BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN24c09.yg.2.1
(425 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal libr... 111 2e-023
gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus... 111 2e-023
gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Popul... 111 2e-023
gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Librar... 88 3e-016
gb|CF229283.1|CF229283 PtaXM0023E4E0410 Poplar cDNA library... 88 3e-016
gb|CK100621.1|CK100621 C057P32.5pR Populus strain T89 leave... 88 3e-016
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 88 3e-016
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 80 8e-014
gb|AJ777820.1|AJ777820 AJ777820 Populus euphratica root 3-6... 80 8e-014
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 78 3e-013
gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Libra... 72 2e-011
gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Librar... 72 2e-011
gb|CF234212.1|CF234212 PtaJXO3H12H1216 Poplar cDNA library ... 70 7e-011
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 70 7e-011
gb|CB239511.1|CB239511 RSH12F10 two-month-old roots from cl... 64 5e-009
gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium ... 64 5e-009
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 64 5e-009
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 62 2e-008
gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA librar... 60 7e-008
gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA librar... 60 7e-008
gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichoca... 60 7e-008
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 60 7e-008
gb|CA925680.1|CA925680 MTU7TL.P4.E11 Aspen leaf cDNA Librar... 58 3e-007
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 52 2e-005
gb|CN549469.1|CN549469 GQ0241.B3_B20 GQ024 Populus trichoca... 50 7e-005
gb|DV466097.1|DV466097 MTUNUL1.P47.C03 NUL Populus fremonti... 50 7e-005
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 50 7e-005
gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid lib... 48 3e-004
gb|BU866508.1|BU866508 S067E12 Populus imbibed seed cDNA li... 46 0.001
gb|AY162184.1| Populus tremuloides cellulose synthase-like ... 46 0.001
gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus ... 42 0.017
gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus t... 42 0.017
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 42 0.017
gb|CF235953.1|CF235953 PtaJXT0028H7H0715 Poplar cDNA librar... 40 0.066
gb|CK102126.1|CK102126 G065P23.5pR Populus tension wood cDN... 38 0.26
gb|CV274041.1|CV274041 WS0172.B21_A03 PTxD-NR-A-8 Populus t... 38 0.26
>gb|CK320732.1|CK320732 X9SP01b11 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 769
Score = 111 bits (56), Expect = 2e-023
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 247 aatgagatggagtggtgttgggatcgatgaatggtggaggaatgaacagttctgggttat 306
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 307 tggaggtgtgtc 318
>gb|DT476519.1|DT476519 WS01229.B21_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 3', mRNA sequence
Length = 853
Score = 111 bits (56), Expect = 2e-023
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct: 840 aatgagatggagtggtgttgggattgacgaatggtggagaaatgagcagttctgggttat 781
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 780 tggaggtgtgtc 769
>gb|DT509821.1|DT509821 WS02424.BR_N10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_N10 5', mRNA sequence
Length = 723
Score = 111 bits (56), Expect = 2e-023
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 414 aatgagatggagtggtgttgggatcgatgaatggtggaggaatgaacagttctgggttat 473
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 474 tggaggtgtgtc 485
>gb|CA927446.1|CA927446 MTU6CR.P9.B04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 87.7 bits (44), Expect = 3e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 108 atgaggtggagtggtgttgggattgatgagtggtggaggaatgaacagttttgggtcatc 49
Query: 283 ggaggtgt 290
|| |||||
Sbjct: 48 ggtggtgt 41
>gb|CF229283.1|CF229283 PtaXM0023E4E0410 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 642
Score = 87.7 bits (44), Expect = 3e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 308 atgaggtggagtggtgttgggattgatgagtggtggaggaatgaacagttttgggtcatc 367
Query: 283 ggaggtgt 290
|| |||||
Sbjct: 368 ggtggtgt 375
>gb|CK100621.1|CK100621 C057P32.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C057P32 5', mRNA sequence
Length = 468
Score = 87.7 bits (44), Expect = 3e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 367 atgaggtggagtggtgttgggattgatgagtggtggaggaatgaacagttttgggtcatc 426
Query: 283 ggaggtgt 290
|| |||||
Sbjct: 427 ggtggtgt 434
