BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI072481.1|BI072481 C077P06U Populus strain T89 leaves P... 44 0.005
gb|BU825138.1|BU825138 UK104TB12 Populus apical shoot cDNA ... 44 0.005
gb|BU826132.1|BU826132 UK117TA01 Populus apical shoot cDNA ... 44 0.005
gb|BU826306.1|BU826306 UK119TA12 Populus apical shoot cDNA ... 44 0.005
gb|BU826356.1|BU826356 UK119TF07 Populus apical shoot cDNA ... 44 0.005
gb|BU826397.1|BU826397 UK120TB09 Populus apical shoot cDNA ... 44 0.005
gb|BU826435.1|BU826435 UK120TF03 Populus apical shoot cDNA ... 44 0.005
gb|BU826622.1|BU826622 UK122TG09 Populus apical shoot cDNA ... 44 0.005
gb|BU826981.1|BU826981 UK127TA11 Populus apical shoot cDNA ... 44 0.005
gb|BU827043.1|BU827043 UK127TG06 Populus apical shoot cDNA ... 44 0.005
gb|BU827090.1|BU827090 UK128TD01 Populus apical shoot cDNA ... 44 0.005
gb|BU828387.1|BU828387 K022P24P Populus apical shoot cDNA l... 44 0.005
gb|BU834936.1|BU834936 T067E04 Populus apical shoot cDNA li... 44 0.005
gb|BU862048.1|BU862048 S010F12 Populus imbibed seed cDNA li... 44 0.005
gb|BU863137.1|BU863137 S024E03 Populus imbibed seed cDNA li... 44 0.005
gb|BU866607.1|BU866607 S068G01 Populus imbibed seed cDNA li... 44 0.005
gb|BU867745.1|BU867745 M103G09 Populus flower cDNA library ... 44 0.005
gb|BU888068.1|BU888068 P003C09 Populus petioles cDNA librar... 44 0.005
gb|BU889047.1|BU889047 P016A08 Populus petioles cDNA librar... 44 0.005
gb|BU893566.1|BU893566 P079E05 Populus petioles cDNA librar... 44 0.005
gb|CA926637.1|CA926637 MTU6CR.P17.D01 Aspen root cDNA Libra... 44 0.005
gb|CA927328.1|CA927328 MTU6CR.P7.F07 Aspen root cDNA Librar... 44 0.005
gb|AJ777196.1|AJ777196 AJ777196 Populus euphratica root 3-6... 44 0.005
gb|AJ777522.1|AJ777522 AJ777522 Populus euphratica root 3-6... 44 0.005
gb|DT475968.1|DT475968 WS0128.BR_M24 PT-GT-FL-A-3 Populus t... 44 0.005
gb|DT509401.1|DT509401 WS02423.BR_K04 PTxD-ICC-N-A-14 Popul... 44 0.005
gb|BI072850.1|BI072850 C089P40U Populus strain T89 leaves P... 42 0.021
gb|CK115939.1|CK115939 Y017E03 Populus infected leaf substr... 42 0.021
gb|BI073084.1|BI073084 C092P56U Populus strain T89 leaves P... 40 0.085
gb|BU815034.1|BU815034 N036D03 Populus bark cDNA library Po... 40 0.085
gb|BU878035.1|BU878035 V042D07 Populus flower cDNA library ... 40 0.085
gb|DT473223.1|DT473223 WS01228.BR_P13 PT-GT-FL-A-3 Populus ... 40 0.085
gb|DT476275.1|DT476275 WS01228.B21_P13 PT-GT-FL-A-3 Populus... 40 0.085
gb|BU809047.1|BU809047 UL53A06 Populus leaf cDNA library Po... 38 0.33
gb|BU892507.1|BU892507 P064F12 Populus petioles cDNA librar... 38 0.33
>gb|BI072481.1|BI072481 C077P06U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 339
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 266 ttatcatcgatacaaggaggacatacaattgatg 299
>gb|BU825138.1|BU825138 UK104TB12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 290 ttatcatcgatacaaggaggacatacaattgatg 323
>gb|BU826132.1|BU826132 UK117TA01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 493
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 287 ttatcatcgatacaaggaggacatacaattgatg 320
>gb|BU826306.1|BU826306 UK119TA12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 289 ttatcatcgatacaaggaggacatacaattgatg 322
>gb|BU826356.1|BU826356 UK119TF07 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 619
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 293 ttatcatcgatacaaggaggacatacaattgatg 326
>gb|BU826397.1|BU826397 UK120TB09 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 287 ttatcatcgatacaaggaggacatacaattgatg 320
>gb|BU826435.1|BU826435 UK120TF03 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 279 ttatcatcgatacaaggaggacatacaattgatg 312
>gb|BU826622.1|BU826622 UK122TG09 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 287 ttatcatcgatacaaggaggacatacaattgatg 320
>gb|BU826981.1|BU826981 UK127TA11 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 537
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 274 ttatcatcgatacaaggaggacatacaattgatg 307
>gb|BU827043.1|BU827043 UK127TG06 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 287 ttatcatcgatacaaggaggacatacaattgatg 320
>gb|BU827090.1|BU827090 UK128TD01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 291 ttatcatcgatacaaggaggacatacaattgatg 324
>gb|BU828387.1|BU828387 K022P24P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 553
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 270 ttatcatcgatacaaggaggacatacaattgatg 303
>gb|BU834936.1|BU834936 T067E04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 686
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 288 ttatcatcgatacaaggaggacatacaattgatg 321
>gb|BU862048.1|BU862048 S010F12 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 288 ttatcatcgatacaaggaggacatacaattgatg 321
>gb|BU863137.1|BU863137 S024E03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 292 ttatcatcgatacaaggaggacatacaattgatg 325
>gb|BU866607.1|BU866607 S068G01 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 386
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 288 ttatcatcgatacaaggaggacatacaattgatg 321
>gb|BU867745.1|BU867745 M103G09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 402
Score = 44.1 bits (22), Expect = 0.005
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||||| || || || | || ||||||||||||||||||||
Sbjct: 207 gatggaagcaatggtgatgtagcagtggatcattatcatcgatacaagga 256
>gb|BU888068.1|BU888068 P003C09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 678
