BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAS4f06.yg.3.1
         (768 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|Y13773.1|PTY13773  Populus trichocarpa mRNA for laccase,...    44   0.008

>emb|Y13773.1|PTY13773 Populus trichocarpa mRNA for laccase, lac110 gene
          Length = 2109

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 121 tgccttcaatggcagctttgcagctc 146
           ||||||||||||||||| ||||||||
Sbjct: 98  tgccttcaatggcagctctgcagctc 123



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,393
Number of Sequences: 369679
Number of extensions: 84393
Number of successful extensions: 21898
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21897
Number of HSP's gapped (non-prelim): 1
length of query: 768
length of database: 203,408,664
effective HSP length: 19
effective length of query: 749
effective length of database: 196,384,763
effective search space: 147092187487
effective search space used: 147092187487
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)