BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN520527.1|CN520527 GQ0107.B3_G02 GQ010 Populus trichoca... 137 2e-030
gb|BI128486.1|BI128486 G076P74Y Populus cambium cDNA librar... 135 8e-030
gb|BU895153.1|BU895153 X020A05 Populus wood cDNA library Po... 127 2e-027
gb|CK102412.1|CK102412 G076P74.5pR Populus tension wood cDN... 125 8e-027
gb|CA923582.1|CA923582 MTU7CL.P12.C04 Aspen leaf cDNA Libra... 123 3e-026
gb|DT488848.1|DT488848 WS02537.B21_J17 PT-MB-N-A-15 Populus... 103 3e-020
gb|DT490994.1|DT490994 WS02546.C21.1_I09 PT-MB-N-A-15 Popul... 103 3e-020
gb|CA923576.1|CA923576 MTU7CL.P12.B08 Aspen leaf cDNA Libra... 100 5e-019
gb|CK092552.1|CK092552 G087P30.3pR Populus tension wood cDN... 100 5e-019
gb|CV254014.1|CV254014 WS0223.B21_L20 PTxD-ICC-A-12 Populus... 94 3e-017
gb|CA923612.1|CA923612 MTU7CL.P12.F09 Aspen leaf cDNA Libra... 92 1e-016
gb|CA923569.1|CA923569 MTU7CL.P12.A11 Aspen leaf cDNA Libra... 86 7e-015
gb|CA923949.1|CA923949 MTU7CL.P16.H12 Aspen leaf cDNA Libra... 86 7e-015
gb|CA926534.1|CA926534 MTU6CR.P16.B08 Aspen root cDNA Libra... 86 7e-015
gb|BU882270.1|BU882270 UM74TG12 Populus flower cDNA library... 78 2e-012
gb|CA924119.1|CA924119 MTU7CL.P1.H09 Aspen leaf cDNA Librar... 76 7e-012
gb|BI130093.1|BI130093 G100P01Y Populus cambium cDNA librar... 74 3e-011
gb|CK318025.1|CK318025 B9P04f02 Populus stem seasonal libra... 40 0.36
>gb|CN520527.1|CN520527 GQ0107.B3_G02 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_G02 5', mRNA sequence
Length = 782
Score = 137 bits (69), Expect = 2e-030
Identities = 281/352 (79%)
Strand = Plus / Plus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | ||||||||| ||||||||||||||| | || ||||||||||
Sbjct: 366 tttgtgagaagaatggagactcgttgtcagacaagatggatgaattagcatgctttgctc 425
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
| || |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 426 caggaatgctggctttaggatcatctggttatgggcctgatgactctcagaaaatcttca 485
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 486 cgcttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 545
Query: 1405 tggctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtgga 1464
||||||| || ||||||||||| | | |||| |||||||| |||| || || || ||||
Sbjct: 546 tggctggggagaattatttttttcgtcctggggaggacatgagtgttggtacatcttgga 605
Query: 1465 acatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaata 1524
|||| |||||||| || |||||||||||||| | ||||||||||| |||||||| || |
Sbjct: 606 acatattgagaccagaaactgttgaatcactcttttacctgtggcgtttgacgggcaaca 665
Query: 1525 aaacataccaagattgggggtgggacatattccaggcatttgagaagaactc 1576
|| || | ||| ||||| ||| | |||||| | |||||||| ||||||||
Sbjct: 666 ggacttatcgagagtggggttggaatatattcnaagcatttgaaaagaactc 717
Score = 75.8 bits (38), Expect = 7e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 870 ggtgatagtatccttgcagattctggtacggagcaacttgaattcatagctctttcacag 929
||||| ||||| ||||| |||||||| || ||||| ||||||||||| |||||||| ||
Sbjct: 11 ggtgacagtattcttgccgattctggcacagagcagcttgaattcattgctctttctcat 70
Query: 930 aggactggagatcccaaataccagcagaaggcggagaa 967
||||| ||||| || || || ||||||||||| |||||
Sbjct: 71 aggacaggagacccaaagtatcagcagaaggcagagaa 108
Score = 60.0 bits (30), Expect = 4e-007
Identities = 116/142 (81%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 1046 atcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||| || || || ||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 187 atcatactcgaccataacttttggggcaatgggtgacagcttttatgaatatttgctcaa 246
