BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU867684.1|BU867684 M103B05 Populus flower cDNA library ... 40 0.10
gb|BU875079.1|BU875079 V002B04 Populus flower cDNA library ... 38 0.41
gb|BU876528.1|BU876528 V021G12 Populus flower cDNA library ... 38 0.41
gb|BU878469.1|BU878469 V047F10 Populus flower cDNA library ... 38 0.41
gb|BU878991.1|BU878991 V054D02 Populus flower cDNA library ... 38 0.41
gb|BU891754.1|BU891754 P054G12 Populus petioles cDNA librar... 38 0.41
gb|CA824286.1|CA824286 R39D06 two-month-old roots from clon... 38 0.41
gb|CB239427.1|CB239427 RSH11B11 two-month-old roots from cl... 38 0.41
gb|CN517420.1|CN517420 GQ0094.B3_F23 GQ009 Populus trichoca... 38 0.41
gb|AJ773352.1|AJ773352 AJ773352 Populus euphratica shoot 3-... 38 0.41
gb|AJ774441.1|AJ774441 AJ774441 Populus euphratica shoot 3-... 38 0.41
gb|CV225764.1|CV225764 WS0162.B21_F07 PT-DX-A-7 Populus tri... 38 0.41
gb|BP928569.1|BP928569 BP928569 full-length enriched poplar... 38 0.41
gb|DN492688.1|DN492688 X031H04.3pR Populus wood cDNA librar... 38 0.41
gb|DN502700.1|DN502700 X031H04.5pR Populus wood cDNA librar... 38 0.41
gb|DT479482.1|DT479482 WS02526.BR_A14 PT-MB-N-A-15 Populus ... 38 0.41
gb|DT488359.1|DT488359 WS02536.B21_D13 PT-MB-N-A-15 Populus... 38 0.41
gb|DT488972.1|DT488972 WS02537.B21_P07 PT-MB-N-A-15 Populus... 38 0.41
gb|DT516083.1|DT516083 WS02430.B21_F17 PTxD-ICC-N-A-14 Popu... 38 0.41
gb|DT518215.1|DT518215 WS02436.B21_I11 PTxD-ICC-N-A-14 Popu... 38 0.41
>gb|BU867684.1|BU867684 M103B05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctgaa 317
||||||||||||||||||||
Sbjct: 191 tcgctgctgctgctgctgaa 172
>gb|BU875079.1|BU875079 V002B04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 663
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 22 tcgctgctgctgctgctga 4
>gb|BU876528.1|BU876528 V021G12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 307
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 22 tcgctgctgctgctgctga 4
>gb|BU878469.1|BU878469 V047F10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 585
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 26 tcgctgctgctgctgctga 8
>gb|BU878991.1|BU878991 V054D02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 24 tcgctgctgctgctgctga 6
>gb|BU891754.1|BU891754 P054G12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 363
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 43 tcgctgctgctgctgctga 25
>gb|CA824286.1|CA824286 R39D06 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 49 tcgctgctgctgctgctga 31
>gb|CB239427.1|CB239427 RSH11B11 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 601
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 49 tcgctgctgctgctgctga 31
>gb|CN517420.1|CN517420 GQ0094.B3_F23 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_F23 5', mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 32 tcgctgctgctgctgctga 14
>gb|AJ773352.1|AJ773352 AJ773352 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300001A10F1, mRNA sequence
Length = 557
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 297 atcgctgctgctgctgctg 315
|||||||||||||||||||
Sbjct: 453 atcgctgctgctgctgctg 435
>gb|AJ774441.1|AJ774441 AJ774441 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300020E03F1, mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 299 cgctgctgctgctgctgaa 317
|||||||||||||||||||
Sbjct: 72 cgctgctgctgctgctgaa 90
>gb|CV225764.1|CV225764 WS0162.B21_F07 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_F07
3', mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 260 tcgctgctgctgctgctga 278
>gb|BP928569.1|BP928569 BP928569 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-085_I03.f 5', mRNA sequence
Length = 384
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 334 gcggcggcggagacgatgacgac 356
|||||||||| ||||||||||||
Sbjct: 42 gcggcggcggcgacgatgacgac 64
>gb|DN492688.1|DN492688 X031H04.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X031H04 3', mRNA sequence
Length = 260
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 233 gctgctgctgctgctgaac 251
>gb|DN502700.1|DN502700 X031H04.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X031H04 5', mRNA sequence
Length = 509
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 28 gctgctgctgctgctgaac 10
>gb|DT479482.1|DT479482 WS02526.BR_A14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02526_A14 5', mRNA sequence
Length = 866
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 28 tcgctgctgctgctgctga 10
>gb|DT488359.1|DT488359 WS02536.B21_D13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_D13 3', mRNA sequence
Length = 535
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 472 gctgctgctgctgctgaac 490
>gb|DT488972.1|DT488972 WS02537.B21_P07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_P07 3', mRNA sequence
Length = 535
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 472 gctgctgctgctgctgaac 490
>gb|DT516083.1|DT516083 WS02430.B21_F17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_F17 3', mRNA sequence
Length = 923
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 225 gctgctgctgctgctgaac 243
>gb|DT518215.1|DT518215 WS02436.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_I11 3', mRNA sequence
Length = 356
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 298 tcgctgctgctgctgctga 316
|||||||||||||||||||
Sbjct: 321 tcgctgctgctgctgctga 339
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,594
Number of Sequences: 369679
Number of extensions: 71594
Number of successful extensions: 27951
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27887
Number of HSP's gapped (non-prelim): 31
length of query: 657
length of database: 203,408,664
effective HSP length: 19
effective length of query: 638
effective length of database: 196,384,763
effective search space: 125293478794
effective search space used: 125293478794
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)