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 87.7 bits (44), Expect = 3e-016
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 2957 atgaggtggagtggtgttgggattgatgagtggtggaggaatgaacagttttgggtcatc 3016
Query: 283 ggaggtgt 290
|| |||||
Sbjct: 3017 ggtggtgt 3024
>gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 79.8 bits (40), Expect = 8e-014
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcatt 282
||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||| |||
Sbjct: 80 atgaggtggagtggtgttgggattgatgaatggtggaggaacgaacagttttgggttatt 139
Query: 283 ggaggtgt 290
|| |||||
Sbjct: 140 ggtggtgt 147
>gb|AJ777820.1|AJ777820 AJ777820 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035F01F1, mRNA sequence
Length = 658
Score = 79.8 bits (40), Expect = 8e-014
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 299 atgaggtggagtggtgttgggattgatgagtggtggaggaatgaacagttttgggt 354
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 77.8 bits (39), Expect = 3e-013
Identities = 193/247 (78%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||| ||||||||||||||| |||| ||||| || || ||||| || ||||| || ||
Sbjct: 2749 caatgctgccagcctgtggtttttgtctcttttcatttgtattttcgcaacaagtatact 2808
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
||||||||||||||| ||||| ||||| || |||||||| || || || ||||||||
Sbjct: 2809 ggaaatgagatggagtggggttggtattgacgagtggtggagaaacgaacaattctgggt 2868
Query: 279 cattggaggtgtgtcctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagc 338
|| ||||| || || | || || || || ||||| ||||| ||| | ||| ||||
Sbjct: 2869 gatcggaggggtatcagcacatctatttgcagtgttccaggggcttttaaaggttctagc 2928
Query: 339 tggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctcaga 398
|||||||||||| | || |||| || || || || ||||| || ||||| ||||||||
Sbjct: 2929 tggtgttgatacgaacttcactgttacgtctaaaggaggagacgacgacgagttctcaga 2988
Query: 399 gctgtac 405
|||||||
Sbjct: 2989 gctgtac 2995
>gb|CA926496.1|CA926496 MTU6CR.P15.F11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 294
Score = 71.9 bits (36), Expect = 2e-011
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||| ||||||||||||||| |||| ||||| || || ||||| || ||||| || ||
Sbjct: 52 caatgctgccagcctgtggtttttgtctcttttcatttgtattttcgcaacaagtatact 111
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
||||||||||||||| ||||| ||||| || |||||||| || ||||| || |||||
Sbjct: 112 ggaaatgagatggagtggggttggtattgacgagtggtggagaaacgagcaattttgggt 171
Query: 279 cattggagg 287
|| |||||
Sbjct: 172 gatcggagg 180
>gb|CA926817.1|CA926817 MTU6CR.P1.E04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 294
Score = 71.9 bits (36), Expect = 2e-011
Identities = 105/129 (81%)
Strand = Plus / Minus
Query: 159 caatgttgccagcctgtggttcatgtcactttttatctgcatttttgctacaagcatcct 218
||||| ||||||||||||||| |||| ||||| || || ||||| || ||||| || ||
Sbjct: 243 caatgctgccagcctgtggtttttgtctcttttcatttgtattttcgcaacaagtatact 184
Query: 219 nnnaatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
||||||||||||||| ||||| ||||| || |||||||| || ||||| || |||||
Sbjct: 183 ggaaatgagatggagtggggttggtattgacgagtggtggagaaacgagcaattttgggt 124
Query: 279 cattggagg 287
|| |||||
Sbjct: 123 gatcggagg 115
>gb|CF234212.1|CF234212 PtaJXO3H12H1216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 462
Score = 69.9 bits (35), Expect = 7e-011
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 223 atgagatggagtggtgttgggattgatga-ttggtggaggaatgagcagttctgggtcat 281
||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct: 296 atgaggtggagtggtgttgggattgatgagctggtggaggaatgaacagtnntgggtcat 355
Query: 282 tggaggtgt 290
|| |||||
Sbjct: 356 cggtggtgt 364
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 69.9 bits (35), Expect = 7e-011
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgg 284
||||||||||| ||||| ||||| || |||||||||||||| || ||||||||||||||
Sbjct: 2770 agatggagtggagttggtattgaagactggtggaggaatgaacaattctgggtcattgg 2828
>gb|CB239511.1|CB239511 RSH12F10 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 606
Score = 63.9 bits (32), Expect = 5e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||
Sbjct: 396 agatggagtggagttggtattgaagactggtggaggaatgaacaattctgggtcat 451
>gb|AJ778476.1|AJ778476 AJ778476 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600001D07F1, mRNA sequence
Length = 677
Score = 63.9 bits (32), Expect = 5e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||
Sbjct: 504 agatggagtggagttggtattgaagactggtggaggaatgaacaattctgggtcat 559
>gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_I21
5', mRNA sequence
Length = 687
Score = 63.9 bits (32), Expect = 5e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||
Sbjct: 14 agatggagtggagttggtattgaagactggtggaggaatgaacaattctgggtcat 69
