BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF41c07.yg.2.1
         (691 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC149540.1|  Populus trichocarpa clone Pop1-111J19, compl...    78   5e-013
gb|DT493588.1|DT493588  WS0111.BR_N04 PT-P-FL-A-2 Populus tr...    60   1e-007
gb|DT495294.1|DT495294  WS01120.BR_A19 PT-P-FL-A-2 Populus t...    60   1e-007
gb|DT497112.1|DT497112  WS01125.BR_I08 PT-P-FL-A-2 Populus t...    60   1e-007
gb|CA821982.1|CA821982  R02C12 two-month-old roots from clon...    58   5e-007
gb|BP925807.1|BP925807  BP925807 full-length enriched poplar...    46   0.002
gb|BP924307.1|BP924307  BP924307 full-length enriched poplar...    44   0.007
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 77.8 bits (39), Expect = 5e-013
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                         
Query: 469   cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
             ||||||||||||| || ||||||| ||||| ||| ||||| || || || ||||||||||
Sbjct: 22594 cctgattcatatcaattgtctgaattgcatttccacgagtaaatataattgcatggtttt 22535

                                                                         
Query: 529   ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
             | ||||||||| | ||||| || || || || ||||||||||| ||||   |||||||||
Sbjct: 22534 gattctcaggttttccttctccaagttttggattcccaggcaacttaacagagtatattt 22475

              
Query: 589   c 589
             |
Sbjct: 22474 c 22474

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                         
Query: 155   atatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttat 214
             |||||||||||| || || || || || ||||| ||||||||||| ||||| || |||||
Sbjct: 25379 atatatatcttcactgatgttgataacacgagaggccttgctaataccaccccgagttat 25320

                                                       
Query: 215   gtgaaatatccgatcaaaaacatcaggatgtccatagtgcat 256
             ||| || |  |  ||||||||||| ||||||||||| |||||
Sbjct: 25319 gtggaaaactctgtcaaaaacatctggatgtccataatgcat 25278

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 15    agaacttgctcaccattgcctccagcaactttcccctcaaata 57
             ||||||||||||||||| || |||| ||| ||||| |||||||
Sbjct: 26099 agaacttgctcaccattaccaccagaaaccttcccttcaaata 26057

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                         
Query: 276   agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
             |||||||| || || | ||| ||||| ||||| ||||| || ||||||||||| || |  
Sbjct: 25168 agaacacgctggccgagagttacaaagctagtttcctgatttgacataaatgaggctaaa 25109

                        
Query: 336   gaagagacact 346
             |||||||||||
Sbjct: 25108 gaagagacact 25098
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
           5', mRNA sequence
          Length = 599

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 107/133 (80%)
 Strand = Plus / Minus

                                                                       
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
           |||||||||  || ||||| ||||||||||  ||||| |||| |||||||||||| ||||
Sbjct: 284 gaaattcttgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttca 225

                                                                       
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
           |||| || |  || |   | ||||| || |||||||| || |||||||||||||| || |
Sbjct: 224 tatctattgcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctg 165

                        
Query: 538 gtntgccttcacc 550
           || | ||||||||
Sbjct: 164 gttttccttcacc 152
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01120_A19 5', mRNA sequence
          Length = 872

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 107/133 (80%)
 Strand = Plus / Minus

                                                                       
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
           |||||||||  || ||||| ||||||||||  ||||| |||| |||||||||||| ||||
Sbjct: 284 gaaattcttgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttca 225

                                                                       
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
           |||| || |  || |   | ||||| || |||||||| || |||||||||||||| || |
Sbjct: 224 tatctattgcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctg 165

                        
Query: 538 gtntgccttcacc 550
           || | ||||||||
Sbjct: 164 gttttccttcacc 152
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01125_I08 5', mRNA sequence
          Length = 908

 Score = 60.0 bits (30), Expect = 1e-007
 Identities = 107/133 (80%)
 Strand = Plus / Minus

                                                                       
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
           |||||||||  || ||||| ||||||||||  ||||| |||| |||||||||||| ||||
Sbjct: 287 gaaattcttgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttca 228

                                                                       
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
           |||| || |  || |   | ||||| || |||||||| || |||||||||||||| || |
Sbjct: 227 tatctattgcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctg 168

                        
Query: 538 gtntgccttcacc 550
           || | ||||||||
Sbjct: 167 gttttccttcacc 155
>gb|CA821982.1|CA821982 R02C12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
           x Populus deltoides cDNA 5', mRNA sequence
          Length = 291

 Score = 58.0 bits (29), Expect = 5e-007
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
           ||||||| | ||| ||||||||||| ||||| ||||| || |||||||| ||||| || |
Sbjct: 233 acacatccctgcttagaacttgctcgccatttcctcctgccactttcccttcaaaaaggg 174

                                                                
Query: 61  caatttggttcaagccaacatcacgccctttccccacctggatatattcatgg 113
           |||| ||||| || ||||| || |  || || || ||||| ||||||||||||
Sbjct: 173 caatctggtttaacccaacgtctcttccctttccaacctgaatatattcatgg 121
>gb|BP925807.1|BP925807 BP925807 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-050_P13.f 5', mRNA sequence
          Length = 365

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
           ||||||| | ||| ||||||||||| ||||| ||||| || ||| |||| ||||| || |
Sbjct: 103 acacatccctgcttagaacttgctcgccatttcctcctgccactctcccttcaaaaaggg 44

                              
Query: 61  caatttggttcaagccaac 79
           |||| ||||| || |||||
Sbjct: 43  caatctggtttaacccaac 25
>gb|BP924307.1|BP924307 BP924307 full-length enriched poplar cDNA library Populus nigra
          cDNA clone PnFL1-030_I23.f 5', mRNA sequence
          Length = 342

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                      
Query: 1  acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
          ||||||| | ||| ||||||||||| ||||| ||||  || |||||||| ||||| || |
Sbjct: 76 acacatcgctgcttagaacttgctcgccatttcctcatgccactttcccttcaaaaaggg 17

                    
Query: 61 caatttggtt 70
          |||| |||||
Sbjct: 16 caatctggtt 7
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,553
Number of Sequences: 369679
Number of extensions: 70553
Number of successful extensions: 18995
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18970
Number of HSP's gapped (non-prelim): 23
length of query: 691
length of database: 203,408,664
effective HSP length: 19
effective length of query: 672
effective length of database: 196,384,763
effective search space: 131970560736
effective search space used: 131970560736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)