BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 78 5e-013
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 60 1e-007
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 60 1e-007
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 60 1e-007
gb|CA821982.1|CA821982 R02C12 two-month-old roots from clon... 58 5e-007
gb|BP925807.1|BP925807 BP925807 full-length enriched poplar... 46 0.002
gb|BP924307.1|BP924307 BP924307 full-length enriched poplar... 44 0.007
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 77.8 bits (39), Expect = 5e-013
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || ||||||| ||||| ||| ||||| || || || ||||||||||
Sbjct: 22594 cctgattcatatcaattgtctgaattgcatttccacgagtaaatataattgcatggtttt 22535
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| ||||||||| | ||||| || || || || ||||||||||| |||| |||||||||
Sbjct: 22534 gattctcaggttttccttctccaagttttggattcccaggcaacttaacagagtatattt 22475
Query: 589 c 589
|
Sbjct: 22474 c 22474
Score = 60.0 bits (30), Expect = 1e-007
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 155 atatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttat 214
|||||||||||| || || || || || ||||| ||||||||||| ||||| || |||||
Sbjct: 25379 atatatatcttcactgatgttgataacacgagaggccttgctaataccaccccgagttat 25320
Query: 215 gtgaaatatccgatcaaaaacatcaggatgtccatagtgcat 256
||| || | | ||||||||||| ||||||||||| |||||
Sbjct: 25319 gtggaaaactctgtcaaaaacatctggatgtccataatgcat 25278
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 15 agaacttgctcaccattgcctccagcaactttcccctcaaata 57
||||||||||||||||| || |||| ||| ||||| |||||||
Sbjct: 26099 agaacttgctcaccattaccaccagaaaccttcccttcaaata 26057
Score = 38.2 bits (19), Expect = 0.43
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || || | ||| ||||| ||||| ||||| || ||||||||||| || |
Sbjct: 25168 agaacacgctggccgagagttacaaagctagtttcctgatttgacataaatgaggctaaa 25109
Query: 336 gaagagacact 346
|||||||||||
Sbjct: 25108 gaagagacact 25098
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 60.0 bits (30), Expect = 1e-007
Identities = 107/133 (80%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| || ||||| |||||||||| ||||| |||| |||||||||||| ||||
Sbjct: 284 gaaattcttgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttca 225
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
|||| || | || | | ||||| || |||||||| || |||||||||||||| || |
Sbjct: 224 tatctattgcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctg 165
Query: 538 gtntgccttcacc 550
|| | ||||||||
Sbjct: 164 gttttccttcacc 152
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 60.0 bits (30), Expect = 1e-007
Identities = 107/133 (80%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| || ||||| |||||||||| ||||| |||| |||||||||||| ||||
Sbjct: 284 gaaattcttgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttca 225
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
|||| || | || | | ||||| || |||||||| || |||||||||||||| || |
Sbjct: 224 tatctattgcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctg 165
Query: 538 gtntgccttcacc 550
|| | ||||||||
Sbjct: 164 gttttccttcacc 152
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 60.0 bits (30), Expect = 1e-007
Identities = 107/133 (80%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| || ||||| |||||||||| ||||| |||| |||||||||||| ||||
Sbjct: 287 gaaattcttgcagcaaattcctcattttcaaggcttcttccatgtagttatcctggttca 228
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
|||| || | || | | ||||| || |||||||| || |||||||||||||| || |
Sbjct: 227 tatctattgcttgcaagccttctccacgtgtgaagataatagcatggttttggttttctg 168
Query: 538 gtntgccttcacc 550
|| | ||||||||
Sbjct: 167 gttttccttcacc 155
>gb|CA821982.1|CA821982 R02C12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 291
Score = 58.0 bits (29), Expect = 5e-007
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||| | ||| ||||||||||| ||||| ||||| || |||||||| ||||| || |
Sbjct: 233 acacatccctgcttagaacttgctcgccatttcctcctgccactttcccttcaaaaaggg 174
Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatgg 113
|||| ||||| || ||||| || | || || || ||||| ||||||||||||
Sbjct: 173 caatctggtttaacccaacgtctcttccctttccaacctgaatatattcatgg 121
>gb|BP925807.1|BP925807 BP925807 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.f 5', mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 0.002
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||| | ||| ||||||||||| ||||| ||||| || ||| |||| ||||| || |
Sbjct: 103 acacatccctgcttagaacttgctcgccatttcctcctgccactctcccttcaaaaaggg 44
Query: 61 caatttggttcaagccaac 79
|||| ||||| || |||||
Sbjct: 43 caatctggtttaacccaac 25
>gb|BP924307.1|BP924307 BP924307 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.f 5', mRNA sequence
Length = 342
Score = 44.1 bits (22), Expect = 0.007
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||| | ||| ||||||||||| ||||| |||| || |||||||| ||||| || |
Sbjct: 76 acacatcgctgcttagaacttgctcgccatttcctcatgccactttcccttcaaaaaggg 17
Query: 61 caatttggtt 70
|||| |||||
Sbjct: 16 caatctggtt 7
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,553
Number of Sequences: 369679
Number of extensions: 70553
Number of successful extensions: 18995
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18970
Number of HSP's gapped (non-prelim): 23
length of query: 691
length of database: 203,408,664
effective HSP length: 19
effective length of query: 672
effective length of database: 196,384,763
effective search space: 131970560736
effective search space used: 131970560736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)