Query: 1106 ggtctggatccaggggaataaaac-tgagcatgtaaaacactacagacaaatgtgggaga 1164
|| ||||| || ||||| ||||| | ||| ||| | | | || ||| ||||||||||||
Sbjct: 247 agtttggattcaagggaacaaaacttcagc-tgtgagaaattatagagaaatgtgggaga 305
Query: 1165 catcaatggaaggtctattaag 1186
||||||| ||||||| |||||
Sbjct: 306 aatcaatgaaaggtctcttaag 327
>gb|BI128486.1|BI128486 G076P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 528
Score = 135 bits (68), Expect = 8e-030
Identities = 281/352 (79%)
Strand = Plus / Plus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 173 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 232
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
|||| |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 233 ctggaatgctggctttaggatcatctggttatgggcctgatgagtctcagaaaatcttca 292
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 293 cacttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 352
Query: 1405 tggctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtgga 1464
||||||| || ||||||||||| | | |||| |||||||| |||| || || || ||||
Sbjct: 353 tggctggggagaattatttttttcgtcctggggaggacatgagtgttggtacatcttgga 412
Query: 1465 acatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaata 1524
|||| |||||||| || ||||||||||| || | ||||||||||| |||||||| || |
Sbjct: 413 acatattgagaccagaaactgttgaatccctcttttacctgtggcgtttgacgggcaaca 472
Query: 1525 aaacataccaagattgggggtgggacatattccaggcatttgagaagaactc 1576
|| || | ||| ||||| ||| | |||||||| |||||||| ||||||||
Sbjct: 473 ggacttatcgagagtggggttggaatatattccaagcatttgaaaagaactc 524
Score = 54.0 bits (27), Expect = 2e-005
Identities = 101/123 (82%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 1065 tttggtgctatgggagacagcttctacgaatatttgctcaaggtctggatccaggggaat 1124
||||| || ||||| |||||||| || |||||||||||||| || ||||| || |||||
Sbjct: 13 tttggggcaatgggtgacagcttttatgaatatttgctcaaagtttggattcaagggaac 72
Query: 1125 aaaac-tgagcatgtaaaacactacagacaaatgtgggagacatcaatggaaggtctatt 1183
||||| | ||| ||| | | | || ||| |||||||||||| ||||||| ||||||| ||
Sbjct: 73 aaaacttcagc-tgtcagaaattatagagaaatgtgggagaaatcaatgaaaggtctctt 131
Query: 1184 aag 1186
|||
Sbjct: 132 aag 134
>gb|BU895153.1|BU895153 X020A05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 452
Score = 127 bits (64), Expect = 2e-027
Identities = 280/352 (79%)
Strand = Plus / Plus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 83 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 142
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
|||| |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 143 ctggaatgctggctttaggatcatctggttatgggcctgatgagtctcagaaaatcttca 202
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||| ||||| | || || || || |
Sbjct: 203 cacttgctgaagagcttgcttggacttgctacaacttccaccaatcaacacctacaaaat 262
Query: 1405 tggctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtgga 1464
||||||| || ||||||||||| | | |||| |||||||| |||| || || || ||||
Sbjct: 263 tggctggggagaattatttttttcgtcctggggaggacatgagtgttggtacatcttgga 322
Query: 1465 acatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaata 1524
|||| |||||||| || ||||||||||| || | ||||||||||| |||||||| || |
Sbjct: 323 acatattgagaccagaaactgttgaatccctcttttacctgtggcgtttgacgggcaaca 382
Query: 1525 aaacataccaagattgggggtgggacatattccaggcatttgagaagaactc 1576
|| || | ||| ||||| ||| | |||||||| |||||||| ||||||||
Sbjct: 383 ggacttatcgagagtggggttggaatatattccaagcatttgaaaagaactc 434
>gb|CK102412.1|CK102412 G076P74.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G076P74 5', mRNA sequence
