BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI163170.1|AI163170 A034p39u Hybrid aspen plasmid librar... 50 8e-005
gb|AI165319.1|AI165319 A081P18U Hybrid aspen plasmid librar... 50 8e-005
gb|BI130965.1|BI130965 G113P33Y Populus cambium cDNA librar... 50 8e-005
gb|CV226522.1|CV226522 WS0164.B21_I06 PT-DX-A-7 Populus tri... 50 8e-005
gb|CV254823.1|CV254823 WS02411.B21_E17 PTxD-ICC-N-A-14 Popu... 50 8e-005
gb|CX183497.1|CX183497 G02_45-45_14.ab1 leaf inoculated wit... 50 8e-005
gb|DT475955.1|DT475955 WS0128.BR_M11 PT-GT-FL-A-3 Populus t... 50 8e-005
gb|DT499690.1|DT499690 WS9991.BR_B03 PT-P-FL-A-2 Populus tr... 50 8e-005
gb|DT516153.1|DT516153 WS02430.B21_I23 PTxD-ICC-N-A-14 Popu... 50 8e-005
gb|BU837295.1|BU837295 T097B06 Populus apical shoot cDNA li... 46 0.001
gb|CK116665.1|CK116665 B015P39 Hybrid aspen plasmid library... 46 0.001
gb|CF235467.1|CF235467 PtaJXT0023B6B0604 Poplar cDNA librar... 42 0.019
gb|CV238949.1|CV238949 WS0128.B21.1_M11 PT-GT-FL-A-3 Populu... 42 0.019
>gb|AI163170.1|AI163170 A034p39u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 497
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 270 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 329
Query: 294 t 294
|
Sbjct: 330 t 330
>gb|AI165319.1|AI165319 A081P18U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 374
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 229 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 288
Query: 294 t 294
|
Sbjct: 289 t 289
>gb|BI130965.1|BI130965 G113P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 565
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 397 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 456
Query: 294 t 294
|
Sbjct: 457 t 457
>gb|CV226522.1|CV226522 WS0164.B21_I06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_I06
3', mRNA sequence
Length = 862
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 651 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 592
Query: 294 t 294
|
Sbjct: 591 t 591
>gb|CV254823.1|CV254823 WS02411.B21_E17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_E17 3', mRNA sequence
Length = 942
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 664 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 605
Query: 294 t 294
|
Sbjct: 604 t 604
>gb|CX183497.1|CX183497 G02_45-45_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 409 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 468
Query: 294 t 294
|
Sbjct: 469 t 469
>gb|DT475955.1|DT475955 WS0128.BR_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M11 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 315 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 374
Query: 294 t 294
|
Sbjct: 375 t 375
>gb|DT499690.1|DT499690 WS9991.BR_B03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_H14 5', mRNA sequence
Length = 535
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 315 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 374
Query: 294 t 294
|
Sbjct: 375 t 375
>gb|DT516153.1|DT516153 WS02430.B21_I23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_I23 3', mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 8e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 185 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 126
Query: 294 t 294
|
Sbjct: 125 t 125
>gb|BU837295.1|BU837295 T097B06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 569
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgg 276
||||||| ||| | ||||| |||||||| ||||||||||||||
Sbjct: 417 tgtactgtaagcctcactttgagcagctgttcaaggagaccgg 459
>gb|CK116665.1|CK116665 B015P39 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B015P39 5', mRNA sequence
Length = 386
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgg 276
||||||| ||| | ||||| |||||||| ||||||||||||||
Sbjct: 270 tgtactgtaagcctcactttgagcagctgttcaaggagaccgg 312
>gb|CF235467.1|CF235467 PtaJXT0023B6B0604 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.019
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| || ||||| |||||||||||||| | |||| ||||||||
Sbjct: 506 tgtactgtaagcctcactttgaccagctgttcaaggagaccggtaacttcaacaagaact 565
Query: 294 t 294
|
Sbjct: 566 t 566
>gb|CV238949.1|CV238949 WS0128.B21.1_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M11 3', mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.019
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 254 gagcagctcttcaaggagaccgggagcttctccaagaactt 294
|||||||| |||||||||||||| | |||| |||||||||
Sbjct: 642 gagcagctgttcaaggagaccggtaacttcaacaagaactt 602
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,636
Number of Sequences: 369679
Number of extensions: 27636
Number of successful extensions: 8521
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8508
Number of HSP's gapped (non-prelim): 13
length of query: 487
length of database: 203,408,664
effective HSP length: 19
effective length of query: 468
effective length of database: 196,384,763
effective search space: 91908069084
effective search space used: 91908069084
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)