BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ23f06.xg.2.1
(683 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU879253.1|BU879253 V057H05 Populus flower cDNA library ... 40 0.11
gb|DN502186.1|DN502186 V057H05.5pR Populus male catkins cDN... 40 0.11
>gb|BU879253.1|BU879253 V057H05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 248 tcaatggaaaccacaagaaa 267
||||||||||||||||||||
Sbjct: 284 tcaatggaaaccacaagaaa 265
>gb|DN502186.1|DN502186 V057H05.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V057H05 5', mRNA sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 248 tcaatggaaaccacaagaaa 267
||||||||||||||||||||
Sbjct: 253 tcaatggaaaccacaagaaa 234
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,304
Number of Sequences: 369679
Number of extensions: 56304
Number of successful extensions: 13272
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13270
Number of HSP's gapped (non-prelim): 2
length of query: 683
length of database: 203,408,664
effective HSP length: 19
effective length of query: 664
effective length of database: 196,384,763
effective search space: 130399482632
effective search space used: 130399482632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)