Length = 555
Score = 125 bits (63), Expect = 8e-027
Identities = 237/295 (80%)
Strand = Plus / Plus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 173 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 232
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
|||| |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 233 ctggaatgctggctttaggatcatctggttatgggcctgatgagtctcagaaaatcttca 292
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 293 cacttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 352
Query: 1405 tggctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtgga 1464
||||||| || ||||||||||| | | |||| |||||||| |||| || || || ||||
Sbjct: 353 tggctggggagaattatttttttcgtcctggggaggacatgagtgttggtacatcttgga 412
Query: 1465 acatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggg 1519
|||| |||||||| || ||||||||||| || | ||||||||||| ||||||||
Sbjct: 413 acatattgagaccagaaactgttgaatccctcttttacctgtggcgtttgacggg 467
Score = 54.0 bits (27), Expect = 2e-005
Identities = 101/123 (82%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 1065 tttggtgctatgggagacagcttctacgaatatttgctcaaggtctggatccaggggaat 1124
||||| || ||||| |||||||| || |||||||||||||| || ||||| || |||||
Sbjct: 13 tttggggcaatgggtgacagcttttatgaatatttgctcaaagtttggattcaagggaac 72
Query: 1125 aaaac-tgagcatgtaaaacactacagacaaatgtgggagacatcaatggaaggtctatt 1183
||||| | ||| ||| | | | || ||| |||||||||||| ||||||| ||||||| ||
Sbjct: 73 aaaacttcagc-tgtcagaaattatagagaaatgtgggagaaatcaatgaaaggtctctt 131
Query: 1184 aag 1186
|||
Sbjct: 132 aag 134
>gb|CA923582.1|CA923582 MTU7CL.P12.C04 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 671
Score = 123 bits (62), Expect = 3e-026
Identities = 263/330 (79%)
Strand = Plus / Plus
Query: 447 aaagttaaagaggcaatgctccatgcttggaattcttatgttaagtatgcctggggaatg 506
||||||||||| || ||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 175 aaagttaaagaagctatgcttcatgcttggacttcttatgagaagtatgcttggggccat 234
Query: 507 gacgagcttcagccacaatcgaagaatggtatcaacagctttggtggtcttggagcaacc 566
|| || |||||||||||| | | |||||| | | |||||||||||||||||||||||
Sbjct: 235 gatgaacttcagccacaaacaaggaatggagttgatagctttggtggtcttggagcaact 294
Query: 567 cttgttgactcacttgataccctatacataatgggcctgaaagatgaatttcagaaagct 626
|| || || || |||||||| ||| |||||||| || | || | ||||| | |||
Sbjct: 295 ctagtcgattctcttgatacattatttataatgggtcttcatgagcagtttcaaagagcc 354
Query: 627 agagactgggtggcggagtcattagactttgacaaggattatgatgcgagtgtttttgaa 686
| ||| ||||| ||| | ||||| || || ||||||||||||| || ||||| |||||
Sbjct: 355 aaagagtgggttgcgaactcattggatttcaacaaggattatgaggctagtgtctttgag 414
Query: 687 acgaccataagggttgttggaggtctgcttagttcatacgatctatctggtgataaagta 746
|| |||||||||||||||||||| || || ||| | || ||||| ||||| || ||| |
Sbjct: 415 acaaccataagggttgttggagggcttctcagtgcttatgatctttctggcgacaaaatt 474
Query: 747 tttcttgataaggctaaagatattacagat 776
|||||||| ||||||||||||||| |||||
Sbjct: 475 tttcttgaaaaggctaaagatattgcagat 504
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 876 agtatccttgcagattctggtacggagcaacttgaattcat 916
|||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 604 agtatcctggcagattctggaacagagcagcttgaattcat 644
>gb|DT488848.1|DT488848 WS02537.B21_J17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_J17 3', mRNA sequence
Length = 763
Score = 103 bits (52), Expect = 3e-020
Identities = 244/308 (79%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| || || || |||||||| |||||||| || ||||||||||| ||
Sbjct: 718 caggacatgagtgttggtacatcttggaacatattgagaccagaaactgttgaatcgctc 659
