BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAE37h07.yg.2.1
         (642 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AI166267.1|AI166267  xylem.est.116 Poplar xylem Lambda ZA...    44   0.006
gb|AI164628.1|AI164628  A066P21U Hybrid aspen plasmid librar...    40   0.10 
gb|CN518891.1|CN518891  GQ0102.B3_E01 GQ010 Populus trichoca...    40   0.10 
gb|CF232861.1|CF232861  PtaJXO0016F7F0711 Poplar cDNA librar...    38   0.40 

>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
           cDNA 5', mRNA sequence
          Length = 645

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 175 tcaacagtcttttgccactcgaaaccagaagggttgaa 212
           |||||| |||| |||||||| ||||||||||| |||||
Sbjct: 533 tcaacaatcttctgccactcaaaaccagaaggattgaa 496



>gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA 5', mRNA sequence
          Length = 268

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 169 aagtcctcaacagtcttttgccactcgaaaccagaagggttgaa 212
           |||||||| || |||||||||||||| || ||||| || |||||
Sbjct: 204 aagtcctccactgtcttttgccactcaaatccagatggattgaa 161



>gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichocarpa x Populus deltoides cDNA
           clone GQ0102_E01 5', mRNA sequence
          Length = 508

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 75  atgcgcctgctcctcatcccaccaagattcccaact 110
           |||| |||||||||  |||||||| |||||||||||
Sbjct: 126 atgctcctgctccttttcccaccaggattcccaact 91



>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
           Populus alba x Populus tremula cDNA 5', mRNA sequence
          Length = 737

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 364 gaatagagcctataattttcagcaaac 390
           ||||||||||| ||||| |||||||||
Sbjct: 72  gaatagagcctgtaattctcagcaaac 46



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,427
Number of Sequences: 369679
Number of extensions: 41427
Number of successful extensions: 10163
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10154
Number of HSP's gapped (non-prelim): 9
length of query: 642
length of database: 203,408,664
effective HSP length: 19
effective length of query: 623
effective length of database: 196,384,763
effective search space: 122347707349
effective search space used: 122347707349
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)