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 61.9 bits (31), Expect = 2e-008
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 235 ggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtg 289
|||||||| || |||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 3239 ggtgttggcatccatgactggtggagaaatgagcagttctgggtcattggtggtg 3293
>gb|BI127743.1|BI127743 G065P23Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 502
Score = 60.0 bits (30), Expect = 7e-008
Identities = 133/169 (78%)
Strand = Plus / Plus
Query: 233 gtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgtgt 292
||||||| ||||| ||||| |||||||| ||||| || || ||||| ||||||||||| |
Sbjct: 16 gtggtgtcgggatagatgactggtggagaaatgaacaattttgggtgattggaggtgttt 75
Query: 293 cctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgttgatacaa 352
| || ||||| || ||| | || ||||| | ||| ||| | ||||||||| |||||
Sbjct: 76 catcacacctgtttgctctcttccagggtttgctcaaggttttggctggtgttagtacaa 135
Query: 353 gctncactnngacatcaaagggtggagatgatgacgaattctcagagct 401
|| |||| |||||||| || | |||||||| ||||||||||||||
Sbjct: 136 acttcactgttacatcaaaaggagcagatgatggagaattctcagagct 184
>gb|BI128874.1|BI128874 G082P82Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 450
Score = 60.0 bits (30), Expect = 7e-008
Identities = 133/169 (78%)
Strand = Plus / Plus
Query: 233 gtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgtgt 292
||||||| ||||| ||||| |||||||| ||||| || || ||||| ||||||||||| |
Sbjct: 16 gtggtgtcgggatagatgactggtggagaaatgaacaattttgggtgattggaggtgttt 75
Query: 293 cctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgttgatacaa 352
| || ||||| || ||| | || ||||| | ||| ||| | ||||||||| |||||
Sbjct: 76 catcacacctgtttgctctcttccagggtttgctcaaggttttggctggtgttagtacaa 135
Query: 353 gctncactnngacatcaaagggtggagatgatgacgaattctcagagct 401
|| |||| |||||||| || | |||||||| ||||||||||||||
Sbjct: 136 acttcactgttacatcaaaaggagcagatgatggagaattctcagagct 184
>gb|CN520055.1|CN520055 GQ0105.B3_H23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_H23 5', mRNA sequence
Length = 833
Score = 60.0 bits (30), Expect = 7e-008
Identities = 133/169 (78%)
Strand = Plus / Plus
Query: 233 gtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgtgt 292
||||||| ||||| ||||| |||||||| ||||| || || ||||| ||||||||||| |
Sbjct: 36 gtggtgtcgggatagatgactggtggagaaatgaacaattttgggtgattggaggtgttt 95
Query: 293 cctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgttgatacaa 352
| || ||||| |||||| | || ||||| | ||| ||| | ||||||||| |||||
Sbjct: 96 catcacacctgttcgctctcttccagggtttgctcaaggttttggctggtgttagtacaa 155
Query: 353 gctncactnngacatcaaagggtggagatgatgacgaattctcagagct 401
|| |||| |||||||| || | ||||||| ||||||||||||||
Sbjct: 156 acttcactgttacatcaaaaggagcggatgatggagaattctcagagct 204
>gb|AY573575.1| Populus tremula x Populus tremuloides cellulose synthase (CesA4)
mRNA, complete cds
Length = 3778
Score = 60.0 bits (30), Expect = 7e-008
Identities = 133/169 (78%)
Strand = Plus / Plus
Query: 233 gtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgtgt 292
||||||| ||||| ||||| |||||||| ||||| || || ||||| ||||||||||| |
Sbjct: 2987 gtggtgtcgggatagatgactggtggagaaatgaacaattttgggtgattggaggtgttt 3046
Query: 293 cctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgttgatacaa 352
| || ||||| || ||| | || ||||| | ||| ||| | ||||||||| |||||
Sbjct: 3047 catcacacctgtttgctctcttccagggtttgctcaaggttttggctggtgttagtacaa 3106
Query: 353 gctncactnngacatcaaagggtggagatgatgacgaattctcagagct 401
|| |||| |||||||| || | |||||||| ||||||||||||||
Sbjct: 3107 acttcactgttacatcaaaaggagcagatgatggagaattctcagagct 3155
>gb|CA925680.1|CA925680 MTU7TL.P4.E11 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 708
Score = 58.0 bits (29), Expect = 3e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggt 278
||||||||||| ||||| ||||| || |||||||||||||| || ||||||||
Sbjct: 280 agatggagtggagttggtattgaagactggtggaggaatgaacaattctgggt 228
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 52.0 bits (26), Expect = 2e-005
Identities = 132/169 (78%)
Strand = Plus / Plus
Query: 233 gtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgtgt 292
||||||| || || ||||| |||||||| ||||| || || ||||| ||||||||||| |
Sbjct: 2953 gtggtgtcggaatagatgactggtggagaaatgaacaattttgggtgattggaggtgttt 3012
Query: 293 cctcgcacctcttcgctgtgtttcagggacttctcnnggtcatagctggtgttgatacaa 352
| || ||||| || ||| | || ||||| | ||| ||| | ||||||||| |||||
Sbjct: 3013 catcacacctgtttgctctcttccagggtttgctcaaggttttggctggtgttagtacaa 3072
Query: 353 gctncactnngacatcaaagggtggagatgatgacgaattctcagagct 401
|| |||| |||||||| || | |||||||| ||||||||||||||
Sbjct: 3073 acttcactgttacatcaaaaggagcagatgatggagaattctcagagct 3121
>gb|CN549469.1|CN549469 GQ0241.B3_B20 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_B20 5', mRNA sequence