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||||||||| || ||||| || | || || | ||| ||||| ||| | ||||||
Sbjct: 658 ttttacctgtggcgttttacgggcaacaggacttatcgagagtggggttggaatatattc 599
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| |||||||| |||||||| || || ||| | || ||||| ||||| | ||||| ||
Sbjct: 598 caagcatttgaaaagaactcacgtattgaaacaggctatgttggactaaaggatgttaat 539
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
||||| | |||||||| |||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 538 actggagtcaaagacaatatgatgcaaagtttctttctggccgagactctgaagtatctt 479
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || |||||||| || | |||||||| || | || || ||||||||||| || |||
Sbjct: 478 tatcttcttttctctccatcttcagtcatctcactagatgaatgggttttcaacacagaa 419
Query: 1737 gctcaccc 1744
|| |||||
Sbjct: 418 gcccaccc 411
>gb|DT490994.1|DT490994 WS02546.C21.1_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_I09 3', mRNA sequence
Length = 946
Score = 103 bits (52), Expect = 3e-020
Identities = 244/308 (79%)
Strand = Plus / Minus
Query: 1437 caggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactg 1496
||||||||| |||| || || || |||||||| |||||||| || ||||||||||| ||
Sbjct: 714 caggacatgagtgttggtacatcttggaacatattgagaccagaaactgttgaatcgctc 655
Query: 1497 atgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattc 1556
| ||||||||||| || ||||| || | || || | ||| ||||| ||| | ||||||
Sbjct: 654 ttttacctgtggcgttttacgggcaacaggacttatcgagagtggggttggaatatattc 595
Query: 1557 caggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaac 1616
|| |||||||| |||||||| || || ||| | || ||||| ||||| | ||||| ||
Sbjct: 594 caagcatttgaaaagaactcacgtattgaaacaggctatgttggactaaaggatgttaat 535
Query: 1617 actggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctg 1676
||||| | |||||||| |||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 534 actggagtcaaagacaatatgatgcaaagtttctttctggccgagactctgaagtatctt 475
Query: 1677 tacctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaa 1736
|| || |||||||| || | |||||||| || | || || ||||||||||| || |||
Sbjct: 474 tatcttcttttctctccatcttcagtcatctcactagatgaatgggttttcaacacagaa 415
Query: 1737 gctcaccc 1744
|| |||||
Sbjct: 414 gcccaccc 407
Score = 50.1 bits (25), Expect = 4e-004
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 1354 aagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttggctggag 1413
||||||||||| |||| ||||| || ||||||||| | || || || || |||||||| |
Sbjct: 875 aagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaattggctgggg 816
Query: 1414 aaaattatttttt 1426
| |||||||||||
Sbjct: 815 agaattatttttt 803
>gb|CA923576.1|CA923576 MTU7CL.P12.B08 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 465
Score = 99.6 bits (50), Expect = 5e-019
Identities = 257/326 (78%)
Strand = Plus / Minus
Query: 1347 cttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttg 1406
|||||| |||||||||| |||| || |||||||||||||| || || || || ||
Sbjct: 329 cttgcagaagagcttgcatggacttgttataatttctaccagttgacacctacaaaactg 270
Query: 1407 gctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaac 1466
|||||||| || |||| || || |||||||||||||| ||| ||||| || ||||||
Sbjct: 269 gctggagagaactattactttcaccctggacaggacatgaatgttggcacttcatggaac 210
Query: 1467 atcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaataaa 1526
|| ||||| || ||||| ||||| | ||| | ||||||||||| | || || || ||
Sbjct: 209 attttgaggcctgagacagttgagacgctgttttacctgtggcgtatcactggaaacaag 150
Query: 1527 acataccaagattgggggtgggacatattccaggcatttgagaagaactcccgcatagaa 1586
