BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Popul... 168 3e-040
gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Popul... 168 3e-040
gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDN... 157 1e-036
gb|DT506751.1|DT506751 WS02416.BR_G17 PTxD-ICC-N-A-14 Popul... 109 2e-022
gb|DT511420.1|DT511420 WS02416.B21_G17 PTxD-ICC-N-A-14 Popu... 109 2e-022
gb|CV273146.1|CV273146 WS0171.B21_M24 PTxD-NR-A-8 Populus t... 72 4e-011
gb|DN490465.1|DN490465 UL50PC11.3pR Populus cold stressed l... 62 4e-008
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 50 2e-004
gb|DN500440.1|DN500440 UL50PC11.5pR Populus cold stressed l... 50 2e-004
gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus ... 46 0.002
gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA librar... 44 0.010
gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library P... 44 0.010
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 44 0.010
gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDN... 44 0.010
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 44 0.010
gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium ... 44 0.010
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 42 0.039
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.039
gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid lib... 42 0.039
gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus ... 42 0.039
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 42 0.039
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.15
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.15
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 40 0.15
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I14 3', mRNA sequence
Length = 742
Score = 168 bits (85), Expect = 3e-040
Identities = 250/305 (81%)
Strand = Plus / Minus
Query: 241 tttgatctgagggagtggaagaagaaagatattactgggatctaccacaaatggcaaaat 300
|||||||| | || |||||| ||||| |||||||| || || || ||||| ||||||||
Sbjct: 734 tttgatcttaaggtgtggaaaaagaaggatattacaggaatatatcacaagtggcaaaac 675
Query: 301 atgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttc 360
||||||||||||||||| || ||||||||||||||| | || || || || | || ||
Sbjct: 674 atgaatgaagacagggtactgtggaagcttgggacattgcctccagggctgattacattt 615
Query: 361 tataagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaaccca 420
||||| |||| || || || | || ||||||||||| |||||||| || || || |||
Sbjct: 614 tataatctgacacatcctcttcagaaatcatggcatgtgcttggattgggttataatcca 555
Query: 421 agcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaag 480
|||||||| | ||||| || || ||||| ||||| || || || || || |||||||||
Sbjct: 554 agcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatgaag 495
Query: 481 ccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtat 540
|||||||||||| |||||||||| || || |||||||||||||||||||| |||||||||
Sbjct: 494 ccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagtat 435
Query: 541 gatca 545
|||||
Sbjct: 434 gatca 430
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_J03 3', mRNA sequence
Length = 743
Score = 168 bits (85), Expect = 3e-040
Identities = 250/305 (81%)
Strand = Plus / Minus
Query: 241 tttgatctgagggagtggaagaagaaagatattactgggatctaccacaaatggcaaaat 300
|||||||| | || |||||| ||||| |||||||| || || || ||||| ||||||||
Sbjct: 735 tttgatcttaaggtgtggaaaaagaaggatattacaggaatatatcacaagtggcaaaac 676
Query: 301 atgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttc 360
||||||||||||||||| || ||||||||||||||| | || || || || | || ||
Sbjct: 675 atgaatgaagacagggtactgtggaagcttgggacattgcctccagggctgattacattt 616
Query: 361 tataagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaaccca 420
||||| |||| || || || | || ||||||||||| |||||||| || || || |||
Sbjct: 615 tataatctgacacatcctcttcagaaatcatggcatgtgcttggattgggttataatcca 556
Query: 421 agcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaag 480
|||||||| | ||||| || || ||||| ||||| || || || || || |||||||||
Sbjct: 555 agcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatgaag 496
Query: 481 ccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtat 540
|||||||||||| |||||||||| || || |||||||||||||||||||| |||||||||
Sbjct: 495 ccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagtat 436
Query: 541 gatca 545
|||||
Sbjct: 435 gatca 431
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K040P50 3', mRNA sequence
Length = 731
Score = 157 bits (79), Expect = 1e-036
Identities = 265/326 (81%), Gaps = 2/326 (0%)
Strand = Plus / Minus
Query: 220 tgggcttatgggatgaacatctttgatctgagggagtggaagaagaaagatattactggg 279
||||| ||||||||||| || |||||||| | || ||| || |||| |||||||| ||
Sbjct: 728 tgggcatatgggatgaatatttttgatcttaaggtgtgaaa--agaaggatattacagga 671
Query: 280 atctaccacaaatggcaaaatatgaatgaagacagggtcctttggaagcttgggacactt 339
|| || ||||| |||||||| ||||||||||||||||| || ||||||||||||||| |
Sbjct: 670 atatatcacaagtggcaaaacatgaatgaagacagggtactgtggaagcttgggacattg 611
Query: 340 ccgcctggcctcttgaccttctataagttgacgcacccactggacaagtcatggcatgtt 399
|| || || || | || || ||||| |||| || || || | || |||||||||||
Sbjct: 610 cctccagggctgattacattttataatctgacacatcctcttcagaaatcatggcatgtg 551
Query: 400 cttggattaggatacaacccaagcattgaccgttcagagatagacaatgctgctgtggtt 459
|||||||| || || || |||||| |||| | ||||| || || ||||| ||||| ||
Sbjct: 550 cttggattgggttataatccaagcgttgatagatcagaaattgaaaatgcagctgttgtc 491
Query: 460 cattacaatgggaacatgaagccatggctggagctagcaatgaccaagtaccgaccatat 519
|| || || || ||||||||||||||||||||| |||||||||| || || |||||||||
Sbjct: 490 cactataacggtaacatgaagccatggctggagttagcaatgactaaatatcgaccatat 431
Query: 520 tggaccaagtatatcaagtatgatca 545
||||||||||| ||||||||||||||
Sbjct: 430 tggaccaagtacatcaagtatgatca 405
>gb|DT506751.1|DT506751 WS02416.BR_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_G17 5', mRNA sequence
Length = 560
Score = 109 bits (55), Expect = 2e-022
Identities = 109/127 (85%)
Strand = Plus / Plus
Query: 419 caagcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatga 478
