BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF13b04.yg.2.1
         (370 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC149540.1|  Populus trichocarpa clone Pop1-111J19, compl...    62   2e-008
gb|CF119260.1|CF119260  MTU10CS.P15.E09 Aspen stem cDNA Libr...    44   0.004
gb|CA933471.1|CA933471  MTU5CS.P8.E06 Aspen stem cDNA Librar...    42   0.014
gb|CF118925.1|CF118925  MTU10CS.P11.C02 Aspen stem cDNA Libr...    42   0.014
gb|AJ771544.1|AJ771544  AJ771544 Populus euphratica root 3-6...    42   0.014
gb|AJ534481.1|AJ534481  AJ534481 Populus euphratica root and...    40   0.057
gb|BU879788.1|BU879788  UM37TE01 Populus flower cDNA library...    38   0.23 
gb|BU880675.1|BU880675  UM53TE02 Populus flower cDNA library...    38   0.23 
gb|BU882103.1|BU882103  UM72TF03 Populus flower cDNA library...    38   0.23 
gb|CA924833.1|CA924833  MTU7TL.P10.B12 Aspen leaf cDNA Libra...    38   0.23 
gb|CA925020.1|CA925020  MTU7TL.P12.F05 Aspen leaf cDNA Libra...    38   0.23 
gb|AJ768840.1|AJ768840  AJ768840 Populus euphratica leaf adu...    38   0.23 
gb|AJ771819.1|AJ771819  AJ771819 Populus euphratica root 3-6...    38   0.23 
gb|AJ772174.1|AJ772174  AJ772174 Populus euphratica shoot in...    38   0.23 
gb|AJ770035.1|AJ770035  AJ770035 Populus euphratica leaf 3-6...    38   0.23 
gb|AJ770311.1|AJ770311  AJ770311 Populus euphratica leaf 3-6...    38   0.23 
gb|CV240336.1|CV240336  WS0251.B21_B19 PT-MB-N-A-15 Populus ...    38   0.23 
gb|CV244697.1|CV244697  WS0255.B21_F21 PT-MB-N-A-15 Populus ...    38   0.23 
gb|CV280252.1|CV280252  WS0135.B21_I15 PTxD-IL-FL-A-4 Populu...    38   0.23 
gb|DN490899.1|DN490899  UM37TE01.3pR Populus female catkins ...    38   0.23 
gb|DN500904.1|DN500904  UM37TE01.5pR Populus female catkins ...    38   0.23 
gb|DT477735.1|DT477735  WS02520.BR_N08 PT-MB-N-A-15 Populus ...    38   0.23 
gb|DT477877.1|DT477877  WS02521.BR_D21 PT-MB-N-A-15 Populus ...    38   0.23 
gb|DT482805.1|DT482805  WS02520.B21_N08 PT-MB-N-A-15 Populus...    38   0.23 
gb|DT482952.1|DT482952  WS02521.B21_D21 PT-MB-N-A-15 Populus...    38   0.23 
gb|DT488238.1|DT488238  WS02535.B21_O03 PT-MB-N-A-15 Populus...    38   0.23 
gb|DT501229.1|DT501229  WS0131.BR_P20 PTxD-IL-FL-A-4 Populus...    38   0.23 
gb|DT502156.1|DT502156  WS01315.BR_N07 PTxD-IL-FL-A-4 Populu...    38   0.23 
gb|DT502416.1|DT502416  WS0132.BR_O10 PTxD-IL-FL-A-4 Populus...    38   0.23 
gb|DT503120.1|DT503120  WS0135.BR_I15 PTxD-IL-FL-A-4 Populus...    38   0.23 
gb|DT505047.1|DT505047  WS01315.B21_N07 PTxD-IL-FL-A-4 Popul...    38   0.23 
gb|DV463816.1|DV463816  MTUNUL1.P2.G05 NUL Populus fremontii...    38   0.23 
gb|AF139835.1|AF139835  Populus tremula x Populus tremuloide...    38   0.23 
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 61.9 bits (31), Expect = 2e-008
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 113   tgctgctctgaacactcaatttcttttccagattggtgtatttactgctgt 163
             |||||||||||||||||||||||| || || |||||| | |||||||||||
Sbjct: 27231 tgctgctctgaacactcaatttctctttcaaattggtatttttactgctgt 27281
>gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 189

 Score = 44.1 bits (22), Expect = 0.004
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 348 gtacctcggccgcgaccacgct 369
           ||||||||||||||||||||||
Sbjct: 168 gtacctcggccgcgaccacgct 189
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 606

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   gcggccgcccgggcaggtaca 21
           |||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtaca 290
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 786

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtaca 21
           |||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtaca 624

 Score = 40.1 bits (20), Expect = 0.057
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtac 656
>gb|AJ771544.1|AJ771544 AJ771544 Populus euphratica root 3-6 months Populus euphratica cDNA
           clone P0001600002E06F1, mRNA sequence
          Length = 180

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ccgcccgggcaggtacatatt 25
           |||||||||||||||||||||
Sbjct: 132 ccgcccgggcaggtacatatt 112
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
           clone 46, mRNA sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 0.057
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|BU879788.1|BU879788 UM37TE01 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 479

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 174 agaacacatccttgaatgctgctctga 200
>gb|BU880675.1|BU880675 UM53TE02 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 609

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 254 agaacacatccttgaatgctgctctga 280
>gb|BU882103.1|BU882103 UM72TF03 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 573

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 254 agaacacatccttgaatgctgctctga 280
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 569