||||||||||| ||||| ||| | || || || ||||| || |||||||||||| ||||
Sbjct: 149 acataccaagaatggggttggaatatttttcaagcattcgaaaagaactcccgcttagag 90
Query: 1587 tctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagagt 1646
|||||||||| || || | ||||||||| | ||| |||||||||| ||||||||||
Sbjct: 89 actggatatgttggtcttaaggatgtgaactcaggtatcaaagacaacaagatgcagagt 30
Query: 1647 ttcttcctggcagagacgctgaagta 1672
|||||||| || ||||| || |||||
Sbjct: 29 ttcttccttgccgagacacttaagta 4
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1251 tctgacaagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||||||||| | || |||||||||||||| ||| |||| |||||
Sbjct: 425 tctgacaagatggatgaattggcatgctttgctcctggcatgttggctttagg 373
>gb|CK092552.1|CK092552 G087P30.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P30 3', mRNA sequence
Length = 754
Score = 99.6 bits (50), Expect = 5e-019
Identities = 216/270 (80%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 1461 tggaacatcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacgggg 1520
|||||||| |||||||| || ||||||||||| || | ||||||||||| ||||||||
Sbjct: 697 tggaacatattgagaccagaaactgttgaatccctcttttacctgtggcgtttgacgggc 638
Query: 1521 aataaaacataccaagattgggggtgggacatattccaggcatttgagaagaactcccgc 1580
|| | || || | ||| ||||| ||| | |||||||| |||||||| |||||||| ||
Sbjct: 637 aacaggacttatcgagagtggggttggaatatattccaagcatttgaaaagaactcacgt 578
Query: 1581 atagaatctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatg 1640
|| ||| | || ||||| ||||| | ||||| || ||||| | |||||||| ||||||
Sbjct: 577 attgaaacaggctatgttggactaaaggatgttaatactggagtcaaagacaatatgatg 518
Query: 1641 cagagtttcttcctggcagagacgctg-aagtacctgtacctacttttctcccctccatc 1699
|| |||||||| ||||| ||||| ||| ||||| || || || |||||||| || | ||
Sbjct: 517 caaagtttctttctggccgagactctgaaagtatctttatcttcttttctctccatcttc 458
Query: 1700 agtcatatccttcgacgagtgggttttcaa 1729
|||||| || | |||||||||||||||||
Sbjct: 457 agtcatctcactagacgagtgggttttcaa 428
>gb|CV254014.1|CV254014 WS0223.B21_L20 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides
cDNA clone WS0223_L20 3', mRNA sequence
Length = 717
Score = 93.7 bits (47), Expect = 3e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 1438 aggacatgggtgtgggcacgtcgtggaacatcttgagaccggagactgttgaatcactga 1497
|||||||| |||| || || || |||||||| |||||||| || ||||||||||| ||
Sbjct: 712 aggacatgagtgttggtacatcttggaacatattgagaccagaaactgttgaatcgctct 653
Query: 1498 tgtacctgtggcgcttgacggggaataaaacataccaagattgggggtgggacatattcc 1557
| ||||| ||||| || ||||| || | || || | ||| ||||| ||| | |||||||
Sbjct: 652 tttacctatggcgttttacgggcaacaggacttatcgagagtggggttggaatatattcc 593
Query: 1558 aggcatttgagaagaactcccgcatagaatctggatatgtgggactgagagatgtgaaca 1617
| |||||||| |||||||| || || ||| | || ||||| ||||| | ||||| || |
Sbjct: 592 aagcatttgaaaagaactcacgtattgaaacaggctatgttggactaaaggatgttaata 533
Query: 1618 ctggtgaaaaagacaacatgatgcagagtttcttcctggcagagacgctgaagtacctgt 1677
|||| | |||||||| |||||||| |||||||| ||||| ||||| |||||||| || |
Sbjct: 532 ctggagtcaaagacaatatgatgcaaagtttctttctggccgagactctgaagtatcttt 473
Query: 1678 acctacttttctcccctccatcagtcatatccttcgacgagtgggttttcaatactgaag 1737
| || |||||||| || | |||||||| || | || || ||||||||||| || ||||
Sbjct: 472 atcttcttttctctccatcttcagtcatctcactagatgaatgggttttcaacacagaag 413
Query: 1738 ctcaccc 1744
| |||||
Sbjct: 412 cccaccc 406
>gb|CA923612.1|CA923612 MTU7CL.P12.F09 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 497
Score = 91.7 bits (46), Expect = 1e-016
