
>gb|CV279775.1|CV279775 WS0133.B21_E23 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0133_E23 3', mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280016.1|CV280016 WS0134.B21_G11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_G11 3', mRNA sequence
Length = 367
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280071.1|CV280071 WS0134.B21_K12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_K12 3', mRNA sequence
Length = 521
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280111.1|CV280111 WS0134.B21_N12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_N12 3', mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280347.1|CV280347 WS0135.B21_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_O19 3', mRNA sequence
Length = 878
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 226 ggttatgacttcttgggca 208
>gb|CV280518.1|CV280518 WS0136.B21_J21 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J21 3', mRNA sequence
Length = 843
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280532.1|CV280532 WS0136.B21_K22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_K22 3', mRNA sequence
Length = 841
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280571.1|CV280571 WS0136.B21_N15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_N15 3', mRNA sequence
Length = 842
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|CV280668.1|CV280668 WS0137.B21_E05 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_E05 3', mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|DN496695.1|DN496695 Q007E04.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q007E04 5', mRNA sequence
Length = 471
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 141 aatttttaaagggttatagacaa 163
||||||||||| |||||||||||
Sbjct: 298 aatttttaaagtgttatagacaa 276
>gb|DT500989.1|DT500989 WS0131.BR_B02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_B02 5', mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 640 ggttatgacttcttgggca 658
>gb|DT501048.1|DT501048 WS0131.BR_E12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_E12 5', mRNA sequence
Length = 841
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 646 ggttatgacttcttgggca 664
>gb|DT501134.1|DT501134 WS0131.BR_K02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_K02 5', mRNA sequence
Length = 702
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 533 ggttatgacttcttgggca 551
>gb|DT501168.1|DT501168 WS0131.BR_M04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_M04 5', mRNA sequence
Length = 784
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 647 ggttatgacttcttgggca 665
>gb|DT501220.1|DT501220 WS0131.BR_P08 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_P08 5', mRNA sequence
Length = 772
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 603 ggttatgacttcttgggca 621
>gb|DT501964.1|DT501964 WS01314.BR_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_O19 5', mRNA sequence
Length = 852
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT501970.1|DT501970 WS01314.BR_P07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_P07 5', mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT502531.1|DT502531 WS0133.BR_E23 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0133_E23 5', mRNA sequence
Length = 857
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 648 ggttatgacttcttgggca 666
>gb|DT502832.1|DT502832 WS0134.BR_G11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_G11 5', mRNA sequence
Length = 765
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT502950.1|DT502950 WS0134.BR_N12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_N12 5', mRNA sequence
Length = 759
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT503229.1|DT503229 WS0135.BR_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_O19 5', mRNA sequence
Length = 852
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT503438.1|DT503438 WS0136.BR_J21 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J21 5', mRNA sequence
Length = 852
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT503454.1|DT503454 WS0136.BR_K22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_K22 5', mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT503501.1|DT503501 WS0136.BR_N15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_N15 5', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT503614.1|DT503614 WS0137.BR_E05 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_E05 5', mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 642 ggttatgacttcttgggca 660
>gb|DT504835.1|DT504835 WS01314.B21_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_O19 3', mRNA sequence
Length = 845
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
>gb|DT504841.1|DT504841 WS01314.B21_P07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_P07 3', mRNA sequence
Length = 846
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ggttatgacttcttgggca 212
|||||||||||||||||||
Sbjct: 211 ggttatgacttcttgggca 193
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,656
Number of Sequences: 369679
Number of extensions: 108656
Number of successful extensions: 27646
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27609
Number of HSP's gapped (non-prelim): 36
length of query: 789
length of database: 203,408,664
effective HSP length: 19
effective length of query: 770
effective length of database: 196,384,763
effective search space: 151216267510
effective search space used: 151216267510
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)