Score = 44.1 bits (22), Expect = 0.005
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||||| || || || | || ||||||||||||||||||||
Sbjct: 197 gatggaagcaatggtgatgtagcagtggatcattatcatcgatacaagga 246
>gb|BU889047.1|BU889047 P016A08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 288 ttatcatcgatacaaggaggacatacaattgatg 321
>gb|BU893566.1|BU893566 P079E05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 288 ttatcatcgatacaaggaggacatacaattgatg 321
>gb|CA926637.1|CA926637 MTU6CR.P17.D01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 234 ttatcatcgatacaaggaggacatacaattgatg 267
>gb|CA927328.1|CA927328 MTU6CR.P7.F07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.005
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 42 ttatcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||||| |||||| || |||||
Sbjct: 370 ttatcatcgatacaaggaggacatacaattgatg 337
>gb|AJ777196.1|AJ777196 AJ777196 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400024F06F1, mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.005
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||||| || || || | || ||||||||||||||||||||
Sbjct: 211 gatggaagcaatggtgatgtagcagtggatcattatcatcgatacaagga 260
>gb|AJ777522.1|AJ777522 AJ777522 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400029D12F1, mRNA sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.005
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||||| || || || | || ||||||||||||||||||||
Sbjct: 129 gatggaagcaatggtgatgtagcagtggatcattatcatcgatacaagga 178
>gb|DT475968.1|DT475968 WS0128.BR_M24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M24 5', mRNA sequence
Length = 541
Score = 44.1 bits (22), Expect = 0.005
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||||| || || || | || ||||||||||||||||||||
Sbjct: 219 gatggaagcaatggtgatgtagcagtggatcattatcatcgatacaagga 268
>gb|DT509401.1|DT509401 WS02423.BR_K04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_K04 5', mRNA sequence
Length = 869
Score = 44.1 bits (22), Expect = 0.005
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagga 59
|||||||||||||| || || || | || ||||||||||||||||||||
Sbjct: 187 gatggaagcaatggtgatgtagcagtggatcattatcatcgatacaagga 236
>gb|BI072850.1|BI072850 C089P40U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 256
Score = 42.1 bits (21), Expect = 0.021
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacata 66
|||||||||||||||||| ||||||
Sbjct: 228 ttatcatcgatacaaggaggacata 252
>gb|CK115939.1|CK115939 Y017E03 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y017E03 5', mRNA sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.021
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 ttatcatcgatacaaggacgacata 66
|||||||||||||||||| ||||||
Sbjct: 307 ttatcatcgatacaaggaggacata 331
>gb|BI073084.1|BI073084 C092P56U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 362
Score = 40.1 bits (20), Expect = 0.085
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 44 atcatcgatacaaggacgacatagaaatgatg 75
|||||||||||||||| |||||| || |||||
Sbjct: 269 atcatcgatacaaggaggacatacaattgatg 300
>gb|BU815034.1|BU815034 N036D03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 cattatcatcgatacaagga 59
||||||||||||||||||||
Sbjct: 258 cattatcatcgatacaagga 277
>gb|BU878035.1|BU878035 V042D07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 693
Score = 40.1 bits (20), Expect = 0.085
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 328 ttcaagatntttggtgaccgagtaaagcattgggtcacattcaatga 374
||||||| ||||| |||||||| ||| ||||| | |||||||||||
Sbjct: 607 ttcaagacctttggagaccgagtgaagaattggatgacattcaatga 653
>gb|DT473223.1|DT473223 WS01228.BR_P13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_P13 5', mRNA sequence
Length = 908
Score = 40.1 bits (20), Expect = 0.085
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 328 ttcaagatntttggtgaccgagtaaagcattgggtcacattcaatga 374
||||||| ||||| |||||||| ||| ||||| | |||||||||||
Sbjct: 627 ttcaagacctttggagaccgagtgaagaattggatgacattcaatga 673
>gb|DT476275.1|DT476275 WS01228.B21_P13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_P13 3', mRNA sequence
Length = 936
Score = 40.1 bits (20), Expect = 0.085
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 328 ttcaagatntttggtgaccgagtaaagcattgggtcacattcaatga 374
||||||| ||||| |||||||| ||| ||||| | |||||||||||
Sbjct: 550 ttcaagacctttggagaccgagtgaagaattggatgacattcaatga 504
>gb|BU809047.1|BU809047 UL53A06 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 340
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 249 tgaagaactccaagaaagataca 271
|||| ||||||||||||||||||
Sbjct: 16 tgaacaactccaagaaagataca 38
>gb|BU892507.1|BU892507 P064F12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 674
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 249 tgaagaactccaagaaagataca 271
|||| ||||||||||||||||||
Sbjct: 42 tgaacaactccaagaaagataca 64
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,917
Number of Sequences: 369679
Number of extensions: 45917
Number of successful extensions: 11244
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11203
Number of HSP's gapped (non-prelim): 35
length of query: 541
length of database: 203,408,664
effective HSP length: 19
effective length of query: 522
effective length of database: 196,384,763
effective search space: 102512846286
effective search space used: 102512846286
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)