Identities = 256/326 (78%)
Strand = Plus / Minus
Query: 1347 cttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagttg 1406
|||||| |||||||||| |||| || |||||||||||||| || || || || ||
Sbjct: 329 cttgcagaagagcttgcatggacttgttataatttctaccagttgacacctacaaaactg 270
Query: 1407 gctggagaaaattattttttccatactggacaggacatgggtgtgggcacgtcgtggaac 1466
|||||||| || |||| || || |||||||||||||| ||| ||||| || ||||||
Sbjct: 269 gctggagagaactattactttcaccctggacaggacatgaatgttggcacttcatggaac 210
Query: 1467 atcttgagaccggagactgttgaatcactgatgtacctgtggcgcttgacggggaataaa 1526
|| ||||| || ||||| | ||| | ||| | ||||||||||| | || || || ||
Sbjct: 209 attttgaggcctgagacagatgagacgctgttttacctgtggcgtatcactggaaacaag 150
Query: 1527 acataccaagattgggggtgggacatattccaggcatttgagaagaactcccgcatagaa 1586
||||||||||| ||||| ||| | || || || ||||| || |||||||||||| ||||
Sbjct: 149 acataccaagaatggggttggaatatttttcaagcattcgaaaagaactcccgcttagag 90
Query: 1587 tctggatatgtgggactgagagatgtgaacactggtgaaaaagacaacatgatgcagagt 1646
|||||||||| || || | ||||||||| | ||| |||||||||| ||||||||||
Sbjct: 89 actggatatgttggtcttaaggatgtgaactcaggtatcaaagacaacaagatgcagagt 30
Query: 1647 ttcttcctggcagagacgctgaagta 1672
|||||||| || ||||| || |||||
Sbjct: 29 ttcttccttgccgagacacttaagta 4
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1251 tctgacaagatggatgaacttgcttgctttgctcctggtatgctggccttagg 1303
|||||||||||||||||| | || |||| ||||||||| ||| |||| |||||
Sbjct: 425 tctgacaagatggatgaattggcatgctctgctcctggcatgttggctttagg 373
>gb|CA923569.1|CA923569 MTU7CL.P12.A11 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 613
Score = 85.7 bits (43), Expect = 7e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 849 cataatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaactt 908
||||| || ||||||||| ||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 602 cataacccaggatggactggtggtgacagtattcttgccgattctggcacagagcaactt 543
Query: 909 gaattcatagctctttcacagaggactggagatcccaaataccagcagaaggcggagaa 967
|||||||| |||||||| || ||||| ||||| || || || ||||||||||| |||||
Sbjct: 542 gaattcattgctctttctcataggacaggagacccgaagtatcagcagaaggcagagaa 484
Score = 77.8 bits (39), Expect = 2e-012
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 226 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 167
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
| || |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 166 caggaatgctggctttaggatcatctggttatgggcctgatgactctcagaaaatcttca 107
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 106 cacttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 47
Query: 1405 tggctggagaaaattattttttc 1427
||||||| || ||||||||||||
Sbjct: 46 tggctggggagaattattttttc 24
Score = 58.0 bits (29), Expect = 2e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 1046 atcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||| || || || ||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 405 atcatactcgaccataacttttggggcaatgggtgacagcttttatgaatatttgctcaa 346
Query: 1106 ggtctggatccaggggaataaaact 1130
|| ||||| || ||||| ||||||
Sbjct: 345 agtttggattcaagggaacaaaact 321
>gb|CA923949.1|CA923949 MTU7CL.P16.H12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 613
Score = 85.7 bits (43), Expect = 7e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 849 cataatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaactt 908
||||| || ||||||||| ||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 602 cataacccaggatggactggtggtgacagtattcttgccgattctggcacagagcaactt 543