|||||||||| | ||||| || || ||||| ||||| || || || || || |||||||
Sbjct: 2 caagcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatga 61
Query: 479 agccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagt 538
|||||||||||||| |||||||||| || || |||||||||||||||||||| |||||||
Sbjct: 62 agccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagt 121
Query: 539 atgatca 545
|||||||
Sbjct: 122 atgatca 128
>gb|DT511420.1|DT511420 WS02416.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_G17 3', mRNA sequence
Length = 560
Score = 109 bits (55), Expect = 2e-022
Identities = 109/127 (85%)
Strand = Plus / Minus
Query: 419 caagcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatga 478
|||||||||| | ||||| || || ||||| ||||| || || || || || |||||||
Sbjct: 559 caagcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatga 500
Query: 479 agccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagt 538
|||||||||||||| |||||||||| || || |||||||||||||||||||| |||||||
Sbjct: 499 agccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagt 440
Query: 539 atgatca 545
|||||||
Sbjct: 439 atgatca 433
>gb|CV273146.1|CV273146 WS0171.B21_M24 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_M24 3', mRNA sequence
Length = 482
Score = 71.9 bits (36), Expect = 4e-011
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 494 tagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatca 545
|||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct: 481 tagcaatgactaaatatcgaccatattggaccaagtacatcaagtatgatca 430
>gb|DN490465.1|DN490465 UL50PC11.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL50PC11 3',
mRNA sequence
Length = 416
Score = 61.9 bits (31), Expect = 4e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 511 cgaccatattggaccaagtatatcaagtatgatca 545
|||||||||||||||||||| ||||||||||||||
Sbjct: 405 cgaccatattggaccaagtacatcaagtatgatca 371
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggct 488
|||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 338 gctgctgtcattcattacaatggaaacatgaaaccatggct 298
>gb|DN500440.1|DN500440 UL50PC11.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL50PC11 5',
mRNA sequence
Length = 479
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 517 tattggaccaagtatatcaagtatgatca 545
|||||||||||||| ||||||||||||||
Sbjct: 27 tattggaccaagtacatcaagtatgatca 55
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_K18 3', mRNA sequence
Length = 740
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 220 tgggcttatgggatgaacatctttgatctgagggagtggaaga 262
||||| ||||| ||||||||||||||| ||| ||| |||||||
Sbjct: 738 tgggcatatggaatgaacatctttgatttgaaggaatggaaga 696
Score = 42.1 bits (21), Expect = 0.039
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 460 cattacaatgggaacatgaagccatggct 488
||||||||||| |||||||| ||||||||
Sbjct: 498 cattacaatggcaacatgaaaccatggct 470
>gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
||||| |||||||||||| |||||||| ||||||
Sbjct: 314 atgtgcctgggcttatggaatgaacatatttgat 347
>gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
||||| |||||||||||| |||||||| ||||||
Sbjct: 430 atgtgcctgggcttatggaatgaacatatttgat 463
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaa 473
|||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 574 gagatagagaatgcagctgtagttcactacaatgggaa 611
>gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G069P39 5', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
||||| |||||||||||| |||||||| ||||||
Sbjct: 314 atgtgcctgggcttatggaatgaacatatttgat 347
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
||||| |||||||||||| |||||||| ||||||
Sbjct: 266 atgtgcctgggcttatggcatgaacatatttgat 299
>gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600005G03F1, mRNA sequence
Length = 435
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
||||| |||||||||||| |||||||| ||||||
Sbjct: 355 atgtgcctgggcttatggcatgaacatatttgat 388
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 42.1 bits (21), Expect = 0.039
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 caatgctgctgtggttcattacaatgggaacatgaagccatggct 488
|||||||||||| ||||||| ||||| |||||||| || |||||
Sbjct: 182 caatgctgctgtcattcattataatggaaacatgaaaccttggct 226
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 657 agtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 3', mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.039
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 caatgctgctgtggttcattacaatgggaacatgaagccatggct 488
|||||||||||| ||||||| ||||| |||||||| || |||||
Sbjct: 390 caatgctgctgtcattcattataatggaaacatgaaaccttggct 346
>gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_B22 3', mRNA sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.039
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggct 488
|||||||| ||||||||||||| |||||||| || |||||
Sbjct: 339 gctgctgtcattcattacaatggaaacatgaaaccttggct 299
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.039
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 382 gacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
||||||||||||||||| || ||| | || || ||||||||||||
Sbjct: 165 gacaagtcatggcatgtcctgggacttgggtataacccaagcatt 209
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgc 498
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 383 acaagtcatggcatgttcttggattaggatacaacccaagcatt 426
|||||||||||||||| || ||| | || || ||||||||||||
Sbjct: 143 acaagtcatggcatgtcctgggacttgggtataacccaagcatt 186
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,146
Number of Sequences: 369679
Number of extensions: 104146
Number of successful extensions: 29076
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29044
Number of HSP's gapped (non-prelim): 31
length of query: 969
length of database: 203,408,664
effective HSP length: 19
effective length of query: 950
effective length of database: 196,384,763
effective search space: 186565524850
effective search space used: 186565524850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)