Length = 839
Score = 50.1 bits (25), Expect = 7e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| | ||||| |||| |||| | ||||| ||||||||||| || |||
Sbjct: 40 agatggagtggtgtcagcattgaagatttgtggcgtaatgaacagttctgggtgatcgga 99
Query: 286 ggtgt 290
|||||
Sbjct: 100 ggtgt 104
>gb|DV466097.1|DV466097 MTUNUL1.P47.C03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 857
Score = 50.1 bits (25), Expect = 7e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatga 266
||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 146 agatggagtggagttggtattgaagactggtggaggaatga 186
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 50.1 bits (25), Expect = 7e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 226 agatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattgga 285
|||||||||||||| | ||||| |||| |||| | ||||| ||||||||||| || |||
Sbjct: 2468 agatggagtggtgtcagcattgaagatttgtggcgtaatgaacagttctgggtgatcgga 2527
Query: 286 ggtgt 290
|||||
Sbjct: 2528 ggtgt 2532
>gb|CK087778.1|CK087778 A020P56.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A020P56 3', mRNA sequence
Length = 826
Score = 48.1 bits (24), Expect = 3e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 262 aatgagcagttctgggtcattggaggtg 289
||||||||||||||||||||||| ||||
Sbjct: 741 aatgagcagttctgggtcattggtggtg 714
>gb|BU866508.1|BU866508 S067E12 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 733
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 253 tggtggaggaatgagcagttctgggtcattggagg 287
|||||||||||||||||||| ||| | ||||||||
Sbjct: 139 tggtggaggaatgagcagttttggttgattggagg 173
>gb|AY162184.1| Populus tremuloides cellulose synthase-like protein D4 (CSLD4) mRNA,
partial cds
Length = 3570
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 253 tggtggaggaatgagcagttctgggtcattggagg 287
|||||||||||||||||||| ||| | ||||||||
Sbjct: 2835 tggtggaggaatgagcagttttggttgattggagg 2869
>gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01710_E12 3', mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.017
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 335 tagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattct 394
|||||||||||||||| | || |||| ||||| || || ||||| || || || ||||
Sbjct: 578 tagctggtgttgatacgaacttcactgttacatctaaaggaggagacgacgatgagttct 519
Query: 395 cagagctgta 404
||||||||||
Sbjct: 518 cagagctgta 509
>gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_N18 3', mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.017
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 335 tagctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattct 394
|||||||||||||||| | || |||| ||||| || || ||||| || || || ||||
Sbjct: 578 tagctggtgttgatacgaacttcactgttacatctaaaggaggagacgacgatgagttct 519
Query: 395 cagagctgta 404
||||||||||
Sbjct: 518 cagagctgta 509
>gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E11 3', mRNA sequence
Length = 774
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 253 tggtggaggaatgagcagttctgggtcat 281
|||||||||||||| || |||||||||||
Sbjct: 755 tggtggaggaatgaacaattctgggtcat 727
>gb|CF235953.1|CF235953 PtaJXT0028H7H0715 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.066
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 337 gctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctca 396
||||||||| ||||| || |||| |||||||| || | |||||||| |||||||||
Sbjct: 18 gctggtgttagtacaaacttcactgttacatcaaaaggagcagatgatggagaattctca 77
Query: 397 gagct 401
|||||
Sbjct: 78 gagct 82
>gb|CK102126.1|CK102126 G065P23.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G065P23 5', mRNA sequence
Length = 313
Score = 38.2 bits (19), Expect = 0.26
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 248 atgattggtggaggaatgagcagttctgggtcattggaggtgt 290
|||| |||||||| ||||| || || ||||| |||||||||||
Sbjct: 35 atgactggtggagaaatgaacaattttgggtgattggaggtgt 77
>gb|CV274041.1|CV274041 WS0172.B21_A03 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0172_A03 3', mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.26
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 71 tttgttgtttgagaaaaacaaaa 93
||||||| |||||||||||||||
Sbjct: 37 tttgttggttgagaaaaacaaaa 15
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,150
Number of Sequences: 369679
Number of extensions: 65150
Number of successful extensions: 18590
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18534
Number of HSP's gapped (non-prelim): 53
length of query: 425
length of database: 203,408,664
effective HSP length: 18
effective length of query: 407
effective length of database: 196,754,442
effective search space: 80079057894
effective search space used: 80079057894
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)