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   gcggccgcccgggcaggta 19
           |||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 568

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   gcggccgcccgggcaggta 19
           |||||||||||||||||||
Sbjct: 547 gcggccgcccgggcaggta 529
>gb|AJ768840.1|AJ768840 AJ768840 Populus euphratica leaf adult Populus euphratica cDNA
           clone P0000100022D05F1, mRNA sequence
          Length = 678

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 231 agaacacatccttgaatgctgctctga 257
>gb|AJ771819.1|AJ771819 AJ771819 Populus euphratica root 3-6 months Populus euphratica cDNA
           clone P0001600010E12F1, mRNA sequence
          Length = 523

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 5   ccgcccgggcaggtacata 23
           |||||||||||||||||||
Sbjct: 522 ccgcccgggcaggtacata 504
>gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in vitro plantlet Israel Populus
           euphratica cDNA clone P0001700002E01F1, mRNA sequence
          Length = 386

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 348 gtacctcggccgcgaccacgcta 370
           |||||||||||| ||||||||||
Sbjct: 364 gtacctcggccgggaccacgcta 386
>gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6 months, adult Populus
           euphratica cDNA clone P0001100006A08F1, mRNA sequence
          Length = 179

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 348 gtacctcggccgcgaccacgcta 370
           |||||||||||| ||||||||||
Sbjct: 157 gtacctcggccgggaccacgcta 179
>gb|AJ770311.1|AJ770311 AJ770311 Populus euphratica leaf 3-6 months, adult Populus
           euphratica cDNA clone P0001100010C11F1, mRNA sequence
          Length = 443

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 7   gcccgggcaggtacatatttctc 29
           |||||||||||||||| ||||||
Sbjct: 443 gcccgggcaggtacatctttctc 421
>gb|CV240336.1|CV240336 WS0251.B21_B19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0251_B19 3', mRNA sequence
          Length = 829

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 618 agaacacatccttgaatgctgctctga 592
>gb|CV244697.1|CV244697 WS0255.B21_F21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0255_F21 3', mRNA sequence
          Length = 889

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 746 agaacacatccttgaatgctgctctga 720
>gb|CV280252.1|CV280252 WS0135.B21_I15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0135_I15 3', mRNA sequence
          Length = 838

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 681 agaacacatccttgaatgctgctctga 655
>gb|DN490899.1|DN490899 UM37TE01.3pR Populus female catkins cDNA library Populus
           trichocarpa cDNA clone UM37TE01 3', mRNA sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 539 agaacacatccttgaatgctgctctga 513
>gb|DN500904.1|DN500904 UM37TE01.5pR Populus female catkins cDNA library Populus
           trichocarpa cDNA clone UM37TE01 5', mRNA sequence
          Length = 668

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 258 agaacacatccttgaatgctgctctga 284
>gb|DT477735.1|DT477735 WS02520.BR_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02520_N08 5', mRNA sequence
          Length = 833

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 246 agaacacatccttgaatgctgctctga 272
>gb|DT477877.1|DT477877 WS02521.BR_D21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02521_D21 5', mRNA sequence
          Length = 810

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 460 agaacacatccttgaatgctgctctga 486
>gb|DT482805.1|DT482805 WS02520.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02520_N08 3', mRNA sequence
          Length = 848

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 621 agaacacatccttgaatgctgctctga 595
>gb|DT482952.1|DT482952 WS02521.B21_D21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02521_D21 3', mRNA sequence
          Length = 884

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 747 agaacacatccttgaatgctgctctga 721
>gb|DT488238.1|DT488238 WS02535.B21_O03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02535_O03 3', mRNA sequence
          Length = 878

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 688 agaacacatccttgaatgctgctctga 662
>gb|DT501229.1|DT501229 WS0131.BR_P20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0131_P20 5', mRNA sequence
          Length = 793

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 186 agaacacatccttgaatgctgctctga 212
>gb|DT502156.1|DT502156 WS01315.BR_N07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS01315_N07 5', mRNA sequence
          Length = 861

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 182 agaacacatccttgaatgctgctctga 208
>gb|DT502416.1|DT502416 WS0132.BR_O10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0132_O10 5', mRNA sequence
          Length = 783

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 187 agaacacatccttgaatgctgctctga 213
>gb|DT503120.1|DT503120 WS0135.BR_I15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0135_I15 5', mRNA sequence
          Length = 862

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 182 agaacacatccttgaatgctgctctga 208
>gb|DT505047.1|DT505047 WS01315.B21_N07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS01315_N07 3', mRNA sequence
          Length = 854

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 681 agaacacatccttgaatgctgctctga 655
>gb|DV463816.1|DV463816 MTUNUL1.P2.G05 NUL Populus fremontii x Populus angustifolia cDNA,
           mRNA sequence
          Length = 805

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  agaacgcagccttgaatgctgctctga 123
           ||||| || ||||||||||||||||||
Sbjct: 455 agaacacatccttgaatgctgctctga 481
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
          TIR1 (TIR1) mRNA, complete cds
          Length = 2646

 Score = 38.2 bits (19), Expect = 0.23
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  gcggccgcccgggcaggta 19
          |||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,044
Number of Sequences: 369679
Number of extensions: 48044
Number of successful extensions: 12904
Number of sequences better than  0.5: 33
Number of HSP's better than  0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12857
Number of HSP's gapped (non-prelim): 47
length of query: 370
length of database: 203,408,664
effective HSP length: 18
effective length of query: 352
effective length of database: 196,754,442
effective search space: 69257563584
effective search space used: 69257563584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)