Query: 909 gaattcatagctctttcacagaggactggagatcccaaataccagcagaaggcggagaa 967
|||||||| |||||||| || ||||| ||||| || || || ||||||||||| |||||
Sbjct: 542 gaattcattgctctttctcataggacaggagacccgaagtatcagcagaaggcagagaa 484
Score = 77.8 bits (39), Expect = 2e-012
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 226 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 167
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
| || |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 166 caggaatgctggctttaggatcatctggttatgggcctgatgactctcagaaaatcttca 107
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 106 cacttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 47
Query: 1405 tggctggagaaaattattttttc 1427
||||||| || ||||||||||||
Sbjct: 46 tggctggggagaattattttttc 24
Score = 58.0 bits (29), Expect = 2e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 1046 atcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||| || || || ||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 405 atcatactcgaccataacttttggggcaatgggtgacagcttttatgaatatttgctcaa 346
Query: 1106 ggtctggatccaggggaataaaact 1130
|| ||||| || ||||| ||||||
Sbjct: 345 agtttggattcaagggaacaaaact 321
>gb|CA926534.1|CA926534 MTU6CR.P16.B08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 615
Score = 85.7 bits (43), Expect = 7e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 849 cataatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaactt 908
||||| || ||||||||| ||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 604 cataacccaggatggactggtggtgacagtattcttgccgattctggcacagagcaactt 545
Query: 909 gaattcatagctctttcacagaggactggagatcccaaataccagcagaaggcggagaa 967
|||||||| |||||||| || ||||| ||||| || || || ||||||||||| |||||
Sbjct: 544 gaattcattgctctttctcataggacaggagacccgaagtatcagcagaaggcagagaa 486
Score = 75.8 bits (38), Expect = 7e-012
Identities = 161/202 (79%)
Strand = Plus / Minus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 228 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 169
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
| || |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 168 caggaatgctggctttaggatcatctggttatgggcccgatgactctcagaaaatcttca 109
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 108 cacttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 49
Query: 1405 tggctggagaaaattatttttt 1426
||||||| || |||||||||||
Sbjct: 48 tggctggggagaattatttttt 27
Score = 60.0 bits (30), Expect = 4e-007
Identities = 116/142 (81%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 1046 atcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||| || || || ||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 407 atcatactcgaccataacttttggggcaatgggtgacagcttttatgaatatttgctcaa 348
Query: 1106 ggtctggatccaggggaataaaac-tgagcatgtaaaacactacagacaaatgtgggaga 1164
|| ||||| || ||||| ||||| | ||| ||| | | | || ||| ||||||||||||
Sbjct: 347 agtttggattcaagggaacaaaacttcagc-tgtgagaaattatagagaaatgtgggaga 289
Query: 1165 catcaatggaaggtctattaag 1186
||||||| ||||||| |||||
Sbjct: 288 aatcaatgaaaggtctcttaag 267
>gb|BU882270.1|BU882270 UM74TG12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 567
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 849 cataatcctggatggactaacggtgatagtatccttgcagattctggtacggagcaactt 908
||||| || ||||||||| ||||| ||||| ||||| |||||||| || ||||| |||
Sbjct: 188 cataacccaggatggactggtggtgacagtattcttgccgattctggcacagagcagctt 247
Query: 909 gaattcatagctctttcacagaggactggagatcccaaataccagcagaaggcggagaa 967
