BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF13b04.yg.2.1
(370 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 62 2e-008
gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Libr... 44 0.004
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 42 0.014
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.014
gb|AJ771544.1|AJ771544 AJ771544 Populus euphratica root 3-6... 42 0.014
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.057
gb|BU879788.1|BU879788 UM37TE01 Populus flower cDNA library... 38 0.23
gb|BU880675.1|BU880675 UM53TE02 Populus flower cDNA library... 38 0.23
gb|BU882103.1|BU882103 UM72TF03 Populus flower cDNA library... 38 0.23
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.23
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.23
gb|AJ768840.1|AJ768840 AJ768840 Populus euphratica leaf adu... 38 0.23
gb|AJ771819.1|AJ771819 AJ771819 Populus euphratica root 3-6... 38 0.23
gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in... 38 0.23
gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6... 38 0.23
gb|AJ770311.1|AJ770311 AJ770311 Populus euphratica leaf 3-6... 38 0.23
gb|CV240336.1|CV240336 WS0251.B21_B19 PT-MB-N-A-15 Populus ... 38 0.23
gb|CV244697.1|CV244697 WS0255.B21_F21 PT-MB-N-A-15 Populus ... 38 0.23
gb|CV280252.1|CV280252 WS0135.B21_I15 PTxD-IL-FL-A-4 Populu... 38 0.23
gb|DN490899.1|DN490899 UM37TE01.3pR Populus female catkins ... 38 0.23
gb|DN500904.1|DN500904 UM37TE01.5pR Populus female catkins ... 38 0.23
gb|DT477735.1|DT477735 WS02520.BR_N08 PT-MB-N-A-15 Populus ... 38 0.23
gb|DT477877.1|DT477877 WS02521.BR_D21 PT-MB-N-A-15 Populus ... 38 0.23
gb|DT482805.1|DT482805 WS02520.B21_N08 PT-MB-N-A-15 Populus... 38 0.23
gb|DT482952.1|DT482952 WS02521.B21_D21 PT-MB-N-A-15 Populus... 38 0.23
gb|DT488238.1|DT488238 WS02535.B21_O03 PT-MB-N-A-15 Populus... 38 0.23
gb|DT501229.1|DT501229 WS0131.BR_P20 PTxD-IL-FL-A-4 Populus... 38 0.23
gb|DT502156.1|DT502156 WS01315.BR_N07 PTxD-IL-FL-A-4 Populu... 38 0.23
gb|DT502416.1|DT502416 WS0132.BR_O10 PTxD-IL-FL-A-4 Populus... 38 0.23
gb|DT503120.1|DT503120 WS0135.BR_I15 PTxD-IL-FL-A-4 Populus... 38 0.23
gb|DT505047.1|DT505047 WS01315.B21_N07 PTxD-IL-FL-A-4 Popul... 38 0.23
gb|DV463816.1|DV463816 MTUNUL1.P2.G05 NUL Populus fremontii... 38 0.23
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.23
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 61.9 bits (31), Expect = 2e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 113 tgctgctctgaacactcaatttcttttccagattggtgtatttactgctgt 163
|||||||||||||||||||||||| || || |||||| | |||||||||||
Sbjct: 27231 tgctgctctgaacactcaatttctctttcaaattggtatttttactgctgt 27281
>gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 189
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgct 369
||||||||||||||||||||||
Sbjct: 168 gtacctcggccgcgaccacgct 189
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.014
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtaca 290
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.014
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtaca 624
Score = 40.1 bits (20), Expect = 0.057
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtac 656
>gb|AJ771544.1|AJ771544 AJ771544 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002E06F1, mRNA sequence
Length = 180
Score = 42.1 bits (21), Expect = 0.014
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtacatatt 25
|||||||||||||||||||||
Sbjct: 132 ccgcccgggcaggtacatatt 112
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.057
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|BU879788.1|BU879788 UM37TE01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 479
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 174 agaacacatccttgaatgctgctctga 200
>gb|BU880675.1|BU880675 UM53TE02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 254 agaacacatccttgaatgctgctctga 280
>gb|BU882103.1|BU882103 UM72TF03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 573
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 254 agaacacatccttgaatgctgctctga 280
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.23
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.23
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|AJ768840.1|AJ768840 AJ768840 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100022D05F1, mRNA sequence
Length = 678
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 231 agaacacatccttgaatgctgctctga 257
>gb|AJ771819.1|AJ771819 AJ771819 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600010E12F1, mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.23
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtacata 23
|||||||||||||||||||
Sbjct: 522 ccgcccgggcaggtacata 504
>gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700002E01F1, mRNA sequence
Length = 386
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||| ||||||||||
Sbjct: 364 gtacctcggccgggaccacgcta 386
>gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006A08F1, mRNA sequence
Length = 179
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||| ||||||||||
Sbjct: 157 gtacctcggccgggaccacgcta 179
>gb|AJ770311.1|AJ770311 AJ770311 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100010C11F1, mRNA sequence
Length = 443
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 7 gcccgggcaggtacatatttctc 29
|||||||||||||||| ||||||
Sbjct: 443 gcccgggcaggtacatctttctc 421
>gb|CV240336.1|CV240336 WS0251.B21_B19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_B19 3', mRNA sequence
Length = 829
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 618 agaacacatccttgaatgctgctctga 592
>gb|CV244697.1|CV244697 WS0255.B21_F21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0255_F21 3', mRNA sequence
Length = 889
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 746 agaacacatccttgaatgctgctctga 720
>gb|CV280252.1|CV280252 WS0135.B21_I15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I15 3', mRNA sequence
Length = 838
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 681 agaacacatccttgaatgctgctctga 655
>gb|DN490899.1|DN490899 UM37TE01.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM37TE01 3', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 539 agaacacatccttgaatgctgctctga 513
>gb|DN500904.1|DN500904 UM37TE01.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM37TE01 5', mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 258 agaacacatccttgaatgctgctctga 284
>gb|DT477735.1|DT477735 WS02520.BR_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_N08 5', mRNA sequence
Length = 833
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 246 agaacacatccttgaatgctgctctga 272
>gb|DT477877.1|DT477877 WS02521.BR_D21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_D21 5', mRNA sequence
Length = 810
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 460 agaacacatccttgaatgctgctctga 486
>gb|DT482805.1|DT482805 WS02520.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_N08 3', mRNA sequence
Length = 848
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 621 agaacacatccttgaatgctgctctga 595
>gb|DT482952.1|DT482952 WS02521.B21_D21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_D21 3', mRNA sequence
Length = 884
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 747 agaacacatccttgaatgctgctctga 721
>gb|DT488238.1|DT488238 WS02535.B21_O03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_O03 3', mRNA sequence
Length = 878
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 688 agaacacatccttgaatgctgctctga 662
>gb|DT501229.1|DT501229 WS0131.BR_P20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_P20 5', mRNA sequence
Length = 793
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 186 agaacacatccttgaatgctgctctga 212
>gb|DT502156.1|DT502156 WS01315.BR_N07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01315_N07 5', mRNA sequence
Length = 861
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 182 agaacacatccttgaatgctgctctga 208
>gb|DT502416.1|DT502416 WS0132.BR_O10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0132_O10 5', mRNA sequence
Length = 783
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 187 agaacacatccttgaatgctgctctga 213
>gb|DT503120.1|DT503120 WS0135.BR_I15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_I15 5', mRNA sequence
Length = 862
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 182 agaacacatccttgaatgctgctctga 208
>gb|DT505047.1|DT505047 WS01315.B21_N07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01315_N07 3', mRNA sequence
Length = 854
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 681 agaacacatccttgaatgctgctctga 655
>gb|DV463816.1|DV463816 MTUNUL1.P2.G05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 805
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 97 agaacgcagccttgaatgctgctctga 123
||||| || ||||||||||||||||||
Sbjct: 455 agaacacatccttgaatgctgctctga 481
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.23
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,044
Number of Sequences: 369679
Number of extensions: 48044
Number of successful extensions: 12904
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12857
Number of HSP's gapped (non-prelim): 47
length of query: 370
length of database: 203,408,664
effective HSP length: 18
effective length of query: 352
effective length of database: 196,754,442
effective search space: 69257563584
effective search space used: 69257563584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)