BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBD3a09.xg.3.1
         (1105 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU881837.1|BU881837  UM68TB10 Populus flower cDNA library...    48   7e-004
gb|DN484173.1|DN484173  C028P10.3pR Populus strain T89 leave...    48   7e-004
gb|BI138953.1|BI138953  F119P79Y Populus flower cDNA library...    40   0.18 
gb|BU896154.1|BU896154  X036D08 Populus wood cDNA library Po...    40   0.18 
gb|CX187249.1|CX187249  A04_45-69_02.ab1 leaf inoculated wit...    40   0.18 

>gb|BU881837.1|BU881837 UM68TB10 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 337

 Score = 48.1 bits (24), Expect = 7e-004
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 685 ctgaaggacatgatgaagacagaggccgggaaaaggagagctgagaaaaggcataggttc 744
           ||||||||  ||||||| ||| |||| ||| | ||||| ||||||| ||| || | ||||
Sbjct: 65  ctgaaggatttgatgaaaacaaaggctgggcagaggagggctgagagaagacacaagttc 124

                       
Query: 745 atggaggaattt 756
           ||||||||||||
Sbjct: 125 atggaggaattt 136



>gb|DN484173.1|DN484173 C028P10.3pR Populus strain T89 leaves Populus tremula x Populus
           tremuloides cDNA clone C028P10 3', mRNA sequence
          Length = 642

 Score = 48.1 bits (24), Expect = 7e-004
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 685 ctgaaggacatgatgaagacagaggccgggaaaaggagagctgagaaaaggcataggttc 744
           ||||||||  ||||||| ||| |||||||| | ||||| ||||||| ||| || | ||||
Sbjct: 230 ctgaaggatttgatgaaaacaaaggccgggcagaggagggctgagagaagacacaagttc 171

                   
Query: 745 atggagga 752
           ||||||||
Sbjct: 170 atggagga 163



>gb|BI138953.1|BI138953 F119P79Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
           sequence
          Length = 507

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 714 gaaaaggagagctgagaaaa 733
           ||||||||||||||||||||
Sbjct: 292 gaaaaggagagctgagaaaa 273



>gb|BU896154.1|BU896154 X036D08 Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 714 gaaaaggagagctgagaaaa 733
           ||||||||||||||||||||
Sbjct: 161 gaaaaggagagctgagaaaa 180



>gb|CX187249.1|CX187249 A04_45-69_02.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 714 gaaaaggagagctgagaaaa 733
           ||||||||||||||||||||
Sbjct: 240 gaaaaggagagctgagaaaa 221



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 149,374
Number of Sequences: 369679
Number of extensions: 149374
Number of successful extensions: 43632
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43626
Number of HSP's gapped (non-prelim): 6
length of query: 1105
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1086
effective length of database: 196,384,763
effective search space: 213273852618
effective search space used: 213273852618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)