|||||||| |||||||| || ||||| ||||| || || || ||||||||||| |||||
Sbjct: 248 gaattcattgctctttctcataggacaggagacccaaagtatcagcagaaggcagagaa 306
Score = 50.1 bits (25), Expect = 4e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 1046 atcatactcaactatcacatttggtgctatgggagacagcttctacgaatatttgctcaa 1105
||||||||| || || || ||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 385 atcatactcgaccataacttttggggcaatgggtgacagcttttatgaatatttgctcaa 444
Query: 1106 ggtctggatccaggggaataaaact 1130
|| |||| || ||||| ||||||
Sbjct: 445 agttcggattcaagggaacaaaact 469
>gb|CA924119.1|CA924119 MTU7CL.P1.H09 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 409
Score = 75.8 bits (38), Expect = 7e-012
Identities = 161/202 (79%)
Strand = Plus / Minus
Query: 1225 tttgtgaaaagaatggtggctcgttgtctgacaagatggatgaacttgcttgctttgctc 1284
||||||| |||||||| | |||| |||| ||||||||||||||| | || ||||||||||
Sbjct: 227 tttgtgagaagaatggagactcgctgtcagacaagatggatgaattagcatgctttgctc 168
Query: 1285 ctggtatgctggccttaggtgcctctggttacgggccagaaaaatcagagcaaattatga 1344
| || |||||||| ||||| | |||||||| ||||| || | || || |||| | |
Sbjct: 167 caggaatgctggctttaggatcatctggttatgggcctgatgactctcagaaaatcttca 108
Query: 1345 atcttgcaaaagagcttgctaggacctgctataatttctaccaaaccactcccacgaagt 1404
||||| ||||||||||| |||| ||||| || ||||||||| | || || || || |
Sbjct: 107 cacttgctgaagagcttgcttggacttgctacaacttctaccaatcaacacctacaaaat 48
Query: 1405 tggctggagaaaattatttttt 1426
||||||| || |||||||||||
Sbjct: 47 tggctggggagaattatttttt 26
Score = 44.1 bits (22), Expect = 0.023
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1153 aaatgtgggagacatcaatggaaggtctattaag 1186
|||||||||||| ||||||| ||||||| |||||
Sbjct: 299 aaatgtgggagaaatcaatgaaaggtctcttaag 266
>gb|BI130093.1|BI130093 G100P01Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 220
Score = 73.8 bits (37), Expect = 3e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1416 aattattttttccatactggacaggacatgggtgtgggcacgtcgtggaacatcttgaga 1475
||||||||||| | | |||| |||||||| |||| || || || |||||||| ||||||
Sbjct: 8 aattatttttttcgtcctggggaggacatgagtgttggtacatcttggaacatattgaga 67
Query: 1476 ccggagactgttgaatcactgatgtacctgtggcgcttgacggggaataaaacataccaa 1535
|| || ||||||||||| || | ||||||||||| |||||||| || | || || | |
Sbjct: 68 ccagaaactgttgaatccctcttttacctgtggcgtttgacgggcaacaggacttatcga 127
Query: 1536 gattgggggtgggacatattccaggcatttgagaagaactc 1576
|| ||||| ||| | |||||||| |||||||| ||||||||
Sbjct: 128 gagtggggttggaatatattccaagcatttgaaaagaactc 168
>gb|CK318025.1|CK318025 B9P04f02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.36
Identities = 86/108 (79%)
Strand = Plus / Plus
Query: 1637 gatgcagagtttcttcctggcagagacgctgaagtacctgtacctacttttctcccctcc 1696
|||||| |||||||| ||||| ||||| || ||||| || || || |||| ||| || |
Sbjct: 4 gatgcaaagtttctttctggccgagactcttaagtatctttatcttctttcctctccatc 63
Query: 1697 atcagtcatatccttcgacgagtgggttttcaatactgaagctcaccc 1744
|||||||| || | || |||||||||||||| || ||||| |||||
Sbjct: 64 ttcagtcatctcactagatgagtgggttttcaacacagaagcccaccc 111
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 261,332
Number of Sequences: 369679
Number of extensions: 261332
Number of successful extensions: 70094
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70030
Number of HSP's gapped (non-prelim): 57
length of query: 2249
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2229
effective length of database: 196,015,084
effective search space: 436917622236
effective search space used: 436917622236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)