BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ770061.1|AJ770061 AJ770061 Populus euphratica leaf 3-6... 54 7e-006
gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZA... 48 5e-004
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 48 5e-004
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 46 0.002
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 42 0.028
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 42 0.028
gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid librar... 40 0.11
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 40 0.11
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 40 0.11
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 40 0.11
gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichoca... 40 0.11
gb|AJ769836.1|AJ769836 AJ769836 Populus euphratica leaf 3-6... 40 0.11
gb|AI165231.1|AI165231 A079P12U Hybrid aspen plasmid librar... 38 0.44
gb|AJ775686.1|AJ775686 AJ775686 Populus euphratica shoot 3-... 38 0.44
gb|AJ775697.1|AJ775697 AJ775697 Populus euphratica shoot 3-... 38 0.44
gb|AJ770150.1|AJ770150 AJ770150 Populus euphratica leaf 3-6... 38 0.44
gb|AJ770679.1|AJ770679 AJ770679 Populus euphratica leaf 3-6... 38 0.44
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.44
>gb|AJ770061.1|AJ770061 AJ770061 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006E01F1, mRNA sequence
Length = 295
Score = 54.0 bits (27), Expect = 7e-006
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 448 gatactttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcg 507
||||| |||||||||||||||| || || |||||||| ||||||| |||| || | |
Sbjct: 115 gataccttgcaccgccatgaagaatggtcctaccaaaataatgtgattttgtgcctaatg 174
Query: 508 aaaaggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcc 566
|||| ||||| || || || |||| ||| ||||||||||| || ||||| | |||||||
Sbjct: 175 aaaatgtgaagaagacagagcagagctgaagctgcattgtgatgaaactgacaacagcc 233
>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 645
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 366 ttgacaaagtgacttcgagaatagagcctataattttcagcaaa 409
|||||||||||||| || ||||| |||||||| || ||||||||
Sbjct: 362 ttgacaaagtgactgcgggaataaagcctatagttgtcagcaaa 319
Score = 44.1 bits (22), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 195 tcaacagtcttttgccactcgaaaccagaagggttgaa 232
|||||| |||| |||||||| ||||||||||| |||||
Sbjct: 533 tcaacaatcttctgccactcaaaaccagaaggattgaa 496
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 369 acaaagtgacttcgagaatagagcctataattttcagcaaactt 412
||||| ||||| || ||||||||||| ||||| |||||||||||
Sbjct: 87 acaaaatgactgcgggaatagagcctgtaattctcagcaaactt 44
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 454 ttgcaccgccatgaaggattgttctaccaaagtaatgtg 492
|||||||||||||||| || || |||||||| |||||||
Sbjct: 28019 ttgcaccgccatgaagaatggtcctaccaaaataatgtg 27981
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtaca 290
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 644 gcggccgcccgggcaggtaca 624
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 637 gcggccgcccgggcaggtac 656
>gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 268
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 189 aagtcctcaacagtcttttgccactcgaaaccagaagggttgaa 232
|||||||| || |||||||||||||| || ||||| || |||||
Sbjct: 204 aagtcctccactgtcttttgccactcaaatccagatggattgaa 161
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 498 gcggccgcccgggcaggtac 479
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacacaa 24
||||||||||||||||||| ||||
Sbjct: 547 gcggccgcccgggcaggtagacaa 524
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacacaa 24
||||||||||||||||||| ||||
Sbjct: 547 gcggccgcccgggcaggtagacaa 524
>gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_E01 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 95 atgcgcctgctcctcatcccaccaagattcccaact 130
|||| ||||||||| |||||||| |||||||||||
Sbjct: 126 atgctcctgctccttttcccaccaggattcccaact 91
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 16 ggtacacaatgccatactgaaacatga 42
||||||||| |||||||||||| ||||
Sbjct: 211 ggtacacaaggccatactgaaagatga 185
>gb|AJ769836.1|AJ769836 AJ769836 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100003C09F1, mRNA sequence
Length = 212
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 gcccgggcaggtacacaatg 26
||||||||||||||||||||
Sbjct: 204 gcccgggcaggtacacaatg 185
>gb|AI165231.1|AI165231 A079P12U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 359
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 16 ggtacacaatgccatactgaaacatga 42
||||||||| |||||||||||| ||||
Sbjct: 194 ggtacacaaggccatactgaaagatga 168
>gb|AJ775686.1|AJ775686 AJ775686 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300035D10F1, mRNA sequence
Length = 580
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 144 acaccaactccacctttataaag 166
|||||||||||| ||||||||||
Sbjct: 31 acaccaactccatctttataaag 53
>gb|AJ775697.1|AJ775697 AJ775697 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300035E10F1, mRNA sequence
Length = 560
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 144 acaccaactccacctttataaag 166
|||||||||||| ||||||||||
Sbjct: 31 acaccaactccatctttataaag 53
>gb|AJ770150.1|AJ770150 AJ770150 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100008A03F1, mRNA sequence
Length = 224
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6 cgcccgggcaggtacacaa 24
|||||||||||||||||||
Sbjct: 224 cgcccgggcaggtacacaa 206
>gb|AJ770679.1|AJ770679 AJ770679 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100015F05F1, mRNA sequence
Length = 303
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6 cgcccgggcaggtacacaa 24
|||||||||||||||||||
Sbjct: 303 cgcccgggcaggtacacaa 285
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 47 gcggccgcccgggcaggta 65
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,718
Number of Sequences: 369679
Number of extensions: 76718
Number of successful extensions: 20175
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20127
Number of HSP's gapped (non-prelim): 47
length of query: 709
length of database: 203,408,664
effective HSP length: 19
effective length of query: 690
effective length of database: 196,384,763
effective search space: 135505486470
effective search space used: 135505486470
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)